Arrays for identifying agents which mimic or inhibit the activity of interferons

ABSTRACT

Methods and model systems for identifying and characterizing new therapeutic agents, particularly proteins, which mimic or inhibit the activity of all interferons, Type I interferons, IFN-α, IFN-β, or IFN-γ. The method comprises administering an interferon selected from the group consisting of IFN-α, IFN β, IFN-τ, IFN-ω, IFN-γ, and combinations thereof to cultured cells, administering the candidate agent to a duplicate culture of cells; and measuring the effect of the candidate agent and the interferon on the transcription or translation of one or, preferably, a plurality of the interferon stimulated genes or the interferon repressed genes (hereinafter referred to as “ISG&#39;s” and “IRGs”, respectively). The model system is an array with gene probes that hybridize with from about 100 to about 5000 ISG and IRG transcripts.

This application claims the benefit of U.S. Provisional No. 60/101,497, filed Sep. 23, 1998.

The present invention was made with support from National Institutes of Health Grant NOs. AI 34039, CA 44059, and CA 62220. The United States Government has certain rights in the invention.

BACKGROUND OF THE INVENTION

Interferons (IFNS) are a family of related cytokines that mediate a range of diverse functions including antiviral, antiproliferative, antitumor and immunomodulatory activities. The pleiotropic activities of IFNs are mediated primarily through the transcriptional regulation of many downstream effector genes. IFNs bind to their cognate receptors and initiate a signaling cascade, involving the JAK-family of tyrosine kinases and STAT-family of transcription factors, that leads to the transcriptional induction of a number of IFN-stimulated genes (ISGs). IFN actions are largely mediated by the proteins encoded by ISGs, the best studied of which include the dsRNA-activated protein kinase (PKR), the 2′-5′ oligoadenylate (2-5A) synthetases and 2-5A-dependent ribonuclease (RNaseL), and the Mx proteins. The other well-characterized category of ISGs include the STAT and IRF families of transcription factors which are involved in the regulation of both ISG and IFN gene expression. However, the biological functions for many ISGs, including 6-16, 9-27 and the ISG-54 gene family, remain unclear despite, in some cases, extensive investigation of the 5′ regulatory regions of those genes.

ISGs exhibit unique patterns of transcriptional inducibility by different types of IFNs. Type I IFNs, representing the IFN-alpha (α), -beta (β), -omega (ω), and -tau (τ) genes, are grouped together since they bind to common Type I IFN receptor, while IFN-gamma (γ) is designated as Type II IFN since it is the unique ligand for the distinct Type II IFN receptor. In general, engagement of the Type I IFN receptor results in activation of the multimeric transcription factor, ISGF3, and leads to the transcriptional initiation of gene promoters containing IFN-Stimulated Response Elements (ISRE). Type II IFN receptor stimulation typically activates STAT1 homodimers which can regulate transcription from gene promoters containing IFN-γ Activated Sites (GAS). In accordance with this model, the differential inducibility of certain ISGs by Type I, Type II IFN, or by both, can be attributed to the presence of canonical ISRE or GAS elements.

Despite their common utilization of the same receptor complex, distinct Type I IFN proteins can mediate different biological responses. Numerous studies, using recombinant or purified natural, IFN-α or IFN-β proteins, have shown that individual Type I IFNs can be distinguished by their unique profiles of specific biological activities including antiviral and antiproliferative finctions, natural killer cell stimulation, and receptor binding affinities. While the molecular mechanisms underlying these differences are not yet known, a likely possibility involves the differential expression of ISGs by the various Type I IFNs. The best documented example of this concept involves betaRI (βRI), a chemokine gene whose expression is preferentially inducible by IFN-β but not by IFN-γ nor several IFN-α subtypes.

Considerable efforts have been devoted to exploit the therapeutic potential of IFNs. Currently both IFN-α and IFN-β are used to treat patients with serious diseases. Presently, IFN-α is used in the treatment of chronic myelogenous leukemia (CML), hairy cell leukemia, renal cell carcinoma, melanoma, hepatitis C virus infections, Kaposi sarcoma and hepatitis B infections. IFN-β is used for the treatment of multiple sclerosis. Unfortunately, patients who have been treated with the currently available forms of IFN-α and IFN-β, which include purified naturally occurring IFNs and recombinant IFNs, have experienced serious side-effect including including fever, malaise, myalgia, and depression.

Accordingly, it is desirable to have new methods and tools for identifying new therapeutic agents (hereinafter referred to as “IFN mimics”) which upregulate the ISGs that cause desirable effects in patients but which do not upregulate the ISGs that cause the detrimental side-effects associated with treating patients with IFNs. It is also desirable to have methods and tools which can be used to identify agents that selectively inhibit upregulation of the ISGs that cause the detrimental side-effects which result from treatment with IFNs, particularly IFN-α and IFN-β. It is also desirable to have a method for establishing patient sensitivity to interferon before beginning treatment protocols. It is also desirable to have methods and tools for monitoring the efficacy of treatment of patients with the currently used interferons and with any new interferon-like agents which are being developed. It is also desirable to have new treatment protocols which can make interferon therapy for cancer more effective. It is also desirable to have new methods and tools for identifying the biochemical pathways by which IFNs mediate their therapeutic effects.

SUMMARY OF THE INVENTION

The present invention provides novel methods and model systems for identifying and characterizing new therapeutic agents, particularly proteins, which mimic the activity of all interferons, Type I interferons, IFN-α, IFN β, IFN-τ, IFN-ω, and IFN-γ,. The method comprises administering an interferon selected from the group consisting of IFN-α, IFN β, IFN-τ, IFN-ω, IFN-γ, and combinations thereof to cultured cells, administering the candidate agent to a duplicate culture of cells; and measuring the effect of the candidate agent and the interferon on the transcription or translation of one or, preferably, a plurality of the interferon stimulated genes or the interferon repressed genes (hereinafter referred to as “ISG's” and “IRGs”, respectively). The model system is an array with gene probes that hybridize with from about 100 to about 5000 ISG and IRG transcripts.

In another aspect the present invention provides new methods for identifying and characterizing new therapeutic agents which block the activity of all interferons, Type I interferons, select Type I interferons, or IFN-γ. The method comprises administering an interferon selected from the group consisting of IFN-α, IFN β, IFN-τ, IFN-ω, IFN-γ, and combinations thereof to cultured cells, administering the interferon and the candidate agent to a duplicate cell culture; and assaying for changes in the levels of transcription of one or, preferably, a plurality of ISGs and IRGs, particularly those new ISGs and IRGs which are listed in Table 2 and Table 3, respectively.

In another aspect the present invention provides new methods for identifying and characterizing new agents which inhibit the transcription or translation of a new ISG that has been uncovered by the present study. The method comprises administering the interferon which has been shown to stimulate transcription of the new ISG to a set of cultured cells, administering the interferon and the candidate inhibitor to a duplicate set of cultured cells; and measuring the levels of mRNA or the levels of protein or factor encoded by the ISG gene in the two sets of cultured cells. This method is especially useful for identifying inhibitors for those ISGs whose transcription is increased by 2-fold or greater by treatment with the interferon.

In another aspect, the present invention provides a method of determining the sensitivity of a patient to prospective interferon therapy. The method comprises exposing cell samples obtained from a patient who is a candidate for interferon therapy to the interferon and measuring the levels of one or, preferably, a plurality of the ISG and IRG transcripts that are produced in response to the exposure. An increase in the levels of ISG transcripts and a decrease in the level of IRG transcripts in the interferon treated cells relative to the levels found in untreated control cells indicates that the patient is responsive to treatment with the interferon. A finding of no or little difference in the levels of ISGs and IRGs transcripts in the interferon-treated cells and control cells indicates that the patient is not responsive to treatment with the interferon.

In another aspect the present invention provides a method for monitoring the efficacy of interferon therapy in a patient. The method comprises measuring levels of transcripts of one or, preferably, a plurality of ISGs which are known to be stimulated by the interferon in a first cell sample obtained from the patient prior to administration of the interferon and in a second cell sample obtained from the patient subsequent to administration of the interferon. An increase in levels of the ISG transcript in the sample obtained from the patient subsequent to treatment relative to the sample obtained from the patient prior to treatment indicates that the patient is responsive to treatment with the interferon at the dosages administered.

In another aspect the present invention provides a method for monitoring the expression of genes which are specifically regulated by INF-β and therefore will determine the efficacy of INF-β therapy.

In another aspect the present invention provides a method for diagnosing the presence of viral infection in a patient. The method comprises assaying for elevated levels of transcripts of one or, preferably, a set of ISGs in cells which have been obtained from the patient relative to levels found in healthy subjects.

In another aspect the present invention relates to a method of identifying new ISGs and IRGs, particularly the ISGs and IRGs whose expression is regulated by IFN-β. The method comprises administering interferon to cultured cells for a period of time, such as for example 2 hours, 4 hours, 6 hours or 8 hours, measuring the levels of gene transcripts from untreated control cells and in cells treated with the interferon using arrays which comprise probes that are known to hybridize with transcripts of known ISGs and IRGs and with transcripts of genes whose products are not known to be ISGs or IRGs; and comparing the levels of transcripts for each gene in the control and interferon-treated cell cultures to provide a set of genes that are stimulated by treatment with interferon and a set of genes that are repressed by treatment with the interferon.

DETAILED DESCRIPTION OF THE INVENTION

The mRNA profiles from IFN-α, -β or -γ treatments of the human fibrosarcoma cell line, HT1080, were determined using oligonucleotide arrays with probe sets corresponding to more than 6800 human genes. Among these were transcripts for 48 known IFN-stimulated genes, the expression of which were consistent with previous studies in which the particular ISG was characterized as responsive to either Type I (α, β) or Type II (γ) IFNs, or both. Novel IFN stimulated genes were identified which were diverse in their known biological functions and included genes implicated in regulating apoptosis (RAP46/Bag-I and phospholipid scramblase), stress-activated protein kinase pathways (mixed lineage kinase-2), and growth factor signaling (vascular endothelial growth factor-related protein). Furthermore, gene transcripts were also identified whose expression was reduced by IFNs including COX17, histone H4, and TRAF6. These results demonstrate the usefulness of arrays comprising gene probes in monitoring the effect of IFNs on mammalian gene expression.

In accordance with these findings, new model systems useful for identifying new therapeutic agents and for identifying the biochemical pathways by which IFNs mediate their therapeutic effects are provided.

In one aspect the model system is a customized array which comprises gene probes that hybridize with from about 100 to about 5000 ISG and IRG transcripts. As used herein the term “array” refers to an arrangement of the gene probes on a substrate or support system. Preferably, the gene probes are arranged in a particular order and attached to the substrate or support system. As used herein the term “ISG” refers to any mammalian gene whose expression is increased at least 1.2 fold in cells treated with an interferon. (See Table 4 or the data set displayed at www. lerner.ccf.org/ri/labs/williams.html for a list of such genes.) As used herein the term “IRG” refers to any mammalian gene whose expression is decreased at least 1.2 fold in cells treated with an interferon. (See Table 4 or the data set displayed at the above-described website for a list of such genes.) As used herein the term “interferon” refers to a naturally-occurring interferon, a recombinant interferon which is at least 50% homologous to a naturally occurring interferon, interferon mixtures, and chemically-modified interferons, such as a polyethylene glycol (PEG)-interferon. Naturally-occurring interferons include all subtypes of IFN α, IFN-β, and IFN-γ. Preferably, the array comprises probes to fewer than 100 genes which are not ISGs or IRGs.

Examples of the types of molecules which may be used as a probe are cDNA molecules, oligonucleotides which contain at least 10 nucleotides, preferably from about 10 to about 30 nucleotides, and other gene probes which comprise nucleobases including synthetic gene probes such as, for example, peptide nucleic acids (PNAs). Preferably, the probes are attached to a solid support such as for example a glass substrate. Among the probes are molecules which hybridize under stringent conditions with transcripts of the newly-discovered ISGs shown in Table 2, i.e. the ISGs that are not preceded by a + sign. Preferably, the array comprises probes which hybridize a plurality of the ISGs shown in Table 2 and the IRGs shown in Table 3.

Hybridization conditions are based on the melting temperature (T_(m)) the nucleic acid binding complex or probe, as described in Berger and Kimmel (1987) Guide to Molecular Cloning Techniques, Methods in Enzymology, vol 152, Academic Press. The term “stringent conditions, as used herein, is the “stringency” which occurs within a range from about Tm-5 (5° below the melting temperature of the probe) to about 20° C. below Tm. As used herein “highly stringent” conditions employ at least 0.2×SSC buffer and at least 65° C. As recognized in the art, stringency conditions can be attained by varying a number of factors such as the length and nature, i.e., DNA or RNA, of the probe; the length and nature of the target sequence, the concentration of the salts and other components, such as formamide, dextran sulfate, and polyethylene glycol, of the hybridization solution. All of these factors may be varied to generate conditions of stringency which are equivalent to the conditions listed above.

Alternatively, the customized array comprises probes that hybridize with transcripts of ISGs and IRGs responsive to select interferons or to transcripts of ISGs and IRGs that are highly responsive to one or more interferons. In one embodiment the-array comprises probes to ISGs and IRGs responsive to Type I interferons, including all IFN alpha, IFN beta, IFN-omega, and IFN-tau and lacking probes that hybridize with Type II interferons, including IFN-gamma. In another-array comprises probes that hybridize with transcripts of ISGs and IRGs responsive to Type II interferons, and lacking probes that hybridize with Type I interferons. In another embodiment the array comprises gene probes that hybridize with genes whose expression is decreased or increased at least 3 fold by treatment with a Type I interferon. Preferably, the gene probes on such array hybidize to fewer than 100 different transcripts of genes whose expression is not increased at least 3 fold by treatment with a Type I interferon. In another embodiment the array comprises gene probes that hybridize with genes whose expression is decreased or increased at least 3 fold by treatment with a Type II interferon. Preferably, the gene probes on such array hybidize to fewer than 100 different transcripts of genes whose expression is not increased at least 3 fold by treatment with a Type II interferon.

Methods of Identifying New Therapeutic Agents

The present invention provides novel methods for identifying and characterizing new therapeutic agents, particularly proteins, which mimic the activity of all interferons, Type I interferons, IFN-γ, or select Type I interferons, such as, for example, IFN-β. The method comprises administering an interferon selected from the group consisting of IFN-α, IFN β, IFN-γ, and combinations thereof to a sample or samples of cells, administering the candidate agent to a duplicate sample of cells; and measuring the effect of the candidate agent and the interferon on the transcription or translation of one or, preferably, a plurality of ISGs and IRGs including the new ISGs that are not preceded by a + sign in Table 2. More preferably, the effect of the interferon is measured using a mini-array as described above or an array that comprises gene probes to all of the ISGs and IRGs shown in the attached data set. Preferably, separate cultures of cells are exposed to different dosages of the candidate agent.

Any cell line which is capable of being maintained in culture may be used in the method. Preferably, the cell line is a human cell line, such as, for example, a human fibrosarcoma cell line, Daudi cells, HeLa cells, and human primary cells including peripheral blood mononuclear cells, epithelial cells, endothelial cells, neural cells, muscle cells, or fibroblast cells. Nearly identical amounts of the interferon and the candidate agent are added to the culture medium of separate representative cultures of the cells. The cells are then incubated in the medium for a sufficient amount of time for transcription of the ISGs to occur or for turnover of the basal amounts of mRNA encoded by the IRGs. Preferably the cells are incubated in the medium for about 0.5 hours to about 24 hours, more preferably for from about 1 to about 8 hours. Control cultures are incubated in medium lacking the interferon and the candidate agent.

Alternatively, cells from individuals that have been treated with the interferon or with the agent are used. For example peripheral blood mononuclear cells from such individuals, as well as cells from untreated individuals are used. Preferably, RNA is extracted from such cells, converted to cRNA and used to probe arrays and mini-arrays, as described above.

The effect of the candidate agent on transcription is determined by measuring the relative amounts of the ISG transcripts that are present in the interferon treated cultures and the candidate agent-treated cultures as compared to the control cultures. Preferably, the relative amounts of IRG transcripts that are also present in the control culture, interferon-treated culture, and candidate agent-treated culture are also measured. Alternatively, the relative amounts of transcripts for a preselected subset of ISGs, or a preselected subset of IRGs or a single ISG such as for example, 2-5-A-synthetases, hypoxia inducible factor −1, scramblase, fas, BAK, PKR, RING4(TAP1), LMP7, MHC1, or a single IRG such as for example, bcr, PKD1, and COX17 are measured in the three cultures. The methods are especially useful for identifying therapeutic agents that are more potent than the known interferons and for identifyng therapeutic agents that do not have the same deleterious effects as the interferon which is used in the assay. The method is also useful for identifying IFN mimics that can be used in patients that fail IFN therapy due to anti-IFN antibody production in such patients.

Suitable methods for measuring the relative amounts of the transcripts are Northern blots, RT-PCR, or real-time RT-PCR, or RNase protection assays. For ease in measuring the transcripts for a plurality of the ISGs that are induced by the interferon or for a plurality of the IRGs that are repressed by the interferon, it is preferred that arrays and the mini-arrays as described above be used.

Optionally, the relative amounts of gene products that are produced in response to treatment with the interferon and the candidate therapeutic agent are also measured in the three cultures. In those cases where the gene product is a protein, the method used for assaying production of the gene products include, by way of example, western blots probed with specific antibody to the protein encoded by the ISG or IRG.

In another aspect the present invention provides new methods for identifying and characterizing new therapeutic agents which block the activity of all interferons, Type I interferons, IFN-γ, or select Type I interferons, such as, for example, IFN-β. The method comprises administering an interferon selected from the group consisting of IFN-α, IFN β, IFN-γ, and combinations thereof to a sample or samples of cultured cells, administering the interferon and the candidate inhibitor to a duplicate sample of cells; assaying for differences between the levels of transcription of the ISGs and IRGs in the two samples of cells. The differences are determined by measuring the relative levels of ISG transcripts and IRG transcripts in the cells treated with interferon and no inhibitor and in the cells that are treated with interferon plus the candidate inhibitor. Preferably, the levels of the ISG and IRG transcripts are also measured in untreated control cultures which are incubated in medium lacking both the interferon and the candidate inhibitor. Preferably, the levels of the transcripts of the genes listed in Table 2 and Table 3 are assayed.

Alternatively, cells from individuals that have been treated with the interferon or with the interferon plus the candidate inhibitor are used. For example peripheral blood mononuclear cells from such individuals, as well as cells from untreated individuals are used. RNA is extracted from such cells, converted to cRNA and used in conjunction with an array or mini-array as described above.

This method is especially useful for identifying potential therapeutic agents which block or avoid the unwanted, harmful side-effects of current IFN therapy. The agents which inhibit IFN function, i.e., the IFN antagonists, are useful for treating conditions such as AIDS, SLE, and rheumatoid arthritis, in which IFNs contribute to the disease.

In another aspect the present invention provides new methods for identifying and characterizing new agents which inhibit the transcription or translation of one of the new interferon-regulated genes that have been uncovered by the present study. The method comprises administering the interferon which has been shown to stimulate transcription of a particular gene to a cell culture, administering the interferon and the candidate inhibitor to a duplicate cell culture; and measuring the levels of mRNA or the levels of protein encoded by the gene in the two cell cultures. This method is especially useful for identifying inhibitors for those genes whose transcription is increased by 2-fold or greater by treatment with the interferon.

Method for Determining the Interferon Sensitivity of a Subject

In another aspect, the present invention provides a method of determining the sensitivity of a patient to prospective interferon therapy. The patient may be a veterinary patient or a human patient. The method comprises exposing cell samples obtained from a patient who is a candidate for interferon therapy to the interferon and measuring the levels of one or, preferably, a plurality of the ISG and IRG transcripts that are produced in response to the exposure. Suitable cells include, for example, nucleated blood cells, leukemia cells, tumor cells, liver cells obtained by biopsy. An increase in the levels of ISG transcripts and a decrease in the level of IRG transcripts in the interferon treated cells relative to the levels found in untreated control cells indicates that the patient is responsive to treatment with the interferon. A finding of little to no difference, for example a difference of less than 5%, in the levels of ISGs and IRGs transcripts in the interferon-treated cells and control cells indicates that the patient is not responsive to treatment with the interferon and that treatment with the interferon is not likely to produce the desired therapeutic effect.

Methods of Monitoring the Efficacy of Treatment with Interferon.

In another aspect the present invention provides a method for monitoring the efficacy of interferon therapy in a patient. In one embodiment, the method is used to identify non-responders, i.e., patients who are not expected to be responsive to treatment with a specific interferon or interferon mimic, or to determine minimum dosages which are expected to induce a beneficial therapeutic response in the patient, or to determine optimum dosages of the IFN or IFN mimic. The method comprises obtaining a first sample from the patient, administering the interferon or interferon mimic to the patient, obtaining a second sample from the patient, and measuring levels of a transcript for one or more genes that are down-regulated or upregulated by the interferon. The samples may be blood samples or tissue samples obtained by biopsy. Suitable cells include, for example, nucleated blood cells, leukemia cells, tumor cells, liver cells obtained by biopsy.

Preferably, the levels of one or more of the ISGs identified in Table II as not being known (i.e., the ISGs in Table 2 which are not preceded by a + sign) or one or more of the IRGs in Table 3 are measured. For example, the method may comprise isolating PBMCs from the patient before and after treatment with the IFN, isolating RNA from the PBMCs and performing RT-PCR or Northern blots on isolated RNA to determine if the transcripts of one or more of the IRGs in Table 3 have been downregulated. Alternatively, protein may be extracted from the PBMCs and then assayed by western blots using antibody to one or more of the proteins encoded by the IRGs in Table 3. More preferably the pre-treatment and post-treatment levels of the transcripts of all the ISGs in Table 2 and all the IRGs in Table 3 are determined.

In one preferred embodiment the method comprises administering IFN-β or a candidate INF-β mimic to the patient and measuring the levels of the phospholipid scramblase gene transcript in cells from the two samples, i.e., in cells from the sample obtained prior to administration of the interferon and after administration of the interferon. The levels of phospholipid scramblase gene transcript may be measured in peripheral blood mononuclear cells (PBMCs). A finding that treatment with INF-β or the IFN-β mimic has not elevated the levels of phospholipid scramblase transcript in the sample obtained from the patient as compared to the levels of phospholipid scramblase transcript in the PBMCs obtained from the patient before treatment, i.e., a finding that treatment with INF-β did not upregulate the phospholipid scramblase gene in PBMCs from the patient, indicates that the treatment with the INF-β or IFN β mimic is not likely to produce the desired therapeutic effect. Such method is useful for determining whether treatment with INF-β will decrease the duration and frequency of relapse in a patient with multiple sclerosis. This method is also useful for determining the proper dosing schedule or concentration of INF-β or INF-β mimic that must be used to treat the patient or the modifications to IFN-βw which must be made in order for treatment with IFN-α to have a more positive effect on suppressing disease in the patient. The method is also useful to determine optimum dosages of INF-β or an INF-β mimic.

In another preferred embodiment the method comprises administering IFN-α or IFN-γ to a patient with chronic myelogenous leukemia (CML) and measuring the levels of bcr/abl gene transcript in the leukemia cells from these patients both before and after administration of the IFN-α or IFN-γ to the patient. IFN-α and IFN-γ cause decreases in bcr expression. Because the bcr/abl oncogene which causes CML is also driven by the bcr promoter, IFN-α or IFN-γ treatment is expected to lead to decreases in bcr/abl mRNA levels, thus, leading to a therapeutic benefit for CML patients. Also ex vivo treatments of bone marrow or peripheral stem cell autologous transplants can be treated with IFN-α or IFN-γ as a method for purging the leukemia cells from the transplant.

Method of Diagnosing a Viral Infection in a Patient

In another aspect, the present invention provides a method for diagnosing a viral infection. The method comprises obtaining a cell sample from the patient, and measuring levels of a transcript for a gene which is down-regulated or upregulated by a Type I interferon in the cell sample. Preferably, levels of such transcripts are compared to the levels that are present in healthy subjects, i.e., persons who do not have a viral infection. Preferably, levels of the genes which are listed in Table 2 and Table 3 are measured.

Suitable methods for measuring the relative amounts of the ISG and IRG transcripts are Northern blots, RT-PCR, or real-time RT-PCR, or RNase protection assays. For ease in measuring the transcripts for all of the ISGs that are induced by the Type I interferon or interferons and for all of the IRGs that are repressed by the Type I interferon or interferons, it is preferred that arrays and the mini-arrays as described above be used.

Methods for Identifying Antiviral Proteins

Such methods are based on knowledge of which genes are induced or repressed by IFNs. In one aspect, a human cell line is transfected with a cDNA of an ISG or IRG, preferably a newly-identified ISG or IRG and grown under conditions that permit expression of the ISG or IRG The cells are then challenged with a virus. If the ISG encodes an antiviral protein, virus replication will be inhibited in cells transfected with the ISG cDNA.

Alternatively, the ISG in a culture of human cells is suppressed by transfecting the cells with antisense cDNA, or antisense oligonucleotide, or PNA, or a dominant negative mutant ISG. Cells in which the ISG expression is inhibited or suppressed are expected to have a defect in the biological action of IFNs, such as for instance the antiviral activity of IFN.

Method of Identifying New ISGs and IRGs.

In another aspect the present invention relates to a method of identifying new ISGs and IRGs. The method comprises administering IFN-α and IFN-β, and IFN-γ to separate sets of cultured cells for a period of time, such as for example 2 hours, 4 hours, 6 hours or 8 hours, assaying the transcripts present in untreated control cells and in the IFN-treated sets of cultured cells using arrays comprising probes to genes that are known to be induced or repressed by treatment with one or more interferons and to genes that are not known to be induced or repressed by treatment with one or more interferons. The results of the assay provide a set of genes which are stimulated by IFN-α and IFN-β, IFN-γ or combinations thereof and a set of genes that are repressed by treatment with IFN-α, INF-β , IFN-γ or combinations thereof. Such method is useful for identifying genes that are upregulated or down regulated by all Type I and Type II interferons, genes that are preferentially upregulated or downregulated by a subset of IFNs, e.g. Type I interferons as opposed to Type II interferons, and genes that are exclusively upregulated or down regulated by one interferon, such as for example, IFN-α or one subtype of IFN-α, INF-β, or IFN-γ.

The following examples are for purposes of illustration only and are not intended to limit the scope of the claims which are appended hereto.

EXAMPLE 1

To identify novel ISGs and obtain a comprehensive profile of differential ISG expression by distinct IFNs, oligonucleotide arrays containing probe sets for an 6800 human genes were used to assay for changes in mRNA expression following stimulation of the human fibrosarcoma cell line, HT1080, with either IFNα, -β or γ. Monitoring of gene expression by this method is based on hybridization of labeled RNA populations to high-density arrays of oligonucleotides, synthesized on a glass substrate by a combination of photolithography and conventional oligonucleotide chemistry as described in Fry, A. M., S. J. Schultz, J. Bartek, E. A. Nigg (1995) JBC 270,12899-12905. Several hundred genes were determined to be IFN-regulated including many of which represented novel ISGs. Significantly, the identification of novel ISGs with known biological functions provides new and informative insights into the mechanisms of IFN action.

Materials and Methods

Cell Culture and RNA Isolation. HT1080 cells were cultured using DMEM supplemented with fetal bovine serum (10%) and antibiotics. Cells (10⁷) were plated on 15 cm tissue culture plates and cultured overnight before being treated with 1000 IU/ml of each IFN, IFN-α (IFNalpha2a, Roche, specific activity 2.7×10⁸ IU/mg), IFN-β (IFN-beta, Berlex, specific activity 2×10⁸ IU/mg), or IFN-γ (IFN-gamma, Gibco-BRL, specific activity 10⁷ IU/mg). After treatment with the IFNs for 6 hours, total RNA was isolated (Trizol, Gibco-BRL).

Preparation of cRNA. The methods for preparation of cRNA and subsequent steps leading to hybridization and scanning of the Hu6800 GeneChip Arrays were provided by the manufacturer (Affymetrix). Briefly, poly A+RNA was isolated from 100 μg total RNA of each sample with Oligotex (Qiagen) and converted into double-stranded cDNA using a cDNA synthesis kit (SuperScript Choice, Gibco-BRL) with a special oligo dT(24) primer containing a T7 RNA polymerase promoter site added 3′ of the poly T tract (Genset). After second-strand synthesis, labeled cRNA was generated from the cDNA sample by an in vitro transcription (IVT) reaction (T7 MegaScript System, Ambion) supplemented with biotin-11-CTP and biotin-16-TTP (Enzo Diagnostics). The labeled cRNA was purified using RNeasy spin columns (Qiagen).

Fifty μg of cRNA from each sample was used to prepare 1 ml of master hybridization mix which also contained a cocktail of 4 control cRNAs for bacterial genes, added in known concentrations (BioB, BioC, BioD and cre, at 1.5, 5, 25 and 100 pM, respectively; referred to as “staggered spikes”), to serve as tools for comparing hybridization efficiency between arrays. A biotinylated oligonucleotide, B2, was also added which hybridizes to unique features at the center and 4 comers of each chip to facilitate accurate orientation and mapping of the probe sets.

Microarray Hybridization and Scanning. Fifty μg of each cRNA sample was fragmented by mild alkaline treatment, at 94° C. for 35 min in fragmentation buffer (200 mM Tris-acetate, pH 8.1, 500 mM potassium acetate, 150 magnesium acetate). A final complete hybridization mix for each sample was prepared which contained the fragmented cRNA, 50 pM of a control biotinylated oligonucletide, B2 (Affymetrix), staggered control cRNA cocktail (final concentrations: 1.5 pM BioB, 5 pM BioC, 25 pM BioD and 100 pM cre), 0.1 mg/ml herring sperm DNA (Sigma), and 2×Affy buffer, in 1 ml total volume. Prior to hybridization, the cRNA samples were heated to 94° C. for 5 min, equilibrated to 40° C. for 5 min, and clarified by centrifugation (14,000 g) at room temperature for 5 min. Aliquots of each sample (200 μl) were hybridized to Hu6800 GeneChip arrays at 40° C. for 16 h, in a rotisserie oven set at 60 rpm. The Hu6800 GeneChip array represents a set of 4 individual chips, A-D, each containing unique probe sets to over 1700 genes, collectively representing more than 6800 human genes. Following hybridization, the arrays were washed with 6×SSPE and 0.5×SSPE according to manufacturer's protocol stained with strepavidin-phycoerythrin (Molecular Probes), washed again and read using a confocal microscope scanner with the 560mm longpass filter (Molecular Dynamics, Affymetrix).

Data Analysis. Data analysis were performed using GeneChip 3.0 software. Comparison files were created by scaling the 6 probe sets for 5′, M and 3′ of actin and GAPDH in all data sets to an arbitrary value, 50,000, and normalizing to all genes.

Results

To assess variability in array hybridization and cDNA synthesis efficiency between samples, two types of hybridization controls were examined. Hybridization efficiency between arrays was assessed by comparing the signal intensities for the 4 control bacterial gene cRNA “spikes”, BioB, BioC, BioD and cre, which had been added to the hybridization mixtures at known concentrations (1.5, 5, 25 and 100 pM, respectively). Among the 16 total arrays screened, BioB was usually detected as absent, while BioC, BioD and cre were detected as present in all data sets. This established that, under these hybridization conditions, the lower detection limit was in the range of 1.5 to 5 pM. Each array also contained distinct probe sets corresponding to the 5′, middle (M), and 3′ regions for both actin and GAPDH. The cumulative hybridization intensities for either of these gene transcripts were used to provide normalization between different RNA samples, as is commonly done in conventional mRNA detection methods. Furthermore, the efficiency of full-length cDNA synthesis for a given cRNA sample can be assessed by comparing the respective 3′ signal intensities to that of the upstream 5′ and middle regions.

Since each sample was hybridized to 4 separate DNA arrays, it was essential to determine the consistency among arrays by calculating the average intensities for all of the actin and GAPDH probe set among the data sets (See Table 1 below). Importantly, the average hybridization signals for each of the 6 different actin and GAPDH probe sets differed by less than 20% among the four samples. To compare the efficiency of cDNA synthesis between samples, the ratios for the 5′ and middle intensities relative to the 3′-intensities were calculated for actin and GAPDH. Among the 4 samples, the intensities for 5′-GAPDH signals were 81-86% of the 3′-GAPDH intensities, while M-GAPDH signals were 101-110% of the 3′-GAPDH values; the 5′- and M-actin intensities relative to that of the 3′-actin values, were 130-146% and 146-157%, respectively. The higher signal intensities for the M- and 5′-GAPDH regions as compared to the 3′-region are reflective of the intrinsic hybridization characteristics of these probes sets. Also, a high degree of similarity was observed in the overall patterns of 5′, middle, and 3′ intensities between samples. Specifically, the 5′-actin intensities were lower than M-actin, but higher than 3′-actin signals in all 4 samples; all M-GAPDH intensities were uniformly higher than those of the 3′-GAPDH regions which, in turn, were higher than M GAPDH signals. Taken together, these data indicate that a high level of both efficiency and consistency was achieved in the cDNA and cRNA synthesis for these 4 samples.

TABLE 1 Average intensity values for actin and GAPDH. The average intensity values for the probe sets indicated were calculated from the respective values obtained by hybridization of each sample to the 4 arrays which comprise a Hu6800 GeneChip set. Sample 5′ M 3′ Actin 1 5662(1.46)  6089(1.57) 3875(1) 2 7195(1.30)  8073(1.46) 5532(1) 3 7311(1.33)  8167(1.48) 5484(1) 4 7860(1.49)  8254(1.56) 5281(1) GAPDH 1 6314(0.82)  8493(1.10) 7707(1) 2 8107(0.86) 10230(1.09) 9417(1) 3 6949(0.81)  8635(1.01) 8542(1) 4 8101(0.85) 10319(1.09) 9441(1)

We next determined which gene transcripts were detectable and their respective signal intensities. The total number of mRNAs detected as present among the 4 samples was similar: untreated, 2207; IFN-α, 2225; IFN-β, 2403; and IFN-γ 2320. The intensities for gene transcripts detected as present represented a range spanning 3 orders of magnitude, from approximately 20 to the highest recorded value of 18,524 for metallothionein. The majority of these mRNAs, approximately 85-90%, were detected with intensities of less than 1000. The genes associated with intensities greater than 1000 (˜300 genes) include many of the ribosomal genes and commonly known high-abundance genes such as tubulin, elongation factor 1-a and ubiquitin. It is interesting to note that among this set of highly abundant mRNAs, stimulation by any of the 3 IFNs did not cause dramatic changes in their expression levels, with any detectable changes being less than 2-fold. The singular exception was β2 microglobulin, a known ISG, with a basal expression level of 1111 that was increased 1.9-, 2.3- and 1.3-fold, respectively, by IFN-α, -βor -γ (Table 2).

To identify IFN-regulated genes, pairwise comparisons were generated between the data sets from each of the IFN-treated samples and the untreated HT1080 cell data set. Over 1000 genes were identified whose mRNA expression levels changed following IFN stimulation (See FIG. 4 and the data set posted at www.lerner.ccf.org/ri/labs/williams.html). The majority of these (>75%) represented genes for which the degree of change was less than 2-fold. The number of genes whose expression changed more than 10-, 4- or 2-fold was 10, 26 and 94 for IFN-α; 14, 56 and 268 for INF-β; and 4, 25 and 129 for IFN-γ, respectively.

To select the genes most likely to represent IFN-regulated genes which are strongly induced or repressed by IFNs, we empirically tested different criteria to make further selections from the list of over 1000 differentially expressed genes. By using known ISGs as “guideposts”, we determined reasonable but conservative delineations for fold change values. After applying a given criteria to yield a shortened list of genes, its effectiveness was assessed by the number of known ISGs remaining and in particular, how many remained near the bottom of the list. Three criteria were ultimately applied to generate a list of 128 genes (Table 2): 1) gene transcripts with at least 4-fold increased expression by any IFN type, 2) gene transcripts with at least 3-fold increase by any IFN type and detected as absent in untreated HT1080 cells, and 3) gene transcripts with at least 2-fold increase in response to all 3 types of IFNs. These genes were then ordered in 3 subgroups by first listing genes on the basis of highest fold change in response to IFN-α, followed by responses to INF-β and finally, IFN-γ. A useful aspect of the GeneChip 3.0 software involves the special identification of genes whose expression was called as absent from the untreated or baseline sample, but present in the IFN-treated sample. In these cases, the fold change is calculated by dividing the intensity value for the gene from the IFN treated data set, by an arbitrary value of 20 (which approximates the lower limit of detection) and thus, the calculated fold change most likely represents a underestimation of the true fold change. The genes falling into this category are identified in Table 2 with a “greater than” sign (>) preceding the fold change value.

Among the 128 genes in Table 2, at least 48 genes represent known ISGs as indicated in previous published studies while the remaining 80 represent novel IFN-regulated genes. The characteristic induction profiles for these genes allows for them to be categorized as 1) genes which are induced by all 3 types of IFNs, 2) genes inducible by IFN-α or IFN-β, 3) genes preferentially induced by IFN-β, and 4) genes preferentially induced by IFN-γ; 9-27, 2-5A synthetase, HIF-1 and IRF-1 represent examples for each of categories, respectively (FIG. 1, Table 2). There were no convincing examples of genes preferentially induced by IFN-α but not by IFN-β. While there are examples of genes listed in Table 2 with significant fold increases in response to IFN-α, but with 0 representing the fold increase by INF-β, the respective IFN-induced intensity values are in fact similar. As examples, the respective IFN-α- and INF-β treated intensities for alpha-1 type XVI collagen are 220 and 184, and for PML-I are 84 and 88, despite 0-fold increase by IFN-β displayed for both genes. When analyzing two data sets, the GeneChip software uses a decision matrix which includes other parameters in addition to the net change in intensity values, in order to decide whether a given gene is differentially expressed. Consequently, once a decision is made that there was no significant difference in expression, “0” is automatically entered as the fold change value for that gene regardless of the actual ratio between the two intensity values. Therefore in the overall analysis, it is important to consider actual intensity values in addition to the fold-change.

The results for specific known ISGs are as follows: 6-16 was absent in untreated cells and induced at least 20- and 21-fold by IFN-α or INF-β respectively, but not at all by IFN-γ. 9-27 was induced 23- and 22-fold by IFN-α or INF-β and 8-fold by IFN-γ (FIG. I and Table 2). The consistency between our data and previous studies regarding IFN-specific inducibility further extends to several other genes.

ISGs which are preferentially induced by IFN-α but not IFN-γ include the 2-5′ oligoadenylate synthetase family of genes, MxA and MxB genes, and the gene family comprising ISG54, ISG56, ISG58, and RIG-G. ISGs preferentially induced by IFN-γ include IRF-1, IP-30 and IITA; ISGs which are responsive to both IFN-α and IFN-γ include MHC Class I genes, STATI and GBP. The differential induction of 2-5A synthetase mRNA by IFN-α and IFN-γ was confirmed by Northern blot analysis prior to using the same RNA samples to prepare cRNA for this analysis. It is noteworthy that although the mRNA expression profiles for most of the above genes were established using a variety of different cell types including HeLa, Daudi and NB4 cells, their IFN-specific induction characteristics were similar in HT 1080 cells.

In the analysis of our data using known ISGs as guideposts, we determined that it was reasonable to attribute greater significance towards genes whose expression levels changed from absent in untreated cells to detectable in IFN-treated cells. The 3 criteria we applied to select the 128 IFN-regulated genes described in Table 2 represent conservative cutoffs. Known ISGs were also among the hundreds of genes which were originally detected as differentially expressed but excluded by our cutoff criteria and therefore, by inference, other genuine and novel ISGs were also likely represented. It is possible that the mRNA levels for many genuine ISGs simply do not change by more than 3-fold at the 6 h timepoint we used to prepare cRNA. These results demonstrate that the present method of using oligonucleotide arrays to identify ISGs is effective.

The results for specific unknown ISGs are as follows: The expression levels of scramblase were increased 8- and 10-fold by IFN-α and INF-β, respectively, while IFN-γ conferred a more modest 3-fold increase (Table 2). This enzyme has an important role in the apoptosis programmed by flipping phosphatidylserine from the inner to the outer leaf of the cell membrane. Exposed phosphatidylserine serves as a surface marker for recruited phagocytes to recognize and eliminate apoptotic bodies. Therefore, increased levels of phospholipid scramblase in response to IFN may serve as a mechanism which enables more efficient removal of virus-infected cells undergoing apoptosis. Two anti-apoptotic IFN-regulated genes were identified. Expression of RAP46, the human homologue for the mouse gene, BAG-1, was consistently induced about 3-fold by all IFNs. In addition, BcI-2 expression was modestly increased by IFN-α or IFN-β.

Our analysis has now identified several IFN-regulated serine/threonine kinase genes. For example, mixed lineage kinase 2 (MLK2) was inducible by all 3 IFNs. MLK2 has been characterized as a participant in the JNK/SAPK pathway, capable of activating SEK1 and MKK7. Thus, IFNs may sensitize JNK/SAPK signaling pathways by upregulating MLK2.

Previously, βRI. was the only known ISG which is selectively induced by IFN-β, but not IFN-α nor IFN-γ. Our data identifies over 20 potential candidate genes whose mRNA levels are upregulated by IFN-β but not by IFN-α. These include a gene encoding a clathrin-like protein, PKR, hypoxia-inducible factor (HIF-1), and the fos family member, Fra-1. Two other candidate IFN-β-specific genes are ISG54 and ISG58. Interestingly, the two other members of this gene family, ISG56 and RIG-G, both exhibit a consistently higher level of inducibility in response to INF-β as compare to IFN-α (Table 2). Other genes which also appear to be preferentially induced by INF-β over IFN-α include IFI16, STATI, and GBP-2. Although probe sets for βR1 are encoded on the Hu6800 set of chips, no basal nor inducible expression of βR1 was detectable among of our samples, possibly because βR1 mRNA levels usually peak later than the 6 h timepoint used in this study.

Unexpectedly, PKR was characterized by the oligo array data as inducible by INF-β, but not IFN-α. However, as evident from Table 2, the actual untreated and IFN-α-treated intensities for PKR are 42 and 83, respectively, a 2-fold increase. Previous studies involving Northern blot and nuclear run-on analyses determined that PKR gene transcription in Daudi cells reaches maximal levels 2 hours following IFN-α stimulation and that PKR mRNA levels are significantly elevated by 4 hours. These results suggest the intriguing possibilities that not only may PKR be preferentially induced by IFN-β, cellular background may also contribute distinct characteristics to the profile of PKR mRNA induction by distinct IFN subtypes. Furthermore, the concept of differential responsiveness by certain IFNs in a cell type-specific manner may also be generalized to other ISGS,

Stimulation by either IFN-α or IFN-γ resulted in similar results, approximately 100 genes with differences greater than 2-fold, and 25 genes with greater than 4-fold change. INF-β stimulation, on the other hand, resulted in more than double these amounts, 268 genes with greater than 2-fold increases, and 56 genes with greater than 4-fold change. Since the molar amounts of IFN-α and -β protein used in our experiments were similar and the respective intensity values for the majority of ISGs induced by both IFN-α and IFN-β were also generally similar, this suggests that IFN-β may regulate a wider range of ISGs, at least in fibrosarcoma cells. In addition, it also suggests that ISGs which are inducible by IFN-α or INF-β may be distinguished into 3 categories, ISGs which are similarly regulated by IFN-α/β, ISGs which are preferentially regulated by INF-β and ISGs which are differentially regulated by IFN-α and IFN-β but still inducible by both. We did not detect ISGs which are preferentially induced by IFN-α but not IFN-β.

Genes which were not previously known to be preferentially regulated by IFN-α include the IL-15α receptor and NF-IL6α. The AAD14 gene was upregulated 3 fold by IFN-γ and while it encodes for a protein of unknown function, mutant alleles of this gene having expanded CAG repeats are present in patients with spinocerebellar ataxia.

Finally, a group of genes exhibited decreased mRNA levels following IFN treatment. By applying 2 criteria, any genes with at least 3-fold decrease by any IFN and genes with at least 2-fold decrease by all 3 IFNs, 12 genes were identified as IFN-repressed genes (Table 3). These genes include the histone H4 gene and the COX 17 gene. Expression of the histone H4 gene is known to be cell cycle-regulated and is coupled to DNA replication and G1/S transition. The reduction of histone H4 mRNA levels by all 3 IFNs may represent one of the regulatory mechanisms required for IFN-induced growth arrest. COX17 has been best characterized in yeast as a specific transporter of copper ions to enzymes such as cytochrome oxidase and copper/zinc superoxide dismutase. Expression of the zinc transporter, ZnT-3, was also decreased by INF-β but it is not known whether ZnT-3 has any role in regulating superoxide dismutase enzymes. ZnT-3 and four other genes, clone 23748, clone 1D2, C1 and insulin-like growth factor 2 (IGF-2), all appear to be preferentially downregulated by IFN-β, but not IFN-α or IFN-γ. IGF-2 has previously been shown to be downregulated by IFN-γ and this was suggested as a possible mechanism involved in IFN-γ-mediated growth inhibition. Such genes may serve as better markers to monitor the effectiveness of IFN therapies.

Table 2. Genes Upregulated by IFNs. IFN-regulated genes identified by GeneChip analysis were divided into three subgroups, separated by a space. The first subgroup was organized in decreasing order on the basis of fold increase in response to IFN-α, while the second and third were similarly ordered by decreasing fold increase in response to IFN-β and IFN-γ, respectively. A plus sign in the “Known ISG” column indicates that previous studies had identified the given gene as being regulated by IFNs. An asterisk beside an intensity value indicates that the given-gene transcript was determined by the GeneChip software as absent from that particular sample. A “greater than” sign (>) beside a fold increase value for a given gene indicates that this likely represents an underestimation since expression of the gene was determined as absent in the untreated sample and consequently, the GeneChip software used 20 as an arbitrary divisor in order to calculate the fold change for the IFN-treated sample.

TABLE 2 IFN- alpha IFN- beta IFN- gamma GenBank Known Gene Untreated Fold Fold Fold Accession ISG Description Intensity Intensity Increase Intensity Increase Intensity Increase M24594 + ISG-56K 16 * 588 >29.4 2492 >124.6 15 0 X02875 + 2-5A synthetase 18 * 584 >29.2 505 >25.2 24 0 (1.8 kb RNA) X57522 + RING4 29 * 800 28 602 21 1407 49.2 J04164 + 9-27 62 * 1431 23.2 1349 21.9 504 8.2 M33882 + MxA 19 * 426 >21.3 625 >31.3 25 0 M13755 + IFN4nduced 148 3054 20.7 2409 16.3 268 1.8 17/15-kDa protein U22970 + 6-16 −12 * 405 >20.2 433 >21.7 −7 .0 U52513 + RIG-G 19 * 358 >17.9 583 >29.2 63 >3.1 M62800 52-kD SS-A/Ro −34 * 204 >10.2 131 >6.6 126 >6.3 autoantigen M87503 + p48ISGF3γ 50 * 499 10.1 478 9.6 392 7.9 U72882 + IFP35 55 460 8.4 395 7.2 258 4.7 Z14982 + LMP7 47 * 389 8.3 342 7.3 535 11.4 AF008445 Phospholipid 72 594 8.2 723 10.0 268 2.9 scramblase X02874 + 2-5A synthetase 33 * 262 8 217 6.6 43 0 (1.6 kb RNA) L22342 + IFN-induced 4 * 156 >7.8 199 >10.0 119 >6.0 nuclear phosphoprotein M30818 + MxB 3 * 114 >5.7 254 >12.7 36 0 M97936 + STAT1 (84 −31 * 111 >5.6 224 >11.2 40 >2.0 kDa) U43142 VEGF-C/VRP 37 * 198 5.3 150 0 264 7.1 M87434 + 2-5A synthetase 10 * 104 >5.2 181 >9.1 25 0 (71 kDa) Z36591 RAP46/Bag-1 −2 * 99 >5.0 134 >6.7 86 >4.3 X74262 RbAp48 24 * 119 5 175 7.3 100 4.2 D49824 Human HLA-B 79 395 5 527 6.7 360 4.6 null allele M63838 + IFI 16 8 * 98 >4.9 254 >12.7 67 >3.3 M97935 + STAT1 (91 52 258 4.9 446 8.5 155 3 kDa) D50919 KIAA0129 33 155 4.7 198 6 76 0 M92642 Alpha-1 type 43 * 179 4.2 153 0 190 4.4 XVI collagen M55542 + GBP-2 12 * 82 >4.1 175 >8.7 147 >7.3 X14454 + IRF-1 22 * 88 4 117 5.3 682 31.1 M79463 + PML-2 70 280 4 279 4 250 3.6 X82200 + Staf50 mRNA 46 177 3.9 274 6 55 0 X66401 + LMP2 108 388 3.6 250 2.3 581 6.4 D28137 BST-2 22 * 86 3.9 100 4.5 32 1.4 X90846 Mixed lineage 17 * 71 >3.6 95 >4.8 95 >4.8 kinase 2 X04602 Interleukin 21 * 76 3.6 65 3.1 65 3 BSF-2 U59321 DEAD-box −37 * 70 >3.5 32 >1.6 −32 0 protein p72 U04285 Lysosomal acid 17 * 69 >3.5 81 >4.0 31 0 lipase (LIPA) M79462 + PML-1 35 * 121 3.5 134 0 124 3.6 M24470 Glucose-6-P 18 * 68 >3.4 71 0 45 0 dehydrogenase U89606 Pyridoxal 28 * 89 3.2 168 6 93 0 kinase U83463 Scaffold protein 13 * 64 >3.2 64 0 37 >1.9 Pbp1 J04080 + Complement 11 * 62 >3.1 65 >3.3 103 >5.2 component C1r U32849 Hou 18 * 59 >3.0 92 >4.6 49 >2.4 M20022 + MHC Class 1 151 445 3 536 3.6 912 6.1 X58536 + MHC Class 1 120 337 2.8 363 3 276 2.3 D28915 Hepatitis C- 27 * 74 2.8 128 4.8 26 0 associated p44 L40387 TRIP14 117 * 318 2.7 416 3.5 110 0 M22877 Somatic 93 253 2.7 333 3.6 163 1.7 cytochrome c U09825 Acid finger 76 * 200 2.6 214 2.8 153 2 protein X15949 + IRF-2 5 * 50 >2.5 77 >3.9 42 0 U41515 DSSI 67 168 2.5 201 3 117 1.8 X83492 + Fas/Apo-I 6 * 48 >2.4 51 0 52 >2.6 L14778 PPP3CA 7 * 47 >2.4 76 >3.8 26 >1.3 X61123 BTG1 80 192 2.4 158 2 183 2.3 J04611 Lupus p70 (Ku) 524 1250 2.4 1253 2.4 1025 2 autoantigen X75755 PR264 150 364 2.4 342 2.3 326 2.2 D89052 Proton-ATPase- 408 912 2.2 720 1.8 1005 2.5 like protein U84573 PLOD2 58 28 2.1 162 2.8 23 2.5 U10439 + DsRNA 152 324 2.1 450 3 304 2 adenosine deaminase Z47087 Pol II 134 263 2 201 1.5 238 1.8 elongation factor-like protein M94556 Mitochondrial 309 542 1.8 619 2 581 1.9 SSB D32129 + HLA class-I 252 449 1.8 461 1.8 518 2.1 (HLA-A26) heavy chain J00105 + Beta-2 1019 1700 1.7 2150 2.1 1296 1.3 microglobulin L25081 GTPase (rhoC) 432 696 1.6 652 1.5 912 2.1 U20998 SRP9 105 157 1.5 277 2.6 137 1.3 X95648 eIF-2B alpha 90 138 1.5 167 1.9 196 2.2 subunit U07802 TisIId 10 * 28 >1.4 39 >2.0 30 >1.5 U49837 LIM protein −16 * 26 >1.3 50 >2.5 24 >1.2 MLP X16707 Fra-1 18 * 44 0 214 >10.7 254 >12.7 M21388 Unproductively −7 180 0 193 >9.7 251 >12.5 rearranged IgM D38293 Clathrin-like 28 * 27 0 246 8.9 15 0 protein Y09836 3′UTR of 11 * −19 0 150 >7.5 35 0 unknown protein U22431 Hypoxia- 29 * 33 0 204 7.1 50 0 inducible factor −1 M35663 + Pkr 39 * 68 0 271 7 33 0 X89416 Protein 49 103 0 305 6.2 160 3.3 phosphatase 5 U88047 DRX −40 * 77 0 107 >5.4 106 0 Z50194 PO-rich protein 46 103 0 245 5.3 210 4.5 U41766 MDC9 25 * 30 0 135 5.3 19 0 U79291 Clone 23721 16 * −2 0 97 >4.9 20 0 U58046 p167 21 17 0 100 4.7 14 0 D79999 KIAAo177 32 * 21 0 140 4.4 43 0 U41387 Gu protein 53 56 0 226 4.3 57 0 X63563 RNA 56 105 1.9 230 4.1 88 0 polymerase II140 kDa X70649 Clone 1042 of 49 * 81 0 199 4.1 50 0 DEAD box family D29640 KIAA0051 26 32 0 103 4 37 0 Z29064 AF-1p 23 * 54 2.4 88 3.9 42 1.8 D79986 K1AA0164 4 * 30 0 76 >3.8 19 0 U44378 DPC4 15 * 34 >1.7 77 >3.8 16 0 J03473 Poly (ADP- 61 130 0 224 3.7 146 2.4 vibose) polymerase D90070 PMA- 4 * 28 >1.4 69 >3.5 42 >2.1 responsive gene (APR) D63875 KIAA0155 14 13 0 70 >3.5 26 0 M85164 SAP-1 11 * 21 0 67 >3.4 32 >1.6 U34605 + ISG-58K 8 * 15 0 66 >3.3 20 0 D14043 MGC-24 55 94 1.7 182 3.3 33 0 J04102 Ets-2 20 * 14 0 67 3.3 34 0 D16481 Mitochondrial 45 * 86 0 147 3.2 103 2.3 3-ketoacyl- CoA thiolase * Z69915 Clone 23 * 28 0 73 3.2 28 0 ICRFp507L187 6 X98260 M-phase −9 * 7 0 61 >3.1 −6 0 phosphoprotein, mpp11 M14660 + ISG-54K −62 * −5 >1.0 61 >3.1 −4 >1.0 M82882 Human cis- 2 * 21 0 63 >3.1 9 0 U05040 acting sequence FUSE binding 60 * 84 0 189 3.1 63 0 protein M28249 Collagen 31 * 28 0 97 3.1 22 0 receptor alpha- 2 subunit X74039 uPA receptor 22 * 52 0 68 3.1 49 0 M83216 Caldesmon 3 * 9 0 62 >3.1 5 0 AB001106 Glia maturation 6 * 14 0 61 >3.0 21 0 factor U19252 Putative 11 * 24 0 59 >3.0 30 0 transmembrane protein M63896 TEF1 15 * 22 0 59 >3.0 9 0 X54326 Glutaminyl- 49 * 39 0 150 3 44 0 tRNA synthetase J03909 + IP-30 4 * 44 >2.2 35 >1.8 239 >12.0 U82987 BcI-2 binding −27 * 46 >2.3 8 0 102 >5.1 component 3 (bbc3) M83667 NF-IL6- beta 24 30 0 59 2.5 108 4.5 M24283 + ICAM-1 −8 * −4 0 −15 0 86 >4.3 U63824 RTEF-1 40 * 87 2.2 64 0 162 4 M21533 + MHC Class 1 239 * 437 1.8 517 2.2 938 3.9 X96752 L-3- 17 * 32 0 50 >2.5 77 >3.8 hydroxyacyl- CoA dehydrogenase U31628 IL1 5RA 36 * 87 0 111 0 135 3.8 X85237 Splicing factor 52 * 49 0 101 0 192 3.7 SF3al20 X98172 MACH-1 23 * 53 2.3 65 2.8 74 3.2 X71874 MECL-1 184 312 1.7 292 1.6 563 3.1 X84213 + BAK 57 78 0 82 0 190 3.3 U18009 Human 17q21 30 * 64 0 52 0 94 3.1 clone LF 113 U65011 PRAME 37 * 72 0 67 0 111 3 L07633 IFN-γ- 250 478 1.9 411 1.6 714 2.9 tinducible gene, I-5111

TABLE 3 Genes downregulated by IFNs. IFN- alpha IFN- beta IFN- gamma GenBank Gene Untreated Fold Fold Fold Accession Description Intensity Intensity Increase Intensity Increase Intensity Increase L77701 COX17 107 17 >5.3 60 0 28 3.8 D86971 KIAA0217 74 14 >3.7 63 0 54 1.4 U07000 BCR 77 24 3.2 30 0 21 3.7 M16707 Histone H4 62 8 >3.1 1 >3.1 −16 >3.1 U60062 FEZ1-T 60 22 2.8 30 0 18 >3.0 U62962 Int-6 237 121 2 473 (2) 158 1.5 Z78289 clone 1D2 182 101 0 24 7.6 151 0 X03562 Insulin-Like 129 92 0 0 >6.4 115 0 Growth Factor 2 U79294 clone 23748 366 140 2.6 74 5 165 0 X78817 H. sapiens partial 206 145 0 46 4.5 175 0 C1 mRNA U76010 Zinc transporter 469 289 0 118 4 296 0 ZnT-3 U62437 Nicotinic 78 −11 0 −28 >3.9 20 0 acetylcholine receptor U61232 Tubulin-folding 69 51 0 10 >3.5 51 0 cofactor E U30894 N- 71 39 0 16 >3.5 56 0 sulphoglucosamine sulphohydrolase U82311 Unknown protein 231 187 1.2 66 3.5 200 0 X17025 Homolog of IPP 109 55 0 147 0 8 >5.5 isomerase U78798 TRAF6 117 44 0 41 2.8 28 4.1 Z31695 Inositol 79 37 0 50 0 17 >3.9 polyphosphate 5- phosphatase. M15841 U2 RNA- 129 104 0 121 0 38 3.4 associated B antigen X97748 PTX3 90 63 0 107 0 26 3.5 L33243 Polycystic kidney 60 33 0 38 0 4 >3.0 disease 1 protein

EXAMPLE 2

Murine ISGs and IRGs were identified from cultures of primary mouse embryo fibroblasts prepared from C57/B16 mice at 16 days of gestation. Cells were treated for 6 hours with 10,000 units per ml of IFN-αBBDB. Total/mRNA was isolated from treated and untreated control cells as described above in Example 1. The levels of transcripts in the untreated and treated cells were assayed using Mu6500 chip set which contains probes to about 6500 rodent genes. The results are shown in Table 5. A subset of the genes stimulated or repressed by treatment with the interferon are shown in Table 7As shown in Table 5 and 7 below, a number of murine genes are stimulated or repressed by treatment with the interferon. Some of these genes are the murine or rat homolog of the human genes identified in Example 1 above. Because the array contains probes to rodent genes which have no counterpart on the Hu6800 GeneChip Arrays, these results also identify novel ISGs and IRGs that were not identified in Example 1.

EXAMPLE 3

Murine ISGs and IRGs were identified from cultures of primary mouse embryo fibroblasts incubated in the presence or absence of encephalomyocarditis virus and IFN-αBBD. Fibroblasts were obtained as described in Example 2 and The levels of transcripts in cells incubated in the presence of IFNα-BBDB and in the presence and absence of virus and in cells incubated in the absence of IFN-αBBDB and in the presence and absence of virus were assayed as described above in example 2. The results are shown in Table 6 below. These results shows that virus enhances the expression of certain IFN-a stimulated genes (see Table 8) and represses expression of certain IFN-a stimulated genes.

TABLE 4 ISGs and IRGs identified from human fibrosarcoma cells incubated in IFN-α, IFN-β or IFN-γ Un- treated IFN-a IFN-b IFN-g GenBank In- In- Incr Fold In- Incr Fold In- Incr Fold Accession. Entrez Definition — Afix Definition tensity B = A tensity Decr Change Sig tensity Decr Change Sig tensity Decr Change Sig X67325 H. sapiens p27 mRNA −7 * 1423 I ˜70.8 30.33 1018 I ˜50.6 23.03 167 I ˜8.0 3.23 M13755 Human interferon-induced 17-kDa/15-kDa protein “mRNA,” complete cds 148 2906 I 20.7 26.59 2262 I 16.3 20.49 120 MI 1.8 0.26 J04164 Human interferon-inducible protein 27-Sep “mRNA,” complete cds 62 * 1369 I 23.2 19.36 1288 I 21.9 18.22 442 I 8.2 5.37 X57522 H. sapiens RING4 cDNA 29 * 771 I 28 15.87 573 I 21 11.89 1379 I 49.2 26.56 M24594 Human interferon-inducible 56 Kd protein “mRNA,” complete cds 16 * 572 I ˜29.4 13.97 2477 I ˜124.6 46.62 0 NC 0 0 X02875 Human mRNA (3′-fragment) for (2′-5′) oligo A synthetase E “(1,8” kb RNA) — Also Rep 18 * 566 I ˜29.2 13.84 486 I ˜25.2 12 6 NC 0 0 M33882 Human p78 protein “mRNA,” complete cds 19 * 407 I ˜21.3 10.07 606 I ˜31.3 14.77 6 NC 0 0 U22970 16 Jun gene (interferon-inducible peptide precursor) extracted from Human interferon −12 * 417 I ˜20.2 9.93 446 I ˜21.7 10.63 6 NC 0 0 U52513 Human RIG-G “mRNA,” complete cds 19 * 338 I ˜17.9 8.33 564 I ˜29.2 13.82 43 I ˜3.1 0.49 M87503 Human IFN-responsive transcription factor subunit “mRNA,” complete cds 50 * 449 I 10.1 6.48 428 I 9.6 6.11 342 I 7.9 4.58 AF008445 Homo sapiens phospholipid scramblase “mRNA,” complete cds. /gb = AF008445 /ntyp 72 521 I 8.2 5.86 650 I 10 7.76 135 I 2.9 0.75 U72882 Human interferon-induced leucine zipper protein (IFP35) “mRNA,” partial cds — Also 55 405 I 8.4 5.28 340 I 7.2 4.18 203 I 4.7 1.98 Z14982 MHC-encoded proteasome subunit gene LAMP7-E1 gene (proteasome subunit LMP 47 * 342 I 8.3 4.77 295 I 7.3 3.91 488 I 11.4 7.45 M62800 Human 52-kD SS-A/Ro autoantigen “mRNA,” complete cds −34 * 238 I ˜10.2 4.74 165 I ˜6.6 2.62 160 I ˜6.3 2.47 X02874 Human mRNA for (2′-5′) oligo A synthetase E (1,6 kb RNA). 33 * 229 I 8 3.78 184 I 6.6 2.8 10 NC 0 0 L22342 Human nuclear phosphoprotein “mRNA,” complete cds 4 * 153 I ˜7.8 3.01 195 I ˜10.0 4.21 115 I ˜6.0 1.97 D49824 Human HLA-B null allele mRNA — “Also Represents: L42345, L11570, L11571, HG29 79 317 I 5 2.69 449 I 6.7 4.46 282 I 4.6 2.25 M97935 Human transcription factor ISGF-3 mRNA sequence — Also Represents: HUMISGF3A 52 205 I 4.9 2.11 394 I 8.5 5.27 103 I 3 0.7 U43142 Human vascular endothelial growth factor related protein VRP “mRNA,” complete cds 37 * 161 I 5.3 2.05 113 NC 0 0 227 I 7.1 3.35 M97936 Human transcription factor ISGF-3 mRNA sequence −31 * 142 I ˜5.6 2.01 255 I ˜11.2 5.3 70 I ˜2.0 0.24 M30818 Human interferon-induced cellular resistance mediator protein (MxB) “mRNA,” compl 3 * 111 I ˜5.7 1.84 251 I ˜12.7 5.76 32 NC 0 0 M79463 Human PML-2 “mRNA,” complete CDS — “Also Represents: HG560-HT560, M82827” 70 210 I 4 1.6 209 I 4 1.58 180 I 3.6 1.24 X66401 LMP2 gene extracted from H. sapiens genes “TAP1,” “TAP2,” “LMP2,” LMP7 and DO 108 280 I 3.6 1.58 142 I 2.3 0.5 473 I 5.4 3.59 D50919 Human mRNA for KIAA0129 “gene,” complete cds 33 122 I 4.7 1.54 165 I 6 2.4 44 NC 0 0 L77701 Homo sapiens COX17 “mRNA,” complete cds 107 −90 D ˜5.3 1.53 −47 NC 0 0 −79 D 3.8 0.92 M87434 Human 71 kDa 2′5′ oligoadenylate synthetase (p69 2-5A synthetase) “mRNA,” comp 10 * 94 I ˜5.2 1.51 171 I ˜9.1 3.65 14 NC 0 0 Z35491 H. sapiens mRNA for novel glucocorticoid receptor-associated protein −2 * 101 I ˜5.0 1.48 136 I ˜6.7 2.43 88 I ˜4.3 1.14 X74262 H. sapiens RbAp48 mRNA encoding retinoblastoma binding protein 24 * 95 I 5 1.44 151 I 7.3 2.79 76 I 4.2 1.02 M63838 Human interferon-gamma induced protein (IFI 16) “gene,” complete cds — Also Repre 8 * 91 I ˜4.9 1.38 246 I ˜12.7 5.7 59 I ˜3.3 0.64 M92642 Homo sapiens alpha-1 type XVI collagen (COL16A1) “mRNA,” complete cds 43 * 136 I 4.2 1.37 110 NC 0 0 147 I 4.4 1.54 J04611 Human lupus p70 (Ku) autoantigen protein “mRNA,” complete cds 524 726 I 2.4 1.21 729 I 2.4 1.22 501 I 2 0.64 X82200 H. sapiens Staf50 mRNA 46 131 MI 3.9 1.2 228 I 6 2.79 9 NC 0 0 G2915-HT305 Major Histocompatibility “Complex,” Class “I,” E (Gb:M20022) 151 294 I 3 1.17 385 I 3.6 1.82 761 I 6.1 5.2 K03460 Human alpha-tubulin isotype H2-alpha “gene,” last exon 77 177 I 3.3 1.09 117 NC 0 0 150 NC 0 0 AB000464 Human “mRNA,” clone “RES4-24A,” exon “1,” “2,” “3,” 4 89 * −72 MD ˜4.5 1.08 −26 NC 0 0 −29 NC 0 0 Z84483 Human DNA sequence from PAC “46H23,” BRCA2 gene region chromosome 13q12 80 * −79 MD ˜4.0 0.98 −77 D ˜4.0 0.97 25 NC 0 0 M55542 Human guanylate binding protein isoform I (GBP-2) “mRNA,” complete cds 12 * 70 I ˜4.1 0.96 163 I ˜8.7 3.44 135 I ˜7.3 2.65 U59321 Human DEAD-box protein p72 (P72) “mRNA,” complete cds −37 * 107 I ˜3.5 0.92 69 I ˜1.6 0.13 5 NC 0 0 IG658-HT658 Major Histocompatibility “Complex,” Class “I,” C (Gb:X58536) — “Also Similar To: L42 120 217 I 2.8 0.91 243 I 3 1.1 156 I 2.3 0.52 L05072 Homo sapiens interferon regulatory factor 1 “gene,” complete cds — Also Represents: 22 * 66 I 4 0.89 95 I 5.3 1.57 660 I 31.1 15.38 D89052 Human mRNA for proton-ATPase-like “protein,” complete cds 408 504 I 2.2 0.88 312 I 1.8 0.38 598 I 2.5 1.18 D85815 Human DNA for “rhoHP1,” complete cds 81 * −62 MD ˜4.0 0.87 −9 NC 0 0 −28 NC 0 0 D28137 Human mRNA for “BST-2,” complete cds 22 * 64 I 3.9 0.84 78 I 4.5 1.15 10 I 1.4 0.04 D63160 Human DNA for lectin P35 78 * −65 D ˜3.9 0.84 −27 NC 0 0 −41 NC 0 0 M79462 Human PML-1 “mRNA,” complete CDS 35 * 86 MI 3.5 0.83 100 NC 0 0 90 I 3.6 0.88 U79294 Human clone 23748 “mRNA,” complete cds. 366 −226 D 2.6 0.82 −292 D 5 2.54 −201 NC 0 0 L40387 Homo sapiens thyroid receptor interactor (TRIP14) “gene,” 3′ end of cds. /gb = L40387 117 * 201 I 2.7 0.82 299 I 3.5 1.6 −8 NC 0 0 D84557 Human mRNA for “HsMcm6,” complete cds 166 −113 D 3.1 0.79 68 NC 0 0 −37 NC 0 0 D86971 Human mRNA for KIAA0217 “gene,” partial cds 74 −60 MD ˜3.7 0.76 −11 NC 0 0 −20 MD 1.4 0.04 M22877 Human somatic cytochrome c (HCS) “gene,” complete cds 93 159 I 2.7 0.73 239 I 3.6 1.44 70 MI 1.7 0.17 M16424 Human beta-hexosaminidase alpha chain (HEXA) gene 67 * −73 MD ˜3.3 0.71 −12 NC 0 0 −1 NC 0 0 X90846 H. sapiens mRNA for mixed lineage kinase 2 — Also Represents: Z48615 17 * 54 I ˜3.6 0.68 79 MI ˜4.8 1.24 79 MI ˜4.8 1.24 X75755 H. sapiens PR264 gene — Also Represents: HG3088-HT3261 Same Unigene Cluster 150 214 I 2.4 0.68 192 I 2.3 0.57 176 I 2.2 0.49 X04602 Human mRNA for interleukin BSF-2 (B-cell differentiation factor) — “Also Represents: 21 * 55 I 3.6 0.68 44 I 3.1 0.48 43 I 3 0.46 U04285 Human lysosomal acid “lipase,” cholesteryl ester hydrolase (LIPA) gene — “Also Repr 17 * 52 I ˜3.5 0.63 64 I ˜4.0 0.89 14 NC 0 0 U09825 Human acid finger protein “mRNA,” complete cds 76 * 124 I 2.6 0.61 138 I 2.8 0.73 77 I 2 0.27 M24470 Human glucose-6-phosphate “dehydrogenase,” complete cds 18 * 50 MI ˜3.4 0.61 53 NC 0 0 27 NC 0 0 U89606 Human pyridoxal kinase “mRNA,” complete cds. 28 * 61 MI 3.2 0.6 140 I 6 2.19 65 NC 0 0 U07000 BCR gene (unknown) extracted from Human breakpoint cluster region (BCR) “gene,” 77 −53 MD 3.2 0.58 −47 NC 0 0 −56 D 3.7 0.71 U83463 Human scafiold protein Pbp1 “mRNA,” complete cds. 13 * 52 I ˜3.2 0.56 52 NC 0 0 25 I ˜1.9 0.12 U88964 Human HEM45 “mRNA,” complete cds. 276 287 I 2 0.54 180 I 1.7 0.24 29 NC 0 0 M16707 Human histone H4 “gene,” complete “cds,” clone FO108 — Also Represents: X00038 62 −53 D ˜3.1 0.53 −61 D ˜3.1 0.56 −78 D ˜3.1 0.64 J04080 Human complement component Cir “mRNA,” complete cds 11 * 51 I ˜3.1 0.52 55 I ˜3.3 0.59 93 I ˜5.2 1.5 Z97054 DNA binding protein from Human DNA sequence from PAC 339A18 on chromosome 145 −90 MD 2.6 0.52 −24 NC 0 0 −21 NC 0 0 U41515 Human deleted in split hand/split foot 1 (DSS1) “mRNA,” complete cds 67 102 I 2.5 0.51 134 I 3 0.81 50 I 1.8 0.15 U15641 Human transcription factor E2F-4 “mRNA,” complete cds — Also Represents: S75174 141 −87 D 2.6 0.51 −39 NC 0 0 2 NC 0 0 U65785 Human 150 kDa oxygen-regulated protein ORP150 “mRNA,” complete cds 776 −365 D 1.9 0.5 −292 D 1.6 0.28 −354 D 1.8 0.46 M31520 Human ribosomal protein S24 mRNA — Also Represents: HG3214-HT3391 1583 948 I 1.6 0.5 562 I 1.4 0.21 91 NC 0 0 G3342-HT351 Id1 — Also Represents: S78825 851 609 I 1.7 0.49 433 I 1.5 0.27 153 NC 0 0 X61123 Human BTG1 mRNA 80 112 I 2.4 0.49 78 I 2 0.26 103 I 2.3 0.42 J00105 Human beta-2 microglobulin gene “mRNA,” 3′ end — Also Represents: V00567 1019 681 I 1.7 0.48 1131 I 2.1 1.15 277 I 1.3 0.11 X57351 Human 1-8D gene from interferon-inducible gene family — Also Represents: HG1538- 264 261 I 2 0.48 311 I 2.2 0.65 68 NC 0 0 U93205 Human nuclear chloride ion channel protein (NCC27) “mRNA,” complete cds 2328 1224 I 1.5 0.48 1071 I 1.5 0.38 24 NC 0 0 U90426 Human nuclear RNA “helicase,” complete cds 708 528 I 1.7 0.48 325 MI 1.5 0.21 449 I 1.6 0.37 G4063-HT433 Transcription Factor Hbf-2 — Also Represents: X74142 59 * −50 MD ˜3.0 0.48 −18 NC 0 0 −29 NC 0 0 U10439 Human double-stranded RNA adenosine deaminase “mRNA,” complete cds 152 172 I 2.1 0.46 298 I 3 1.18 153 I 2 0.37 L26247 Homo sapiens sul1iso1 “mRNA,” complete cds 1468 853 I 1.6 0.45 406 I 1.3 0.13 483 I 1.3 0.17 1001 645 I 1.6 0.45 269 I 1.3 0.1 10 NC 0 0 80 * −52 MD 2.8 0.45 −58 NC 0 0 −36 NC 0 0 U32849 Human Hou “mRNA,” complete cds 18 * 42 I ˜3.0 0.44 74 I ˜4.6 1.14 31 MI ˜2.4 0.26 G4322-HT459 “Tubulin,” Beta 306 275 I 1.9 0.44 231 I 1.8 0.32 253 I 1.8 0.38 1744 946 I 1.6 0.44 391 I 1.2 0.1 206 NC 0 0 124 * 145 MI 2.2 0.44 −10 NC 0 0 88 NC 0 0 Z54367 H. sapiens gene for plectin — Also Represents: U53204 195 −110 D 2.3 0.44 −38 NC 0 0 −46 NC 0 0 D38048 Human mRNA for proteasome subunit “z,” complete cds 764 524 I 1.7 0.43 415 I 1.5 0.29 206 I 1.3 0.09 Z12962 H. sapiens mRNA for homologue to yeast ribosomal protein L41 14040 −3328 D 1.3 0.43 −2342 MD 1.2 0.22 −2409 NC 0 0 X95404 H. sapiens mRNA for non-muscle type cofilin 6834 −1921 D 1.4 0.43 −1444 NC 0 0 −1117 NC 0 0 D28915 Human gene for hepatitis C-associated microtubular aggregate protein p44 27 * 48 MI 2.8 0.42 102 I 4.8 1.44 0 NC 0 0 M60858 Human nucleolin “gene,” complete cds 740 −332 D 1.8 0.42 365 I 1.5 0.24 −281 D 1.6 0.28 D10704 Human mRNA for choline kinase 80 −51 D 2.7 0.42 −25 NC 0 0 −41 NC 0 0 X02751 Human N-ras mRNA and flanking regions 2 * 52 I ˜2.7 0.41 47 I ˜2.4 0.31 16 NC 0 0 L07633 Homo sapiens (clone 1950.2) interferon-gamma IEF SSP 5111 “mRNA,” complete cd 250 228 I 1.9 0.41 161 I 1.6 0.22 464 I 2.9 1.38 U29680 Human A1 protein “mRNA,” complete cds 26 * 46 I 2.8 0.41 22 NC 0 0 23 NC 0 0 8662 −2225 D 1.3 0.4 −2314 D 1.4 0.43 −1605 D 1.2 0.21 M64174 Human protein-tyrosine kinase (JAK1) “mRNA,” complete cds 54 −48 D ˜2.7 0.4 11 NC 0 0 −34 NC 0 0 V00563 Human gene for immunoglobulin mu, part of exon 8. 123 −73 D 2.4 0.4 −57 NC 0 0 −35 NC 0 0 U07550 Human chaperonin 10 “mRNA,” complete cds 271 236 I 1.9 0.39 30 NC 0 0 166 I 1.6 0.21 D63486 Human mRNA for KIAA0152 “gene,” complete cds 221 −118 D 2.1 0.39 3 NC 0 0 −61 NC 0 0 M94362 Human lamin.B2 (LAMB2) “mRNA,” partial cds 574 −261 D 1.8 0.39 199 NC 0 0 −14 NC 0 0 Z25521 H. sapiens integrin associated protein mRNA, complete CDS, — Also Represents: X69 99 112 I 2.1 0.37 138 I 2.4 0.53 75 I 1.8 0.18 Z29066 H. sapiens nek2 mRNA for protein kinase — Also Represents: U11050 26 * 43 I 2.7 0.37 46 I 2.8 0.41 22 NC 0 0 U60062 Human FEZ1-T “mRNA,” alternatively spliced “form,” complete cds 60 −38 D 2.8 0.37 −30 NC 0 0 −42 MD ˜3.0 0.45 M34516 Human omega light chain protein 14.1 (lg lambda chain related) gene 14 * 41 MI ˜2.7 0.37 8 NC 0 0 19 NC 0 0 U82987 Human Bcl-2 binding component 3 (bbc3) “mRNA,” partial cds −27 * 74 I ˜2.3 0.36 35 NC 0 0 130 I ˜5.1 1.74 Z14244 H. sapiens cox VIIb mRNA for cytochrome c oxidase subunit VIIb 441 320 I 1.7 0.36 180 NC 0 0 195 I 1.4 0.16 D38521 Human mRNA for KIAA0077 “gene,” partial cds 80 −49 D 2.6 0.36 29 NC 0 0 −33 NC 0 0 G3859-HT412 Mage-4a Antigen 53 −45 D ˜2.6 0.36 −47 NC 0 0 −29 NC 0 0 U63090 Human Gal “beta-1,3” GalNAc “alpha-2,3” sialyltransferase (ST3Gal II) “mRNA,” com 12 * 41 MI ˜2.7 0.36 −10 NC 0 0 11 NC 0 0 J02923 Human 65-kilodalton phosphoprotein (p65) “mRNA,” complete cds 102 109 MI 2.1 0.34 195 I 2.9 0.92 70 I 1.7 0.16 G2917-HT306 Major Histocompatibility “Complex,” Class “I,” E (Gb:M21533) 239 198 I 1.8 0.34 278 I 2.2 0.6 700 I 3.9 2.87 U67122 Human ublquitin-related protein SUMO-1 “mRNA,” complete cds. — “Also Represents 107 113 I 2.1 0.34 151 I 2.4 0.56 19 NC 0 0 G1400-HT140 Carboxyl “Methyltransferase,” “Aspartate,” Alt. Splice 1 — Also Represents: D13892 100 108 I 2.1 0.34 80 I 1.8 0.2 39 I 1.4 0.06 G2815-HT293 “Myosin,” Light “Chain,” “Alkali,” Smooth Muscle “(Gb:U02629),” “Non-Muscle,” 2243 974 I 1.4 0.34 415 I 1.2 0.08 370 NC 0 0 Alt. S 8595 −2055 D 1.3 0.34 −1055 NC 0 0 −1952 D 1.3 0.31 D87071 Human mRNA for KIAA0233 “gene,” complete cds 126 −71 D 2.3 0.34 19 NC 0 0 12 MI 1.1 0.01 M87860 Human S-lac lectin L-14-II (LGALS2) gene −10 * 59 MI ˜2.4 0.34 49 NC 0 0 −4 NC 0 0 X15949 Human mRNA for interferon regulatory factor-2 (IRF-2) 5 * 45 MI ˜2.5 0.33 72 I ˜3.9 0.89 36 NC 0 0 Z47087 H. sapiens mRNA for RNA polymerase II elongation factor-like protein 134 129 I 2 0.33 68 I 1.5 0.11 105 I 1.8 0.23 M58028 Human ublquitin-activating enzyme E1 (UBE1) “mRNA,” complete cds 626 −263 D 1.7 0.33 −180 NC 0 0 −208 D 1.5 0.18 S73591 brain-expressed HHCPA78 homolog “[human,” HL-60 acute promyelocytic leukemia 4 * 46 MI ˜2.5 0.33 29 NC 0 0 13 NC 0 0 M94556 Human mitochondrial specific single stranded DNA binding protein “mRNA,” complete 309 233 I 1.8 0.32 310 I 2 0.53 272 I 1.9 0.42 X02530 Human mRNA for gamma-interferon inducible early response gene (with homology to 54 −34 D 2.7 0.32 −47 D ˜2.7 0.38 −17 NC 0 0 Z26491 H. sapiens gene for catechol O-methyltransferase — Also Represents: M65213 381 268 I 1.7 0.32 178 I 1.5 0.16 239 I 1.6 0.26 U67319 Human Lice2 beta cysteine protease “mRNA,” complete cds. 31 * 46 MI 2.5 0.32 27 MI 1.9 0.13 38 NC 0 0 X01703 Human gene for alpha-tubulin (b alpha 1) 316 237 I 1.7 0.32 118 NC 0 0 263 I 1.8 0.39 X60489 Human mRNA for elongation factor-1-beta 2705 1065 I 1.4 0.32 −219 NC 0 0 645 I 1.2 0.14 U90546 Human butyrophilin (BTF4) “mRNA,” complete cds 40 −116 D ˜2.0 0.32 −25 NC 0 0 −26 NC 0 0 11471 −2433 D 1.3 0.31 −3146 D 1.4 0.52 −1252 NC 0 0 U62962 Human Int-6 “mRNA,” complete cds 237 −117 D 2 0.31 236 I 2 0.46 −79 MD 1.5 0.12 U32129 Human mRNA for HLA class-I (HLA-A26) heavy “chain,” complete cds (clone cMIY-1 252 196 I 1.8 0.31 208 I 1.8 0.34 266 I 2.1 0.52 X57351 Human 1-8D gene from interferon-inducible gene family — Also Represents: HG1538- 5002 1593 I 1.3 0.31 856 I 1.2 0.11 557 NC 0 0 U53204 Human plectin (PLEC1) “mRNA,” complete cds 460 −200 D 1.8 0.31 −125 D 1.4 0.1 −53 MD 1.1 0.02 M25753 Human cyclin B “mRNA,” 3′ end 345 247 I 1.7 0.31 122 NC 0 0 255 I 1.7 0.33 M22760 Homo sapiens nuclear-encoded mitochondrial cytochrome c oxidase Va subunit “mR 528 331 I 1.6 0.31 131 NC 0 0 292 I 1.6 0.25 U62136 Human putative enterocyte differentiation promoting factor “mRNA,” partial cds 63 −38 D 2.5 0.31 20 NC 0 0 −31 D 2 0.16 X07315 Human gene for PP15 (placental protein 15) 528 332 I 1.6 0.31 38 NC 0 0 145 MI 1.3 0.08 51 * 63 MI 2.2 0.31 30 NC 0 0 26 NC 0 0 L25851 Homo sapiens integrin alpha E “mRNA,” complete cds 33 46 MI 2.4 0.31 21 NC 0 0 38 NC 0 0 V00594 Human mRNA for metallothionein from cadmium-treated cells — Also Represents: J00 17001 −3191 D 1.2 0.3 −4549 D 1.4 0.6 −2617 NC 0 0 X89398 ung gene “(uracli-DNA-glycosylase,” UNG2) extracted from H. sapiens ung gene for u 105 104 I 2 0.3 8 NC 0 0 136 I 2.3 0.48 IG162-HT316 Tyrosine “Kinase,” Receptor “Axl,” Alt. Splice 2 240 185 MI 1.8 0.3 110 NC 0 0 210 I 1.9 0.37 U73824 Human p97 “mRNA,” complete cds 1652 −544 D 1.5 0.3 −490 NC 0 0 −524 D 1.5 0.27 48 59 MI 2.2 0.3 21 NC 0 0 8 NC 0 0 1261 601 I 1.5 0.3 261 NC 0 0 −164 NC 0 0 J03260 Human transducin alpha-subunit (GNAZ) “mRNA,” complete cds — Also Represents: −8 * 54 I ˜2.3 0.3 31 NC 0 0 36 NC 0 0 D45248 Human mRNA for proteasome activator hPA28 subunit “beta,” complete cds 418 269 I 1.6 0.29 254 I 1.6 0.26 339 I 1.8 0.43 M10942 Human metaliothlonein-ie gene (hMT-ie) 832 −314 D 1.6 0.29 −214 D 1.3 0.12 −141 NC 0 0 X83492 H. sapiens mRNA for Fas/Apo-1 (clone “pCRTM11-Fasdelta(4,7)).” /gb = X83492 /ntyp 6 * 43 I ˜2.4 0.29 45 NC 0 0 46 I ˜2.6 0.35 Y08614 H. sapiens mRNA for CRM1 protein 157 −80 MD 2.1 0.29 26 NC 0 0 −78 NC 0 0 L14778 Human calmodulin-dependent protein phosphatase catalytic subunit (PPP3CA) “mRN 7 * 40 I ˜2.4 0.28 69 I ˜3.8 0.84 19 I ˜1.3 0.03 M17885 Human acidic ribosomal phosphoprotein P0 “mRNA,” complete cds 8139 −1797 D 1.3 0.28 −2105 D 1.3 0.39 −739 NC 0 0 U66711 Human Ly-6-related protein-9804 “gene,” complete cds — Also Represents: U56145 274 197 I 1.7 0.28 230 I 1.8 0.37 132 NC 0 0 X71490 H. sapiens mRNA for vacuolar proton “ATPase,” subunit D 135 * 118 MI 1.9 0.28 88 NC 0 0 146 MI 2.1 0.4 10371 −2123 D 1.3 0.28 −38 NC 0 0 −2241 D 1.3 0.31 U90313 Human glutathione-S-transferase homolog “mRNA,” complete cds. 1571 676 I 1.4 0.28 −117 NC 0 0 559 I 1.4 0.21 L02426 Human 26S protease (S4) regulatory subunit “mRNA,” complete cds 310 210 I 1.7 0.27 430 I 2.4 0.93 144 NC 0 0 K01900 Human lymphocyte interferon alpha type 201 “mRNA,” complete cds 46 −43 D ˜2.3 0.27 −48 D ˜2.3 0.29 −28 D ˜2.3 0.22 L25081 Human GTPase (rhoC) “mRNA,” complete cds 432 264 I 1.6 0.27 221 I 1.5 0.2 480 I 2.1 0.75 Z22548 H. sapiens thiol-specific antioxidant protein mRNA 147 124 I 1.8 0.27 98 MI 1.7 0.18 135 I 1.9 0.32 M15958 Human gastrin “gene,” complete cds 41 * −69 MD ˜2.1 0.27 −37 NC 0 0 −56 D ˜2.1 0.24 D14689 Human mRNA for KIAA0023 “gene,” complete cds 96 −52 MD 2.2 0.27 −22 NC 0 0 −20 NC 0 0 D80000 Human mRNA for KIAA0178 “gene,” partial cds 49 −34 D ˜2.4 0.27 29 NC 0 0 2 NC 0 0 X74794 H. sapiens P1-Cdc21 mRNA 437 −183 D 1.7 0.27 −97 NC 0 0 −145 NC 0 0 10791 −2116 MD 1.2 0.26 −2350 MD 1.3 0.32 −1440 NC 0 0 L17128 Homo sapiens (clone H4/H16) gamma-glutamic carboxylase “mRNA,” complete cds 9 * 37 I ˜2.3 0.26 27 NC 0 0 39 I ˜2.4 0.29 D85131 Human mRNA for Myc-associated zinc-finger protein of human “islet,” complete cds 66 −38 D 2.3 0.26 −24 NC 0 0 13 NC 0 0 X54936 H. sapiens mRNA for placenta growth factor (PIGF) 118 104 MI 1.9 0.28 36 NC 0 0 8 NC 0 0 Z29064 H. sapiens AF-1p mRNA 23 * 32 I 2.4 0.25 66 I 3.9 0.85 19 I 1.8 0.11 M19267 Human tropomyosin “mRNA,” complete cds — Also Represents: X12369 Same Unige 680 347 I 1.5 0.25 366 I 1.5 0.27 143 NC 0 0 G1153-HT115 Nucleoside Diphosphate Kinase Nm23-H2s 1130 496 MI 1.4 0.25 470 MI 1.4 0.23 449 I 1.4 0.21 U96915 Homo sapiens sin3 associated polypeptide p18 (SAP18) “mRNA,” complete cds. 537 296 I 1.6 0.25 78 MI 1.1 0.03 −16 NC 0 0 D50405 Human mRNA for RPD3 “protein,” complete cds 223 160 I 1.7 0.25 139 NC 0 0 286 I 2.3 0.69 X05610 Human mRNA for type IV collagen alpha-2 chain 660 −244 D 1.6 0.25 −42 NC 0 0 −205 D 1.4 0.16 U23946 Human putative tumor suppressor (LUCA15) “mRNA,” complete cds 54 −32 MD 2.4 0.25 −5 NC 0 0 −13 NC 0 0 U76272 Human diadenosine triphosphate (Ap3A) hydrolase (FHIT) “gene,” 5′ of −10 * 53 I ˜2.1 0.25 −1 NC 0 0 23 NC 0 0 U54644 Human tub homolog “mRNA,” complete cds — Also Represents: U82467 148 −72 D 1.9 0.24 −66 MD 1.8 0.19 −51 NC 0 0 G3044-HT374 “Fibronectin,” Alt. Splice 1 — “Also Represents: HG3044-HT2527, X02761” 673 −245 D 1.6 0.24 193 I 1.3 0.09 −235 D 1.5 0.22 G2815-HT293 “Myosin,” Light “Chain,” “Alkali,” Smooth Muscle “(Gb:U02629),” “Non-Muscle,” Alt. S 1347 555 I 1.4 0.24 245 I 1.2 0.06 5 NC 0 0 U63824 Human transcription factor RTEF-1 (RTEF1) “mRNA,” complete cds 40 * 47 I 2.2 0.24 23 NC 0 0 122 I 4 1.23 X65463 H. sapiens mRNA for MHC class I promoter binding protein 65 64 MI 2 0.24 33 NC 0 0 91 MI 2.4 0.44 46 * −34 MD ˜2.3 0.24 −22 NC 0 0 −25 NC 0 0 L37042 Homo sapiens casein kinase I alpha isoform (CSNK1A1) “mRNA,” complete cds 102 −53 D 2.1 0.24 47 NC 0 0 −13 NC 0 0 M87284 Human 69 kDa 2′5′ oligoadenylate sythetase (P69 2-5A synthetase) “mRNA,” comp 52 * 56 I 2.1 0.24 86 NC 0 0 6 NC 0 0 X72727 H. sapiens tunp mRNA for transformation upregulated nuclear protein 523 274 I 1.5 0.23 277 I 1.5 0.23 101 NC 0 0 D00760 Human mRNA for proteasome subunit HC3 231 156 I 1.7 0.23 110 I 1.5 0.13 67 NC 0 0 J03909 Human gamma-interferon-inducible protein (IP-30) “mRNA,” complete cds 4 * 40 MI ˜2.2 0.23 31 MI ˜1.8 0.12 235 I ˜12.0 5.33 X79234 H. sapiens mRNA for ribosomal protein L11 5490 −1212 D 1.3 0.23 −1371 NC 0 0 −1487 D 1.4 0.35 M62810 Human mitochondrial transcription factor 1 “mRNA,” complete cds 46 50 MI 2.1 0.23 82 NC 0 0 −20 NC 0 0 X64707 H. sapiens BBC1 mRNA 3338 1023 MI 1.3 0.23 549 NC 0 0 860 NC 0 0 G1980-HT202 “Tubulin,” Beta 2 6620 −1350 D 1.3 0.22 −1817 D 1.4 0.4 −461 NC 0 0 X98172 H. sapiens mRNA for MACH-alpha-1 protein 23 * 30 MI 2.3 0.22 42 I 2.8 0.39 51 I 3.2 0.55 U86782 Human 26S proteasome-associated pad1 homolog (POH1) “mRNA,” complete cds. / 293 181 I 1.6 0.22 228 I 1.8 0.33 9 NC 0 0 M84349 Human transmembrane protein (CD59) gene 401 220 I 1.5 0.22 217 I 1.5 0.21 185 I 1.5 0.16 X71874 proteasome-like subunit MECL-1 gene extracted from H. sapiens genes for proteason 184 128 I 1.7 0.22 108 I 1.6 0.16 379 I 3.1 1.41 D00763 Human mRNA for proteasome subunit HC9 268 170 I 1.6 0.22 95 MI 1.4 0.08 13 NC 0 0 U09564 Human serine kinase “mRNA,” complete cds 87 −45 D 2.1 0.22 −10 NC 0 0 −48 D 2.3 0.28 M11353 Human H3.3 histone class C “mRNA,” complete cds 914 397 I 1.4 0.22 39 NC 0 0 17 NC 0 0 M17886 Human acidic ribosomal phosphoprotein P1 “mRNA,” complete cds 7275 −1429 MD 1.2 0.21 −1968 D 1.4 0.4 −979 NC 0 0 U47634 Human beta-tubulin class III isotype (beta-3) “mRNA,” complete cds 348 197 I 1.6 0.21 210 MI 1.6 0.24 290 I 1.8 0.41 AB000584 Human mRNA for TGF-beta superfamily “protein,” complete cds 1134 445 I 1.4 0.21 406 I 1.4 0.18 222 I 1.2 0.07 X13794 H. sapiens lactate dehydrogenase B gene exon 1 and 2 (EC 1.1.1.27) (and joined CD 1551 −448 D 1.4 0.21 −211 NC 0 0 −699 D 1.8 0.62 M63180 Human threonyl-tRNA synthetase “mRNA,” complete cds 218 −95 D 1.8 0.21 119 NC 0 0 −90 D 1.7 0.18 87 73 I 1.8 0.21 53 NC 0 0 29 NC 0 0 D12686 Human mRNA for eukaryotic initiation factor 4 gamma (elF-4 gamma) 426 −162 D 1.6 0.21 −3 NC 0 0 −70 NC 0 0 D31762 Human mRNA for KIAA0057 “gene,” complete cds 148 −69 D 1.9 0.21 52 NC 0 0 −24 NC 0 0 G4334-HT460 Glycogenin — Also Represents: U31525 270 164 I 1.6 0.21 116 NC 0 0 53 NC 0 0 U00802 Human drebrin E2 mRNA “(DBN1),” complete cds — Also Represents: D17530 83 −42 D 2 0.21 −15 NC 0 0 −4 NC 0 0 U05681 Human proto-oncogene BCL3 gene — Also Represents: M31732 169 −77 D 1.8 0.21 −61 NC 0 0 7 NC 0 0 U46571 Human tetratricopeptide repeat protein (tpr2) “mRNA,” complete cds 82 −42 D 2.1 0.21 −7 NC 0 0 −43 NC 0 0 X14329 Human mRNA for carboxypeptidase N small subunit (EC 3.4.17.3) 79 * −41 MD 2.1 0.21 −66 NC 0 0 −29 NC 0 0 X89894 H. sapiens mRNA for nuclear receptor 18 * 28 I ˜2.3 0.21 4 NC 0 0 37 NC 0 0 M19311 Human calmodulin “mRNA,” complete cds — Also Represents: D45887 2009 661 I 1.3 0.2 640 I 1.3 0.19 −200 NC 0 0 U37689 Human RNA polymerase II subunit (hsRPB8) “mRNA,” complete cds 573 269 I 1.5 0.2 223 I 1.4 0.14 400 I 1.7 0.39 D38583 Human mRNA for “calgizzarin,” complete cds 802 348 I 1.4 0.2 199 I 1.2 0.08 424 I 1.5 0.29 M34539 Human FK506-binding protein (FKBP) “mRNA,” complete cds 1008 −310 D 1.4 0.2 −134 D 1.2 0.04 −306 D 1.4 0.19 M14091 Human thyroxine-binding globulin “mRNA,” complete cds 43 −30 D ˜2.2 0.2 −10 NC 0 0 −58 D ˜2.2 0.27 X68277 H. sapiens CL 100 mRNA for protein tyrosine phosphatase 155 109 I 1.7 0.2 38 NC 0 0 92 I 1.6 0.15 J04029 Homo sapiens keratin 10 type I intermediate filament (KRT 10) “mRNA,” complete cds 401 210 I 1.5 0.2 59 NC 0 0 93 NC 0 0 L32977 Homo sapiens (clone I17252) ubiquinol cytochrome c reductase Rieske iron-sulphur 460 229 I 1.5 0.2 78 NC 0 0 50 NC 0 0 U57341 Human neurofilament triplet L protein “mRNA,” partial cds. /gb = U57341 /ntype = RNA 695 −229 D 1.5 0.19 −265 D 1.6 0.27 −124 NC 0 0 J04168 Human leukoslatin “mRNA,” complete cds 44 −25 D ˜2.2 0.19 −33 D ˜2.2 0.22 −20 D 1.8 0.11 D87465 Human mRNA for KIAA0275 “gene,” complete cds 43 −31 MD ˜2.1 0.19 −29 D ˜2.1 0.19 −30 NC 0 0 U49441 Human mitochondrial trifunctional protein beta subunit “mRNA,” partial cds. /gb = U49 54 * −29 MD 2.2 0.19 −27 D 2 0.15 −3 NC 0 0 U17760 Human laminin S B3 chain (LAMB3) gene 541 −189 D 1.5 0.19 −80 D 1.2 0.03 −113 NC 0 0 X76717 H. sapiens MT-11 mRNA 425 210 I 1.5 0.19 −208 NC 0 0 331 I 1.8 0.4 M20778 Homo “sapien,” alpha-3 (VI) collagen — Also Represents: X52022 51 −28 D 2.2 0.19 −15 NC 0 0 −38 D ˜2.6 0.32 M20902 Human apolipoprotein C-I (VLDL) “gene,” complete cds 65 −33 D 2.1 0.19 −29 NC 0 0 −18 D 1.4 0.04 430 214 I 1.5 0.19 104 NC 0 0 67 NC 0 0 M22538 Human nuclear-encoded mitochondrial NADH-ublquinone reductase 24Kd subunit “m 591 268 I 1.5 0.19 122 NC 0 0 67 NC 0 0 X69111 H. sapiens HLH 1R21 mRNA for helix-loop-helix protein 1185 432 I 1.4 0.19 45 NC 0 0 −1 NC 0 0 X63563 H. sapiens mRNA for RNA polymerase II 140 kDa subunit 56 49 I 1.9 0.18 174 I 4.1 1.51 32 NC 0 0 U84573 Homo sapiens lysyl hydroxylase isoform 2 (PLOD2) “mRNA,” complete cds 58 −30 MD 2.1 0.18 103 I 2.8 0.61 −35 D 2.5 0.29 M23114 Homo sapiens calcium-ATPase (HK1) “mRNA,” complete cds 205 125 MI 1.6 0.18 194 I 1.9 0.39 119 I 1.6 0.17 U07806 Human camptothecin resistant clone CEM/C2 DNA topoisomerase I “mRNA,” partial 89 −43 D 1.9 0.18 103 I 2.2 0.36 −38 D 1.7 0.13 X55954 Human mRNA for HL23 ribosomal protein homologue 5404 −1034 D 1.2 0.18 −1065 MD 1.2 0.19 −1330 D 1.3 0.29 Z25749 H. sapiens gene for ribosomal protein S7 3451 878 I 1.3 0.18 636 I 1.2 0.1 −24 NC 0 0 M73780 Human integrin beta-8 subunit “mRNA,” complete cds 40 −38 D ˜2.0 0.18 0 NC 0 0 −24 D ˜2.0 0.14 X51956 Human ENO2 gene for neuron specific (gamma) enolase 65 * 54 I 1.8 0.18 2 NC 0 0 33 MI 1.5 0.07 M16937 Human homeo box c1 “protein,” “mRNA,” complete cds 29 * 31 MI 2.1 0.18 19 NC 0 0 12 NC 0 0 M27318 Human interferon (IFN-alpha-M1) “mRNA,” complete cds 69 * −35 D 2 0.18 −37 NC 0 0 −25 NC 0 0 M60854 Human ribosomal protein S16 “mRNA,” complete cds 9238 −1571 MD 1.2 0.18 −1818 NC 0 0 −1395 NC 0 0 U01120 Human glucose-6-phosphatase “mRNA,” complete cds 43 * −26 D ˜2.1 0.18 −16 NC 0 0 −16 NC 0 0 U04209 Human associated microfibrillar protein “mRNA,” complete cds 16 * 26 I ˜2.1 0.18 41 NC 0 0 20 NC 0 0 U04241 Human homolog of Drosophila enhancer of split m9/m10 “mRNA,” complete cds 496 −173 D 1.5 0.18 −129 NC 0 0 −74 NC 0 0 U07132 Human steroid hormone receptor Ner-I “mRNA,” complete cds 183 −77 MD 1.7 0.18 −38 NC 0 0 −12 NC 0 0 U59423 Human Smad1 “mRNA,” complete cds. 66 −33 D 2 0.18 −19 NC 0 0 −11 NC 0 0 V00599 Human mRNA fragment encoding beta-tubulin. (from clone D-beta-1) — Also Represe 5508 −1071 D 1.2 0.18 −669 NC 0 0 −612 NC 0 0 U61397 Human ublquitin-homology domain protein PIC1 “mRNA,” complete cds — Also Repre 119 82 I 1.7 0.17 101 I 1.8 0.25 −14 NC 0 0 D26599 Human mRNA for proteasome subunit “HsC7-1,” complete cds 807 319 I 1.4 0.17 329 I 1.4 0.18 446 I 1.6 0.31 G1071-HT107 Bone Morphogenetic Protein 3 39 −35 D ˜2.0 0.17 −34 D ˜2.0 0.16 −23 MD ˜2.0 0.13 U62966 Human Na+/nucleoskie cotransporter (hCNT1a) “mRNA,” complete cds 93 * −43 MD 1.9 0.17 −26 MD 1.4 0.05 −36 NC 0 0 U68566 Human HS1 binding protein HAX-1 “mRNA,” nuclear gene encoding mitochondrial “p 814 311 I 1.4 0.17 −159 NC 0 0 182 I 1.2 0.07 U11791 Human cyclin H “mRNA,” complete cds 60 50 MI 1.8 0.17 22 NC 0 0 20 MI 1.3 0.04 69 −34 D 2 0.17 25 NC 0 0 −13 NC 0 0 M59465 Human tumor necrosis factor alpha inducible protein A20 “mRNA,” complete cds 41 * −30 MD ˜2.0 0.17 15 NC 0 0 −23 NC 0 0 U11861 Human G10 homolog (edg-2) “mRNA,” complete cds 619 264 I 1.4 0.17 189 NC 0 0 255 NC 0 0 U94586 Human NADH:ublquinone oxidoreductase MLRQ subunit “mRNA,” complete cds. 1441 471 I 1.3 0.17 −527 NC 0 0 −145 NC 0 0 M22382 Human mitochondrial matrix protein P1 (nuclear encoded) “mRNA,” complete cds 880 326 I 1.4 0.16 966 I 2.1 1.05 67 NC 0 0 L48513 Homo sapiens paraoxonase 2 (PON2) “mRNA,” complete cds 37 34 I 1.9 0.16 44 I 2.2 0.25 4 NC 0 0 D63475 Human mRNA for KIAA0109 “gene,” complete cds 2343 634 I 1.3 0.16 215 I 1.1 0.03 −1 NC 0 0 U09813 Human mitochondrial ATP synthase subunit “9,” P3 gene “copy,” “mRNA,” nuclear g 1679 502 I 1.3 0.16 276 NC 0 0 578 I 1.3 0.2 D87075 Human mRNA for KIAA0238 “gene,” partial cds 39 −32 D ˜1.9 0.16 0 NC 0 0 −9 NC 0 0 L12723 Human heat shock protein 70 (hsp70) “mRNA,” complete cds 105 −48 MD 1.8 0.16 101 NC 0 0 −20 NC 0 0 L32137 Human germline oligomeric matrix protein (COMP) “mRNA,” complete cds 37 * −46 D ˜1.8 0.16 −40 NC 0 0 −32 NC 0 0 M32886 Human sorcin CP-22 “mRNA,” complete cds 392 182 I 1.5 0.16 −60 NC 0 0 47 NC 0 0 U57650 Human SH2-containing inositol 5-phosphatase (hSHIP) “mRNA,” complete cds 39 −30 MD ˜2.0 0.16 17 NC 0 0 −13 NC 0 0 Y09392 H. sapiens mRNA for “WSL-LH,” WSL-S1 and WSL-S2 proteins — Also Represents: U 41 −27 D ˜2.0 0.16 1 NC 0 0 −25 NC 0 0 X71428 H. sapiens fus mRNA 738 274 I 1.4 0.15 476 I 1.6 0.38 226 I 1.3 0.11 V00572 Human mRNA encoding phosphoglycerate kinase 3020 724 I 1.2 0.15 −840 D 1.4 0.28 301 NC 0 0 X03689 Human mRNA fragment for elongation factor TU (N-terminus). /gb = X03689 /ntype = R 4846 1000 I 1.2 0.15 665 I 1.1 0.08 202 I 1 0.01 G4073-HT434 Cytosolic Acetoacetyl-Coenzyme A Thiolase 196 107 I 1.5 0.15 38 I 1.2 0.03 60 I 1.3 0.06 U19147 Human GAGE-6 protein “mRNA,” complete cds — “Also Represents: U19145, U19148 500 206 I 1.4 0.15 98 NC 0 0 198 I 1.4 0.14 Z49099 H. sapiens mRNA for spermine synthase 1160 −299 MD 1.3 0.15 60 NC 0 0 −244 D 1.3 0.1 D26362 Human mRNA KIAA0043 “gene,” complete cds 62 −30 D 2 0.15 −6 NC 0 0 −2 NC 0 0 M95178 Human non-muscle alpha-actinin “mRNA,” complete cds 432 −142 D 1.5 0.15 −53 NC 0 0 −77 NC 0 0 X79865 H. sapiens Mrp17 mRNA 885 −247 D 1.4 0.15 −151 NC 0 0 −72 NC 0 0 U54778 Human 14-3-3 epsilon “mRNA,” complete cds 317 145 I 1.5 0.14 254 I 1.8 0.36 155 I 1.5 0.16 M34079 Human immunodeficiency virus fat transactivator binding protein-1 (tbp-1) “mRNA,” c 962 −252 MD 1.4 0.14 −221 D 1.3 0.11 −294 D 1.4 0.19 J04973 Human cytochrome bc-1 complex core protein II “mRNA,” complete cds 139 82 MI 1.6 0.14 72 I 1.5 0.11 37 I 1.3 0.04 4 * 34 MI ˜1.9 0.14 27 I ˜1.5 0.07 11 NC 0 0 U91316 Human acyl-CoA thioester hydrolase “mRNA,” complete cds 572 217 I 1.4 0.14 31 NC 0 0 340 I 1.6 0.29 U14971 Human ribosomal protein S9 “mRNA,” complete cds 3866 831 I 1.2 0.14 −89 NC 0 0 955 I 1.2 0.18 M21142 guanine nucleotide-binding protein G-s-alpha-3 gene extracted from Human guanine 1344 −330 MD 1.3 0.14 −179 NC 0 0 −207 MD 1.2 0.06 X90840 H. sapiens mRNA for axonal transporter of synaptic vesicles 4 * 33 I ˜1.8 0.14 −5 NC 0 0 23 I ˜1.3 0.04 A28102 Human GABAa receptor alpha-3 subunit. — “Also Similar To: AF002255, L41347, AF0 52 −25 D 1.9 0.14 29 NC 0 0 −12 NC 0 0 G2238-HT232 Nuclear Mitotic Apparatus Protein “1,” Alt. Splice Form 2 — “Also Represents: HG2238 110 −46 MD 1.7 0.14 −7 NC 0 0 −24 NC 0 0 M12125 Human fibroblast muscle-type tropomyosin “mRNA,” complete cds 1087 −282 MD 1.4 0.14 −153 NC 0 0 −144 NC 0 0 M23892 Human 15-lipoxygenase “mRNA,” complete cds — Also Represents: U88317_rna1 23 * 23 I 2 0.14 5 NC 0 0 11 NC 0 0 U63541 Human mRNA expressed in HC/HCC livers and MolT-4 proliferating “cells,” partial se 61 * 45 MI 1.7 0.14 61 NC 0 0 51 NC 0 0 X59543 Human mRNA for M1 subunit of ribonucleotide reductase 200 104 I 1.5 0.14 58 NC 0 0 14 NC 0 0 Z22780 H. sapiens cylicin mRNA 37 −33 D ˜1.8 0.14 −27 NC 0 0 −20 NC 0 0 M63175 Human autocrine motility factor receptor mRNA 58 42 I 1.7 0.13 51 MI 1.9 0.18 30 MI 1.5 0.08 Z24727 H. sapiens tropomyosin isoform “mRNA,” complete CDS 1056 324 I 1.3 0.13 222 MI 1.2 0.07 179 I 1.2 0.05 U79254 Human clone 23693 mRNA sequence 631 −176 D 1.4 0.13 −4 NC 0 0 −323 D 2 0.57 D21852 Human mRNA for KIAA0029 “gene,” partial cds 84 −37 D 1.8 0.13 20 NC 0 0 −6 NC 0 0 D79989 Human mRNA for KIAA0167 “gene,” complete cds 36 * −31 MD ˜1.8 0.13 −13 NC 0 0 −20 NC 0 0 HG870-HT870 “Golgin,” 165 Kda Polypeptide 39 * −23 MD ˜1.9 0.13 −14 NC 0 0 −16 NC 0 0 J05032 Human aspartyl-tRNA synthetase alpha-2 subunit “mRNA,” complete cds 52 −25 MD 1.9 0.13 22 NC 0 0 −15 NC 0 0 M21904 Human 4F2 glycosylated heavy chain (4F2HC) antigen gene 409 162 I 1.4 0.13 20 NC 0 0 67 NC 0 0 Y07867 H. sapiens mRNA for “Pirin,” isolate 1 43 * 33 I 1.8 0.13 14 NC 0 0 29 NC 0 0 D14043 Human mRNA for “MGC-24,” complete cds 55 39 MI 1.7 0.12 127 I 3.3 0.92 −22 NC 0 0 U08021 Human nicotinamide N-methyltransferase (NNMT) “mRNA,” complete cds 742 239 I 1.3 0.12 −27 NC 0 0 1261 I 2.7 2.05 U51010 Human nicotinamide N-methyltransferase “gene,” exon 1 and 5′ flanking region. /gb = 401 156 I 1.4 0.12 62 NC 0 0 659 I 2.6 1.42 U09587 Human glycyl-tRNA synthetase mRNA, complete cds. 1573 −346 D 1.3 0.12 −109 NC 0 0 −387 D 1.3 0.15 Z47055 Human partial cDNA “sequence,” farnesyl pyrophosphate synthetase like-4. /gb = Z47 485 182 I 1.4 0.12 70 NC 0 0 207 I 1.4 0.15 M36430 Human transducin beta-1 subunit “mRNA,” 3′ end — Also Represents: X04526 469 −137 D 1.4 0.12 2 NC 0 0 −109 D 1.3 0.08 D50663 Human mRNA for TCTEL1 “gene,” complete cds 389 153 I 1.4 0.12 106 NC 0 0 18 NC 0 0 U01691 Human annexin V (ANX5) “gene,” 5′-untranslated region — “Also Represents: X12454 937 278 I 1.3 0.12 94 NC 0 0 39 NC 0 0 U76764 Human CD97 “mRNA,” complete cds — “Also Represents: X84700, X94630_ma1” 39 −20 MD ˜1.9 0.12 11 NC 0 0 −1 NC 0 0 X52979 SmB protein gene extracted from Human gene for small nuclear ribonucleoproteins S 1575 399 I 1.3 0.12 86 NC 0 0 228 NC 0 0 X56687 H. sapiens mRNA for autoantigen NOR-90 — “Also Represents: X53461, X53390, U65 34 * −42 MD ˜1.7 0.12 −20 NC 0 0 −32 NC 0 0 X62691 H. sapiens mRNA for ribosomal protein (homologuous to yeast S24) 4511 850 I 1.2 0.12 650 NC 0 0 226 NC 0 0 X12671 hnmp a1 protein gene extracted from Human gene for heterogeneous nuclear ribonu 880 260 I 1.3 0.11 627 I 1.7 0.5 −5 NC 0 0 X78136 H. sapiens hnRNP-E2 mRNA 1073 298 I 1.3 0.11 534 I 1.5 0.3 541 I 1.5 0.3 X86809 H. sapiens mRNA for major astrocytic phosphoprotein PEA-15 986 −235 D 1.3 0.11 −345 MD 1.5 0.26 −257 MD 1.4 0.14 U68105 Human poly(A)-binding protein (PABP) “gene,” promoter region and — Also Represen 996 278 I 1.3 0.11 351 I 1.4 0.16 256 I 1.3 0.1 X85373 H. sapiens mRNA for Sm protein G 613 202 I 1.3 0.11 156 MI 1.3 0.07 82 MI 1.1 0.03 U14969 Human ribosomal protein L28 “mRNA,” complete cds 5725 934 I 1.2 0.11 400 I 1.1 0.03 1680 I 1.3 0.29 L76568 S26 from Homo sapiens excision and cross link repair protein (ERCC4) “gene,” comp 398 149 I 1.4 0.11 45 I 1.1 0.02 101 NC 0 0 M64929 Human protein phosphatase 2A alpha subunit “mRNA,” complete cds 94 −38 MD 1.7 0.11 50 NC 0 0 −43 MD 1.8 0.16 X65867 H. sapiens mRNA for adenylosuccinate lyase 634 202 I 1.3 0.11 −127 NC 0 0 228 I 1.4 0.13 U47101 Human NitU-like protein (hNitU) “mRNA,” partial cds 112 61 I 1.5 0.11 8 NC 0 0 53 MI 1.5 0.09 720 227 I 1.3 0.11 −94 NC 0 0 16 NC 0 0 475 166 I 1.3 0.11 −14 NC 0 0 131 NC 0 0 D13640 Human mRNA for KIAA0015 “gene,” complete cds 261 −85 D 1.5 0.11 −103 NC 0 0 −64 NC 0 0 D14827 Human mRNA for Tax helper protein “1,” complete cds 32 * −50 MD ˜1.6 0.11 −23 NC 0 0 −28 NC 0 0 D31846 Human gene for aquaporin-2 water “channel,” “exon1-4,” complete cds 202 −70 MD 1.5 0.11 −58 NC 0 0 −79 NC 0 0 D86974 Human mRNA for KIAA0220 “gene,” partial cds 168 −58 MD 1.5 0.11 32 NC 0 0 −34 NC 0 0 L28010 Homo sapiens HnRNP F protein “mRNA,” complete cds 196 −67 D 1.5 0.11 76 NC 0 0 46 NC 0 0 L38951 Homo sapiens importin beta subunit “mRNA,” complete cds 177 −61 D 1.5 0.11 115 NC 0 0 −37 NC 0 0 M19989 Human platelet-derived growth factor (PDGFA) A chain gene 32 * 25 MI 1.8 0.11 18 NC 0 0 11 NC 0 0 M33336 Human cAMP-dependent protein kinase type I-alpha subunit (PRKAR1A) “mRNA,” c 93 −37 D 1.7 0.11 76 NC 0 0 −7 NC 0 0 U24166 Human EB1 “mRNA,” complete cds 230 101 MI 1.4 0.11 91 NC 0 0 50 NC 0 0 X93920 H. sapiens mRNA for protein-tyrosine-phosphatase (tissue type: foreskin) 30 * 24 I 1.8 0.11 −7 NC 0 0 36 NC 0 0 X95648 H. sapiens mRNA for elF-2B alpha subunit 90 48 I 1.5 0.1 78 I 1.9 0.22 106 MI 2.2 0.38 D79995 Human mRNA for KIAA0173 “gene,” complete cds 37 −18 D ˜1.9 0.1 −23 D ˜1.9 0.12 −12 NC 0 0 D78132 Human mRNA for Ras homologue enriched in brain (RHEB) “gene,” Ras-related GT 524 171 MI 1.3 0.1 168 I 1.3 0.1 7 NC 0 0 X99584 H. sapiens mRNA for SMT3A protein 100 * 54 I 1.5 0.1 45 I 1.5 0.08 95 I 2 0.28 M64595 Human small G protein (Gx) “mRNA,” 3′ end 200 −65 MD 1.5 0.1 −59 MD 1.4 0.08 −28 NC 0 0 U48959 Human myosin light chain kinase (MLCK) “mRNA,” complete cds 127 −46 D 1.6 0.1 −43 NC 0 0 −71 D 2.3 0.34 D32050 Human mRNA for alanyl-tRNA “synthetase,” complete cds 396 −109 D 1.4 0.1 −24 NC 0 0 −20 NC 0 0 D89077 Human mRNA for Src-like adapter “protein,” complete cds 33 * −36 D ˜1.6 0.1 −22 NC 0 0 −11 NC 0 0 U18291 Human CDC16Hs “mRNA,” complete cds 46 31 MI 1.7 0.1 26 NC 0 0 17 NC 0 0 U89942 Human lysyl oxidase-related protein (WS9-14) “mRNA,” complete cds 618 −153 D 1.3 0.1 26 NC 0 0 −118 NC 0 0 X72964 H. sapiens mRNA for caltractin 178 79 MI 1.4 0.1 4 NC 0 0 15 NC 0 0 X84709 H. sapiens mRNA for mediator of receptor-induced toxicity 295 115 I 1.4 0.1 −48 NC 0 0 87 NC 0 0 Z24724 H. sapiens polyA site DNA 33 −27 D ˜1.7 0.09 80 I 3.4 0.77 −17 NC 0 0 U20998 Homo sapiens signal recognition particle subunit 9 (SRP9) “mRNA,” complete cds 105 52 I 1.5 0.09 172 I 2.6 0.72 32 I 1.3 0.04 X61615 H. sapiens mRNA for leukemia inhibitory factor (LIF) receptor 80 −30 D 1.6 0.09 −51 D 2.7 0.42 −24 NC 0 0 M29277 Human isolate JuSo MUC18 glycoprotein mRNA (3′ “variant),” complete cds — “Also R 320 −91 MD 1.4 0.09 −160 MD 2 0.38 −75 NC 0 0 U07919 Human aldehyde dehydrogenase 6 “mRNA,” complete cds 8 * 25 I ˜1.6 0.09 42 I ˜2.5 0.31 6 NC 0 0 J05448 Human RNA polymerase subunit hRPB “33,” mRNA 115 55 MI 1.5 0.09 57 NC 0 0 116 I 2 0.32 D14811 Human mRNA for KIAA0110 “gene,” complete cds 99 −35 MD 1.5 0.09 −26 NC 0 0 −50 MD 2 0.21 U14972 Human ribosomal protein S10 “mRNA,” complete cds 3771 617 I 1.2 0.09 −171 NC 0 0 964 I 1.3 0.18 M20471 Human brain-type clathrin light-chain a “mRNA,” complete cds 793 205 MI 1.3 0.09 91 NC 0 0 314 MI 1.4 0.17 X90392 H. sapiens mRNA for DNase X gene 94 −34 D 1.6 0.09 −4 NC 0 0 −37 D 1.6 0.11 X91788 H. sapiens mRNA for lcin protein 279 100 I 1.4 0.09 0 NC 0 0 83 I 1.3 0.06 X79200 H. sapiens mRNA for “SYT-SSX,” synovial sarcoma translocation junction. /gb = X7920 423 −107 MD 1.3 0.09 −54 NC 0 0 −80 D 1.2 0.05 AC002115 F25451_2 gene extracted from Human DNA from overlapping chromosome 19 cosm 1130 276 I 1.2 0.09 75 NC 0 0 38 NC 0 0 5 * 28 MI ˜1.6 0.09 7 NC 0 0 18 NC 0 0 D13146 2′,3′-cyclic-nucleotide 3′-phosphodiesterase gene extracted from Human “2′,3′-cyclic- 510 158 I 1.3 0.09 67 NC 0 0 55 NC 0 0 G1728-HT173 Non-Specific Cross Reacting Antigen “(Gb:D90277),” Alt. Splice Form 2 — “Also Repre 263 −77 D 1.4 0.09 −49 NC 0 0 1 NC 0 0 HG846-HT846 Cyclophilin-Related Protein 34 * −22 D ˜1.7 0.09 −19 NC 0 0 −19 NC 0 0 L31801 Homo sapiens monocarboxylate transporter 1 (SLC16A1) “mRNA,” complete cds 86 −32 D 1.6 0.09 19 NC 0 0 −6 NC 0 0 M13450 Human esterase D “mRNA,” 3′end 115 54 I 1.5 0.09 34 NC 0 0 8 NC 0 0 M35198 Human integrin B-6 “mRNA,” complete cds −4 * 36 I ˜1.6 0.09 20 I ˜1.0 0 2 NC 0 0 M97388 Human TATA binding protein-associated phosphoprotein (DR1) “mRNA,” complete c 84 −31 MD 1.6 0.09 20 NC 0 0 −33 NC 0 0 X64269 H. sapiens gene MITF1 for mitochondrial transcription factor 1 99 * −35 MD 1.5 0.08 −110 D ˜4.9 1.54 −11 NC 0 0 U44378 Human homozygous deletion target in pancreatic carcinoma (DPC4) “mRNA,” compl 15 * 19 I ˜1.7 0.08 62 I ˜3.8 0.81 1 NC 0 0 U47077 Human DNA-dependent protein kinase catalytic subunit (DNA-PKcs) “mRNA,” compl 52 −21 D 1.7 0.08 71 I 2.4 0.37 1 NC 0 0 M23613 Human nucleophosmin “mRNA,” complete cds 1941 365 I 1.2 0.08 749 I 1.4 0.26 −542 NC 0 0 D12775 Human mRNA for erythrocyte-specific AMP “deaminase,” complete cds — Also Repre 21 * 15 MI 1.7 0.08 20 I 2 0.13 18 NC 0 0 D50840 Human mRNA for ceramide “glucosyltransferase,” complete cds 361 −94 D 1.4 0.08 111 MI 1.3 0.08 −109 NC 0 0 M16342 Human nuclear ribonucleoprotein particle (hnRNP) C protein “mRNA,” complete cds 788 194 I 1.2 0.08 170 I 1.2 0.06 −7 NC 0 0 U38846 Human stimulator of TAR RNA binding (SRB) “mRNA,” complete cds 1087 243 I 1.2 0.08 160 I 1.1 0.04 168 I 1.2 0.04 Y00264 Human mRNA for amyloid A4 precursor of Alzheimer's disease 189 70 I 1.4 0.08 43 I 1.2 0.03 60 I 1.3 0.06 D10511 Human gene for mitochondrial acetoacetyl-CoA thiolase 115 −38 D 1.5 0.08 20 NC 0 0 −62 D 2.1 0.28 X96381 H. sapiens erm “gene,” exon “2,3,4,5” (and joined CDS) 163 65 I 1.4 0.08 −2 NC 0 0 82 I 1.5 0.12 U58682 Human ribosomal protein S28 “mRNA,” complete cds 2145 375 I 1.2 0.08 145 NC 0 0 382 I 1.2 0.08 D86966 Human mRNA for KIAA0211 “gene,” complete cds 107 −37 D 1.5 0.08 −31 NC 0 0 −16 NC 0 0 D87017 C7 segment gene extracted from Human (lambda) DNA for immunoglobin light chain 238 * 87 I 1.4 0.08 44 NC 0 0 59 NC 0 0 M86752 Human transformation-sensitive protein (IEF SSP 3521) “mRNA,” complete cds 827 −171 D 1.3 0.08 −118 NC 0 0 −152 NC 0 0 U14394 Human tissue inhibitor of metalloproteinases-3 “mRNA,” complete cds 60 * 32 I 1.5 0.08 30 NC 0 0 27 NC 0 0 X75861 H. sapiens TEGT gene 1079 −214 D 1.2 0.08 2 NC 0 0 −141 NC 0 0 X83218 H. sapiens mRNA for ATP synthase 557 155 I 1.3 0.08 −52 NC 0 0 73 NC 0 0 X89750 H. sapiens mRNA for TGIF protein 146 59 I 1.4 0.08 −12 NC 0 0 77 NC 0 0 Y00757 Human mRNA for polypeptide 7B2 92 45 I 1.5 0.08 18 NC 0 0 −18 NC 0 0 −4 * 33 MI ˜1.5 0.07 117 I ˜5.6 1.86 21 NC 0 0 14 * 18 MI ˜1.6 0.07 93 MI ˜5.4 1.56 16 NC 0 0 D86956 Human mRNA for KIAA0201 “gene,” complete cds 34 −14 D ˜1.7 0.07 97 I 3.9 1.04 −8 NC 0 0 U31383 Human G protein gamma-10 subunit “mRNA,” complete cds 44 24 MI 1.5 0.07 110 I 3.5 0.96 19 NC 0 0 L10284 Homo sapiens integral membrane “protein,” “calnexin,” (IP90) “mRNA,” complete cds 296 −73 MD 1.3 0.07 197 I 1.7 0.26 −15 NC 0 0 M58460 Human 75-kD autoantigen (PM-Sc1) “mRNA,” complete cds 8 * 22 I ˜1.5 0.07 29 I ˜1.8 0.13 5 NC 0 0 U44103 Human small GTP binding protein Rab9 “mRNA,” complete cds. 16 16 I ˜1.6 0.07 19 I ˜1.7 0.09 −1 NC 0 0 Z22534 H. sapiens ALK-2 mRNA 48 26 I 1.5 0.07 20 MI 1.4 0.05 26 NC 0 0 M81601 Human transcription elongation factor (Sil) “mRNA,” complete cds 206 −57 MD 1.4 0.07 60 NC 0 0 −65 D 1.5 0.09 211 74 MI 1.3 0.07 −59 NC 0 0 66 NC 0 0 D14660 Human mRNA for KIAA0104 “gene,” complete cds 49 −19 D 1.6 0.07 3 NC 0 0 −18 NC 0 0 D28588 Human mRNA for KIAA0048 “gene,” complete cds 56 −20 D 1.6 0.07 −3 NC 0 0 −7 NC 0 0 G2147-HT221 Mucin “3,” intestinal (Gb:M55405) 454 117 MD 1.3 0.07 4 NC 0 0 50 NC 0 0 G3111-HT328 Autoantigen (Gb:S67069) 2697 425 I 1.2 0.07 178 NC 0 0 −340 NC 0 0 HG33-HT33 Ribosomal Protein S4, X-Linked 1777 322 MI 1.2 0.07 296 NC 0 0 268 NC 0 0 L00058 Human (GH) germline c-myc “proto-oncogene,” 5′ flank 94 −32 D 1.5 0.07 7 NC 0 0 18 NC 0 0 U65928 Human Jun activation domain binding protein “mRNA,” complete cds 173 61 I 1.4 0.07 −11 NC 0 0 −49 NC 0 0 X04327 Human erythrocyte “2,3-bisphosphoglycerate” mutase mRNA EC 2.7.5.4 13 * 19 MI ˜1.6 0.07 28 NC 0 0 3 NC 0 0 X53416 Human mRNA for actin-binding protein (filamin) (ABP-280) 1236 −210 D 1.2 0.07 −222 NC 0 0 54 NC 0 0 D31885 Human mRNA for KIAA0069 “gene,” partial cds 214 69 MI 1.3 0.06 164 I 1.8 0.28 −20 NC 0 0 Y00971 Human mRNA for phosphoriobosyl pyrophosphate synthetase subunit II (EC 2.7.6.1) 82 33 MI 1.4 0.06 58 I 1.7 0.15 11 NC 0 0 J04111 Human c-jun proto oncogene “(JUN),” complete “cds,” clone hCJ-1 10 * 19 I ˜1.5 0.06 26 I ˜1.8 0.12 11 NC 0 0 M37583 Human histone (H2A.Z) “mRNA,” complete cds 1398 233 MI 1.2 0.06 339 I 1.2 0.1 40 NC 0 0 Z21507 H. sapiens EF-1delta gene encoding human elongation factor-1-delta 1261 228 I 1.2 0.06 215 I 1.2 0.06 576 I 1.5 0.28 X92720 H. sapiens mRNA for phosphoenolpyruvate carboxykinase 246 74 MI 1.3 0.06 74 I 1.3 0.06 146 I 1.6 0.19 X61587 H. sapiens rhoG mRNA for GTPase 314 84 MI 1.3 0.06 48 I 1.2 0.02 164 I 1.5 0.17 X90858 H. sapiens mRNA for uridine phosphorylase 216 66 I 1.3 0.06 −16 NC 0 0 164 I 1.8 0.27 X85372 H. sapiens mRNA for Sm protein F 645 134 I 1.2 0.06 16 NC 0 0 61 I 1.1 0.02 L19783 Human GPI-H “mRNA,” complete cds 10 * 21 I ˜1.5 0.06 16 NC 0 0 12 I ˜1.1 0.01 AB000468 Human mRNA for zinc finger “protein,” clone “RES4-26,” complete cds 182 −47 D 1.3 0.06 −57 NC 0 0 −23 NC 0 0 D17400 Human mRNA for 6-pyruvoyl-tetrahydropterin “synthase,” complete cds 146 −42 D 1.4 0.06 23 NC 0 0 −47 NC 0 0 D83767 Human clone N9 Rep-8 “mRNA,” complete cds 32 −14 D ˜1.6 0.06 −7 NC 0 0 −19 NC 0 0 G2855-HT299 Heat Shock “Protein,” 70 Kda (Gb:Y00371) 1631 255 I 1.2 0.06 −16 NC 0 0 −196 NC 0 0 L11669 Human tetracycline transporter-like protein “mRNA,” complete cds 135 −39 MD 1.4 0.06 −21 NC 0 0 3 NC 0 0 M57703 Human melanin concentrating hormone (MCH) “mRNA,” complete cds — Also Repres 7 * 23 I ˜1.5 0.06 6 NC 0 0 4 NC 0 0 S80562 acidic calponin “[human,” “kidney,” “mRNA,” 1607 nt] 184 61 I 1.3 0.06 91 NC 0 0 21 NC 0 0 U07418 Human DNA mismatch repair (hmlh1) “mRNA,” complete cds 129 45 I 1.3 0.06 72 NC 0 0 43 NC 0 0 U28014 Human cysteine protease (ICErel-II) “mRNA,” complete cds 105 40 MI 1.4 0.06 62 NC 0 0 15 NC 0 0 U59289 Human H-cadherin “mRNA,” complete cds 23 * 14 MI 1.6 0.06 11 NC 0 0 10 NC 0 0 X02317 Human mRNA for Cu/Zn superoxide dismutase (SOD) 1055 206 I 1.2 0.06 −48 NC 0 0 −20 NC 0 0 X74104 H. sapiens mRNA for TRAP beta subunit 1150 208 I 1.2 0.06 −87 NC 0 0 75 NC 0 0 X82153 H. sapiens mRNA for cathepsin O 31 * −18 MD ˜1.5 0.06 3 NC 0 0 −7 NC 0 0 X94754 H. sapiens mRNA for yeast methionyl-tRNA synthetase homologue 892 −159 D 1.2 0.06 81 NC 0 0 81 NC 0 0 Z48570 H. sapiens Sp17 gene 13 * 19 I ˜1.6 0.06 −8 NC 0 0 9 NC 0 0 D90070 Human ATL-derived PMA-responsive (APR) peptide mRNA — Also Represents: M572 4 * 23 I ˜1.4 0.05 65 I ˜3.5 0.71 38 I ˜2.1 0.21 U83115 Human non-lens beta gamma-crystallin like protein (AIM1) “mRNA,” partial cds 66 −20 MD 1.4 0.05 49 I 1.7 0.15 −17 NC 0 0 U25975 Human serine kinase (hPAK65) “mRNA,” partial cds 53 −17 MD 1.5 0.05 30 MI 1.6 0.08 −12 NC 0 0 M16652 Human pancreatic elastase IIA “mRNA,” complete cds — Also Represents: M16653 483 −93 MD 1.2 0.05 −111 D 1.3 0.07 −66 NC 0 0 X68242 H. sapiens mRNA for Hin-1 30 −17 D ˜1.5 0.05 −20 MD ˜1.5 0.06 −21 D ˜1.5 0.06 AB006781 Homo sapiens mRNA for “galectin-4,” complete cds. /gb = AB006781 /ntype = RNA — Al 29 −19 D ˜1.5 0.05 −25 MD ˜1.5 0.06 −18 D ˜1.5 0.05 D87073 Human mRNA for KIAA0236 “gene,” complete cds 28 * −27 D ˜1.4 0.05 −22 D ˜1.4 0.05 −18 NC 0 0 U47105 Human H105e3 “mRNA,” complete cds 148 −38 D 1.3 0.05 −29 D 1.2 0.03 −47 D 1.5 0.08 Z18948 H. sapiens mRNA for S100E calcium binding protein 38 * 18 MI 1.5 0.05 −68 NC 0 0 70 I 2.9 0.53 U50939 Human amyloid precursor protein-binding protein 1 “mRNA,” complete cds 55 −18 D 1.5 0.05 −1 NC 0 0 −34 D 2.6 0.3 M35296 Human tyrosine kinase arg gene mRNA 79 −23 D 1.4 0.05 −10 NC 0 0 −42 D 2.1 0.23 X13967 Human mRNA for leukaemia inhibitory factor (LIF/HILDA) 181 51 I 1.3 0.05 −3 NC 0 0 102 MI 1.6 0.15 U94855 Human translation initiation factor 3 47 kDa subunit “mRNA,” complete cds. 1571 224 I 1.1 0.05 −137 NC 0 0 351 I 1.2 0.1 D13748 Human mRNA for eukaryotic initiation factor 4AI 2721 355 I 1.1 0.05 233 NC 0 0 448 I 1.2 0.08 J00117 Human chorionic gonadotropin (hcg) beta subunit “mRNA,” complete cds 232 −53 D 1.3 0.05 −59 NC 0 0 −38 MD 1.2 0.03 X87838 H. sapiens mRNA for beta-catenin 429 97 I 1.2 0.05 99 NC 0 0 72 I 1.2 0.03 D25216 Human mRNA for KIAA0014 “gene,” complete cds 381 −76 MD 1.2 0.05 −112 NC 0 0 −116 NC 0 0 D61380 Human mRNA for DJ-1 “protein,” complete cds 1209 193 I 1.2 0.05 −25 NC 0 0 −29 NC 0 0 G1112-HT111 Ras-Like Protein Tc4 1287 199 I 1.2 0.05 112 NC 0 0 157 NC 0 0 J02683 Human ADP/ATP carrier protein “mRNA,” complete cds — Also Represents: M57424_(—) 1731 250 I 1.1 0.05 93 NC 0 0 128 NC 0 0 J03040 Human SPARC/osteonectin “mRNA,” complete cds 1037 −151 D 1.2 0.05 228 NC 0 0 17 NC 0 0 L00352 Human low density lipoprotein receptor gene 143 −36 D 1.3 0.05 19 NC 0 0 16 NC 0 0 M16447 Human dihydropteridine reductase (hDHPR) “mRNA,” complete cds 74 −22 D 1.4 0.05 −23 NC 0 0 −16 NC 0 0 U57877 Human integral membrane protein CII-3 “mRNA,” nuclear gene encoding mitochondr 140 46 MI 1.3 0.05 −1 NC 0 0 40 NC 0 0 U78027 L44L gene (L44-like ribosomal protein) extracted from Human Bruton's tyrosine kinas 2179 290 I 1.1 0.05 196 NC 0 0 −231 NC 0 0 U90549 Human non-histone chromosomal protein (NHC) “mRNA,” complete cds 277 73 MI 1.3 0.05 −84 NC 0 0 −14 NC 0 0 X81788 H. sapiens DS-1 mRNA 192 52 MI 1.3 0.05 9 NC 0 0 15 NC 0 0 Y07596 H. sapiens mRNA for GP18 protein −8 * 36 I ˜1.4 0.05 27 I ˜1.0 0 26 NC 0 0 Y11897 H. sapiens Brx gene 3′UTR. /gb = Y11897 /ntype = RNA 65 * 26 I 1.4 0.05 −29 NC 0 0 15 NC 0 0 U82311 Human unknown protein “mRNA,” partial cds. /gb = U82311 /ntype = RNA 231 −44 MD 1.2 0.04 −165 MD 3.5 1.17 −31 NC 0 0 U49837 Human LIM protein MLP “mRNA,” complete cds −16 * 42 I ˜1.3 0.04 66 I ˜2.5 0.4 40 I ˜1.2 0.03 U07802 Human Tis11d “gene,” complete cds 10 * 18 I ˜1.4 0.04 29 I ˜2.0 0.15 20 I ˜1.5 0.06 S77576 ERV9 reverse transcriptase homolog (clone RT18) “[human,” multiple “sclerosis,” bra 41 * −12 MD 1.4 0.04 −21 D ˜2.1 0.15 −7 MD 1.2 0.01 U78556 Human cisplatin resistance associated alpha protein (hCRA alpha) “mRNA,” complet 215 50 I 1.2 0.04 89 I 1.4 0.1 −20 NC 0 0 M26708 Human prothymosin alpha mRNA “(ProT-alpha),” complete cds — “Also Represents: N 2208 235 I 1.1 0.04 400 I 1.2 0.08 −260 NC 0 0 M62402 Human insulin-like growth factor binding protein 6 (IGFBP6) “mRNA,” complete cds 259 −51 D 1.2 0.04 −65 D 1.3 0.07 −53 D 1.3 0.04 S78187 CDC25Hu2 = cdc25+ homolog “[human,” “mRNA,” 3118 nt] 291 −58 MD 1.3 0.04 −54 D 1.2 0.04 7 NC 0 0 X66785 H. sapiens mRNA for transacylase (DBT) 101 −24 D 1.3 0.04 −23 D 1.3 0.03 −46 D 1.8 0.17 M27543 Human guanine nucleotide-binding protein (GI) alpha subunit “mRNA,” complete cds −15 * 41 I ˜1.3 0.04 40 I ˜1.2 0.03 24 I ˜1.0 0 M63483 Human major nuclear matrix protein mRNA 70 −20 D 1.4 0.04 104 NC 0 0 −28 D 1.7 0.1 D14657 Human mRNA for KIAA0101 “gene,” complete cds 248 −48 D 1.2 0.04 6 D 1 0 −74 D 1.4 0.09 U32944 Human cytoplasmic dynein light chain 1 (hdlc1) “mRNA,” complete cds 731 119 MI 1.2 0.04 131 NC 0 0 198 I 1.3 0.09 D83785 Human mRNA for KIAA0200 “gene,” complete cds 70 −20 MD 1.4 0.04 2 NC 0 0 −23 MD 1.5 0.06 M61199 Human cleavage signal 1 protein “mRNA,” complete cds 27 −27 D ˜1.3 0.04 11 NC 0 0 −34 D ˜1.3 0.05 U51004 Human putative protein kinase C inhibitor (PKCI-1) “mRNA,” complete cds 1056 158 I 1.1 0.04 −135 NC 0 0 187 I 1.2 0.05 U60060 Human FEZ1 “mRNA,” complete cds 27 * −24 D ˜1.3 0.04 −19 NC 0 0 −33 D ˜1.3 0.05 X70218 H. sapiens mRNA for protein phosphatase X 812 135 MI 1.2 0.04 −7 NC 0 0 137 I 1.2 0.04 D25547 Human mRNA for PIMT isozyme “I,” complete cds 100 30 MI 1.3 0.04 −51 NC 0 0 24 MI 1.2 0.03 X67698 H. sapiens tissue specific mRNA 454 81 MI 1.2 0.04 −156 NC 0 0 57 I 1.1 0.02 −4 * 30 I ˜1.3 0.04 6 NC 0 0 3 NC 0 0 D10495 Human mRNA for protein kinase C delta-type 108 −27 D 1.3 0.04 −18 NC 0 0 3 NC 0 0 D87461 Human mRNA for KIAA0271 “gene,” complete cds 17 * 12 I ˜1.4 0.04 −16 NC 0 0 −7 NC 0 0 K02405 Human MHC class II HLA-DC-3-beta gene “(DR3,3)” 94 −22 MD 1.3 0.04 −17 NC 0 0 −24 NC 0 0 M98343 Homo sapiens amplaxin (EMS1) “mRNA,” complete cds 32 * −10 I 1.5 0.04 −57 NC 0 0 −53 NC 0 0 X13482 Human mRNA for U2 snRNP-specific A′ protein 263 63 I 1.2 0.04 8 NC 0 0 10 NC 0 0 X64229 H. sapiens dek mRNA 28 −17 D ˜1.4 0.04 24 NC 0 0 −10 NC 0 0 X76770 H. sapiens PAP mRNA 137 −30 MD 1.3 0.04 −40 NC 0 0 −8 NC 0 0 Z46629 Homo sapiens SOX9 mRNA 82 * 21 I 1.3 0.03 23 I 1.3 0.03 15 I 1.2 0.02 L19437 Human transaidolase mRNA containing transposable “element,” complete cds 365 −55 D 1.2 0.03 −32 D 1.1 0.01 −24 NC 0 0 Z70219 H. sapiens mRNA for 5′UTR for unknown protein (clone ICRFp507C0696). /gb = Z702 33 * 12 MI 1.4 0.03 −5 NC 0 0 24 MI 1.7 0.1 U61234 Human tubulin-folding cofactor C “mRNA,” complete cds 67 19 I 1.3 0.03 −3 NC 0 0 32 MI 1.5 0.07 L07541 Human replication factor “C,” 38-kDa subunit “mRNA,” complete cds 26 −19 D ˜1.3 0.03 −2 NC 0 0 −16 D ˜1.3 0.03 D49354 Human mRNA for enhancer protein in hsp70 “gene,” partial cds — “Also Represents: 25 −27 D ˜1.2 0.03 −3 NC 0 0 −14 NC 0 0 L11708 Human 17 beta hydroxysteroid dehydrogenase type 2 “mRNA,” complete cds 25 * −23 D ˜1.3 0.03 −7 NC 0 0 −23 NC 0 0 L19527 Homo sapiens ribosomal protein L27 (RPL27) “mRNA,” complete cds 3541 286 I 1.1 0.03 −154 NC 0 0 246 NC 0 0 M25756 Human secretogranin II “gene,” complete cds 26 * −22 D ˜1.3 0.03 13 NC 0 0 −19 NC 0 0 M26880 Human ublquitin “mRNA,” complete cds 997 128 MI 1.1 0.03 110 NC 0 0 −63 NC 0 0 S54005 thymosin beta-10 “[human,” metastatic melanoma cell “line,” “mRNA,” 453 nl] — Also 2124 194 MI 1.1 0.03 −8 NC 0 0 −98 NC 0 0 U07857 Human 18 kDa Alu RNA binding protein “mRNA,” complete cds 346 57 MI 1.2 0.03 46 NC 0 0 −35 NC 0 0 U16861 Human inward rectifying potassium channel “mRNA,” complete cds 26 * −27 D ˜1.3 0.03 −25 NC 0 0 −26 NC 0 0 U25165 Human fragile X mental retardation protein 1 homolog FXR1 “mRNA,” complete cds 33 −10 MD 1.4 0.03 47 NC 0 0 −4 NC 0 0 U85767 Human myeloid progenitor inhibitory factor-1 MPIF-1 “mRNA,” complete cds −17 * 41 I ˜1.2 0.03 79 NC 0 0 35 NC 0 0 X72841 H. sapiens IEF 7442 mRNA 292 57 I 1.2 0.03 −11 NC 0 0 6 NC 0 0 X75308 H. sapiens mRNA for collagenase 3 26 * −18 MD ˜1.3 0.03 −20 NC 0 0 −18 NC 0 0 Z80787 H. sapiens H4/j gene 26 * −20 MD ˜1.3 0.03 −20 NC 0 0 −7 NC 0 0 X83416 H. sapiens PrP “gene,” exon 2 — “Also Represents: D00015_ma1, D00015” 326 41 MI 1.1 0.02 155 I 1.5 0.15 −65 NC 0 0 D78577 Human DNA for 14-3-3 protein eta chain — Also Represents: L20422 635 60 MI 1.1 0.02 173 I 1.3 0.08 −55 NC 0 0 L00389 Human cytochrome P-450 4 gene 113 * −19 MI 1.2 0.02 36 MI 1.3 0.05 −26 NC 0 0 X98248 H. sapiens mRNA for sortllin 259 34 I 1.1 0.02 −17 NC 0 0 211 I 1.8 0.34 Z28407 H. sapiens mRNA for ribosomal protein L8 7077 303 I 1 0.02 264 NC 0 0 1496 I 1.2 0.19 S82471 SSX3 = Kruppet-associated box containing SSX gene “[human,” “testis,” mRNA “Parti 128 −18 MD 1.2 0.02 33 NC 0 0 −41 D 1.5 0.08 D83781 Human mRNA for KIAA0197 “gene,” partial cds 7 * 18 I ˜1.3 0.02 15 NC 0 0 19 I ˜1.3 0.03 U49869 Human ublquitin “gene,” complete cds 5047 241 I 1 0.02 −1241 NC 0 0 205 I 1 0.01 D31888 Human mRNA for KIAA0071 “gene,” partial cds 24 −25 D ˜1.2 0.02 13 NC 0 0 −4 NC 0 0 G1862-HT189 Calmodulin Type I 229 −31 D 1.2 0.02 97 NC 0 0 −45 NC 0 0 G3187-HT336 Tyrosine Phosphatase “1,” “Non-Receptor,” Alt. Splice 3 — “Also Represents: HG3187 23 * −30 MD ˜1.1 0.02 −18 NC 0 0 −15 NC 0 0 L42379 Homo sapiens bone-derived growth factor (BPGF-1) “mRNA,” complete cds 242 −30 MD 1.1 0.02 39 NC 0 0 122 NC 0 0 M10277 Human cytoplasmic beta-actin “gene,” complete cds — Also Represents: HSAC07/X0 5913 284 I 1 0.02 −300 NC 0 0 19 NC 0 0 M14199 Human laminin receptor (2H5 epitope) “mRNA,” 5′ end — “Also Represents: HG1773- 7808 351 MI 1 0.02 −1190 NC 0 0 −842 NC 0 0 M14328 Human alpha enolase “mRNA,” complete cds — Also Represents: M55914 4800 317 I 1.1 0.02 −278 NC 0 0 78 NC 0 0 M81637 Human grancalcin “mRNA,” complete cds −9 * 32 I ˜1.2 0.02 2 NC 0 0 14 NC 0 0 M89955 Human 5-HT1D-type serotonin receptor “gene,” complete cds −17 * 40 MI ˜1.1 0.02 8 NC 0 0 19 NC 0 0 U10868 Human aldehyde dehydrogenase ALDH7 “mRNA,” complete cds 72 * 16 MI 1.2 0.02 5 NC 0 0 2 NC 0 0 U14518 Human centromere protein-A (CENP-A) “mRNA,” complete cds 63 −12 D 1.2 0.02 26 NC 0 0 5 NC 0 0 U19261 Human Epstein-Barr virus-induced protein “mRNA,” complete cds 46 12 D 1.3 0.02 −26 NC 0 0 2 NC 0 0 U25433 Human protein associated with tumorigenic conversion (CATR1.3) “mRNA,” complete 0 * 24 I ˜1.2 0.02 6 NC 0 0 10 NC 0 0 U40992 Human heat shock protein hsp40 homolog “mRNA,” complete cds −8 * 31 I ˜1.1 0.02 30 NC 0 0 7 NC 0 0 U41813 Human class I homeoprotein (HOXA9) “mRNA,” partial cds 15 * 10 MI ˜1.2 0.02 10 NC 0 0 −1 NC 0 0 U83598 Human death domain receptor 3 soluble form (DDR3) “mRNA,” partial cds — Also Rep 89 −16 MD 1.2 0.02 −11 NC 0 0 21 NC 0 0 X52009 H. sapiens alpha-1 strychnine binding subunit of inhibitory glycine receptor mRNA. — A 25 * −12 D ˜1.3 0.02 −20 NC 0 0 −20 NC 0 0 U25789 Human ribosomal protein L21 “mRNA,” complete cds 2072 67 MI 1 0.01 −655 D 1.5 0.3 −436 NC 0 0 D42087 Human mRNA for KIAA0118 “gene,” partial cds 55 11 I 1.2 0.01 48 I 1.9 0.17 −7 NC 0 0 U02081 Human guanine nucleotide regulatory protein (NET1) “mRNA,” complete cds 11 * 12 I ˜1.1 0.01 27 I ˜1.9 0.14 10 NC 0 0 L10838 Homo sapiens SR protein “family,” pre-mRNA splicing factor (SRp20) “mRNA,” comp 531 −29 MD 1.1 0.01 160 I 1.3 0.09 −48 NC 0 0 U50360 Human “calcium,” calmodulin-dependent protein kinase II gamma “mRNA,” partial cd −15 * 36 I ˜1.1 0.01 44 I ˜1.5 0.08 13 NC 0 0 Z11559 H. sapiens mRNA for iron regulatory factor 109 14 I 1.1 0.01 27 NC 0 0 85 I 1.8 0.21 X69978 H. sapiens mRNA for XP-G factor 47 5 D 1.1 0.01 14 NC 0 0 7 D 1.1 0.01 −7 * 28 I ˜1.1 0.01 23 MI ˜1.0 0 26 MI ˜1.0 0 D21063 Human mRNA for KIAA0030 “gene,” partial cds 382 −33 D 1.1 0.01 70 NC 0 0 89 NC 0 0 G3254-HT343 Phosphalidylinositol 3-Kinase “P110,” Beta isoform 23 * −17 D ˜1.1 0.01 7 NC 0 0 −8 NC 0 0 G3925-HT419 Surfactant Protein Sp-A2 Delta — “Also Represents: M30838, M68519_ma1, HG3928- −2 * 24 I ˜1.1 0.01 20 MI ˜1.0 0 10 NC 0 0 M29610 Human glycophorin E “mRNA,” complete cds — Also Represents: J02982 22 −22 D ˜1.1 0.01 −6 NC 0 0 −19 NC 0 0 M69238 Human aryl hydrocarbon receptor nuclear translocator (ARNT) “mRNA,” complete cd −26 * 47 MI ˜1.1 0.01 36 NC 0 0 25 NC 0 0 U38980 Human PMS2 related (hPMSR6) “mRNA,” complete cds 152 * −20 MD 1.1 0.01 31 NC 0 0 16 NC 0 0 U58334 Human “Bcl2,” p53 binding protein Bbp/53BP2 (BBP/53BP2) “mRNA,” complete cds 49 8 D 1.2 0.01 44 NC 0 0 17 NC 0 0 U82467 Human tub homolog (TUB) “mRNA,” complete cds. 21 * −39 MD ˜1.1 0.01 −25 NC 0 0 −19 NC 0 0 X14767 Human mRNA for GABA-A “receptor,” beta 1 subunit 24 * 5 I 1.2 0.01 18 NC 0 0 −11 NC 0 0 X53777 Human L23 mRNA for putative ribosomal protein 4719 210 I 1 0.01 −632 NC 0 0 −133 NC 0 0 X79201 H. sapiens mRNA for SYT 24 −8 D ˜1.2 0.01 4 NC 0 0 −2 MD 1.1 0 Y00787 Human mRNA for MDNCF (monocyte-derived neutrophil chemotactic factor) — “Also 4 * 17 I ˜1.1 0.01 15 MI ˜1.0 0 −1 NC 0 0 U73499 Human hapatic nuclear factor 1-alpha (TCF-1-alpha) “gene,” promoter region and pa 189 * −68 NC 0 0 −244 MD ˜9.4 4.5 −35 NC 0 0 X16707 Human fra-1 mRNA 18 * 25 NC 0 0 196 I ˜10.7 4.48 236 I ˜12.7 5.58 M21388 Human unproductively rearranged lg mu-chain mRNA V-region (VD), 5′ end, clone m −7 187 NC 0 0 200 I ˜9.7 4.17 258 I ˜12.5 5.78 D38293 Human mRNA for clathrin-like “protein,” complete cds 28 * −1 NC 0 0 218 MI 8.9 4.05 −13 NC 0 0 22 43 NC 0 0 185 I 9.2 3.86 51 I 3.3 0.58 −36 * 20 NC 0 0 207 I ˜8.5 3.8 43 NC 0 0 U50648 Human interferon-inducible RNA-dependent protein kinase (Pkr) gene — “Also Repres 39 * 29 NC 0 0 233 I 7 3.36 −6 NC 0 0 X89416 H. sapiens mRNA for protein phosphatase 5 49 54 NC 0 0 256 I 6.2 3.09 110 MI 3.3 0.84 Z78289 H. sapiens mRNA (clone 1D2). /gb = Z78289 /ntype = DNA /annol = mRNA 182 * −81 NC 0 0 −158 D 7.6 3 −31 NC 0 0 U22431 Human hypoxia-inducible factor 1 alpha (HIF-1 alpha) “mRNA,” complete cds — “Also 29 * 4 NC 0 0 175 I 7.1 2.93 21 NC 0 0 Y09836 H. sapiens mRNA for 3′UTR of unknown protein 11 * −30 NC 0 0 139 I ˜7.5 2.75 24 NC 0 0 Z50194 H. sapiens mRNA for PQ-rich protein 46 57 NC 0 0 199 I 5.3 2.28 164 I 4.5 1.69 G3543-HT373 Insulin-Like Growth Factor 2 129 −37 NC 0 0 −129 D ˜6.4 2.27 −14 NC 0 0 U76010 Human putative zinc transporter ZnT-3 (ZnT-3) “mRNA,” complete cds. 469 −179 NC 0 0 −351 D 4 2.07 −173 NC 0 0 U88047 Human DNA binding protein homolog (DRX) “mRNA,” partial cds −40 * 117 NC 0 0 147 I ˜5.4 1.97 146 NC 0 0 U41766 Human metalloprotease/disintegrin/cysteine-rich protein precursor (MDC9) “mRNA,” 25 * 5 NC 0 0 110 I 5.3 1.69 −7 NC 0 0 10 * 16 NC 0 0 100 I ˜5.5 1.67 10 NC 0 0 X78817 H. sapiens partial C1 mRNA 206 * −61 NC 0 0 −160 D 4.5 1.65 −31 NC 0 0 −19 * 33 NC 0 0 120 I ˜5.0 1.64 48 I ˜1.4 0.07 U41387 Human Gu protein “mRNA,” partial cds 53 3 NC 0 0 173 I 4.3 1.6 4 NC 0 0 39 * 89 NC 0 0 129 I 4.3 1.4 29 MI 1.8 0.12 X70649 H. sapiens cl. 1042 mRNA of DEAD box protein family 49 * 32 NC 0 0 150 I 4.1 1.38 1 NC 0 0 D79999 Human mRNA for KIAA0177 “gene,” partial cds 32 * −10 NC 0 0 109 I 4.4 1.33 11 NC 0 0 U79291 Human clone 23721 mRNA sequence 16 * −18 NC 0 0 82 I ˜4.9 1.3 4 NC 0 0 J03473 Human poly(ADP-ribose) synthetase “mRNA,” complete cds 61 69 NC 0 0 164 I 3.7 1.26 85 I 2.4 0.42 U58046 Human p167 “mRNA,” complete cds — Also Represents: D50929 21 −4 NC 0 0 79 I 4.7 1.22 −7 NC 0 0 U62437 Human nicotinic acetylcholine receptor beta2 subunit “precursor,” “mRNA,” complete 78 −89 NC 0 0 −107 D ˜3.9 1.1 −58 NC 0 0 M94880 Human MHC class I (HLA-A*8001) mRNA — “Also Similar To: M80469_ma1, M80468 127 124 NC 0 0 241 I 2.9 1.02 244 I 2.9 1.04 L14076 Human pre-mRNA splicing factor SRp75 “mRNA,” complete cds 31 63 NC 0 0 90 MI 3.9 1.02 46 NC 0 0 X07979 Human mRNA for fibronectin receptor beta subunit 682 −41 NC 0 0 790 I 2.2 1.01 −184 D 1.4 0.12 D29640 Human mRNA for KIAA0051 “gene,” complete cds — Also Represents: L33075 26 7 NC 0 0 77 I 4 0.97 11 NC 0 0 U12139 Human alpha1(XI) collagen (COL11a1) “gene,” 5′ region and exon 1 /gb = U12139 /nt 66 * −54 NC 0 0 −136 D ˜3.3 0.95 −54 NC 0 0 S72008 hCDC10 = CDC10 homolog “[human,” fetal “lung,” “mRNA,” 2314 nt] 43 −12 NC 0 0 106 I 3.5 0.92 0 NC 0 0 G3214-HT339 Metallopanstimulin 1 4442 −579 NC 0 0 −1874 D 1.7 0.88 −438 D 1.1 0.05 L47276 Homo sapiens (cell line HL-60) alpha topolsomerase truncated-form “mRNA,” 3′UTR 58 1 NC 0 0 128 I 3.2 0.88 −8 NC 0 0 7505 221 NC 0 0 3946 I 1.5 0.86 1205 NC 0 0 U05040 Human FUSE binding protein “mRNA,” complete cds 60 * 24 NC 0 0 129 I 3.1 0.86 3 NC 0 0 D79986 Human mRNA for KIAA0164 “gene,” complete cds 4 * 25 NC 0 0 71 I ˜3.8 0.85 15 NC 0 0 L13210 Human Mac-2 binding protein “mRNA,” complete cds 463 156 NC 0 0 526 I 2.1 0.81 483 I 2 0.7 D16481 Human mRNA for mitochondrial 3-ketoacyl-CoA thiolase beta-subunit of trifunctional 45 * 41 NC 0 0 102 I 3.2 0.8 57 I 2.3 0.31 M14660 Human ISG-54K gene (interferon stimulated gene) encoding a 54 kDa protein −62 * 57 I ˜1.0 0 123 I ˜3.1 0.8 57 I ˜1.0 0 Y07604 H. sapiens mRNA for nucleoside-diphosphate kinase 194 20 NC 0 0 277 I 2.4 0.77 151 I 1.8 0.27 M21259 Human Alu repeats in the region 5′ to the small nuclear ribonucleoprotein E gene 102 122 NC 0 0 176 I 2.7 0.77 91 I 1.9 0.25 U81554 Human CaM kinase II isoform “mRNA,” complete cds. /gb = U81554 /ntype = RNA 112 52 NC 0 0 185 I 2.7 0.75 5 NC 0 0 U70370 Human hindIImb expressed homeobox protein backfoot (Bft) “mRNA,” complete cds −112 * 75 MI ˜1.0 0 166 MI ˜2.7 0.74 84 I ˜1.0 0 Z25535 H. sapiens mRNA for nuclear pore complex protein hnup153 22 * 12 NC 0 0 60 I 3.7 0.74 26 NC 0 0 Z48042 H. sapiens mRNA encoding GPI-anchored protein p137 220 89 NC 0 0 288 I 2.3 0.71 137 I 1.6 0.2 31 * −6 NC 0 0 72 MI 3.3 0.71 33 I 2.1 0.19 5559 −17 NC 0 0 2845 I 1.5 0.71 −620 NC 0 0 X54326 H. sapiens mRNA for glutaminyl-tRNA synthetase 49 * −11 NC 0 0 100 I 3 0.71 −5 NC 0 0 X15187 Human tra1 mRNA for human homologue of murine tumor rejection antigen gp96 125 3 NC 0 0 191 I 2.5 0.7 −23 NC 0 0 X60036 H. sapiens mRNA for mitochondrial phosphate carrier protein 3078 −156 NC 0 0 −1270 D 1.7 0.7 −96 NC 0 0 3 * 27 NC 0 0 65 I ˜3.4 0.69 28 MI ˜1.5 0.07 0 * 49 NC 0 0 67 MI ˜3.4 0.68 47 MI ˜2.4 0.3 U61232 Human tubulin-folding cofactor E “mRNA,” complete cds 69 −18 NC 0 0 −59 D ˜3.5 0.68 −18 NC 0 0 U30894 Human N-sulphoglucosamine sulphohydrolase “mRNA,” complete cds 71 −32 NC 0 0 −55 D ˜3.5 0.67 −15 NC 0 0 D63875 Human mRNA for KIAA0155 “gene,” complete cds 14 −1 NC 0 0 55 I ˜3.5 0.66 12 NC 0 0 M85164 Homo sapiens SRF accessory protein 1B (SAP-1) “mRNA,” complete cds 11 * 9 NC 0 0 56 I ˜3.4 0.63 21 I ˜1.6 0.07 U34605 Human retinoic acid- and interferon-inducible 58K protein RI58 “mRNA,” complete cd 8 * 8 NC 0 0 59 I ˜3.3 0.62 13 NC 0 0 L08069 Human heat shock “protein,” E. coli DnaJ homologue “mRNA,” complete cds 168 81 NC 0 0 218 I 2.3 0.61 15 NC 0 0 X92396 H. sapiens mRNA for novel gene in Xq28 region 78 1 NC 0 0 126 I 2.6 0.6 −7 NC 0 0 X98260 H. sapiens mRNA for M-phase “phosphoprotein,” mpp11 −9 * 15 NC 0 0 70 I ˜3.1 0.6 2 NC 0 0 M23161 Human transposon-like element mRNA 112 16 NC 0 0 161 I 2.4 0.59 −35 NC 0 0 M28249 Human very late antigen-2 (VLA-2)/collagen receptor alpha-2 subunit “mRNA,” comp 31 * −3 NC 0 0 65 I 3.1 0.59 −9 NC 0 0 M82882 Human cis-acting sequence 2 * 20 NC 0 0 61 I ˜3.1 0.59 7 NC 0 0 X05276 Human mRNA for fibroblast tropomyosin TM30 (pl) 414 38 NC 0 0 406 I 2 0.59 −81 NC 0 0 D13630 Human mRNA for KIAA0005 “gene,” complete cds 199 111 NC 0 0 238 I 2.2 0.58 41 NC 0 0 L23959 Homo sapiens E2F-related transcription factor (DP-1) “mRNA,” complete cds 33 −30 NC 0 0 67 MI 3 0.58 −21 NC 0 0 D16480 Human mRNA for mitochobdrial enoyl-CoA hydratase/3-hydroxyacyl-CoA dehydroge 92 * 27 NC 0 0 136 MI 2.5 0.57 14 NC 0 0 G2743-HT392 Caldesmon “1,” Alt. Splice “6,” Non-Muscle — “Also Represents: HG2743-HT3927, M 3 * 6 NC 0 0 60 I ˜3.1 0.57 2 NC 0 0 U45973 Human phosphalidylinositol “(4,5)bisphosphate” 5-phosphatase homolog “mRNA,” pa 236 −58 NC 0 0 −141 D 2.5 0.57 −43 NC 0 0 M20867 Human glutamate dehydrogenase (GDH) “mRNA,” complete cds — Also Represents: 98 85 NC 0 0 141 I 2.4 0.56 48 NC 0 0 U78798 Human TNF receptor associated factor 6 (TRAF6) “mRNA,” complete cds. 117 −72 NC 0 0 −76 MD 2.8 0.55 −88 D 4.1 1.08 J04102 Human erythroblastosis virus oncogene homolog 2 (ets-2) “mRNA,” complete cds 20 * −6 NC 0 0 47 MI 3.3 0.55 14 NC 0 0 X60188 Human ERK1 mRNA for protein serine/threonine kinase 214 −88 NC 0 0 −128 D 2.5 0.55 −18 NC 0 0 10717 −1650 NC 0 0 −3023 D 1.4 0.54 −1322 D 1.1 0.11 G3638-HT384 Amyloid Beta (A4) Precursor “Protein,” Alt. Splice “2,” A4(751) — Also Represents: YO 93 47 NC 0 0 134 I 2.4 0.54 58 NC 0 0 M77698 Homo sapiens GLI-Krupple related protein (YY1) “mRNA,” complete cds 114 36 NC 0 0 154 I 2.3 0.54 37 NC 0 0 X96969 H. sapiens mRNA for urea transporter 62 * −11 NC 0 0 −53 D ˜3.1 0.54 −3 NC 0 0 Z69915 H. sapiens mRNA (clone ICRFp507L1876). /gb = Z69915 /ntype = RNA 23 * 4 NC 0 0 50 I 3.2 0.54 5 NC 0 0 AB001106 Human mRNA for glia maturation “factor,” complete cds 6 * 9 NC 0 0 55 I ˜3.0 0.53 16 NC 0 0 X62534 H. sapiens HMG-2 mRNA — “Also Represents: Z17240, M83665_ma1” 164 29 NC 0 0 195 I 2.2 0.52 −37 NC 0 0 D38551 Human mRNA for KIAA0078 “gene,” complete cds 35 5 NC 0 0 66 I 2.8 0.51 8 NC 0 0 D63477 Human mRNA for KIAA0143 “gene,” partial cds 45 15 NC 0 0 77 I 2.7 0.51 −6 NC 0 0 L06499 Homo sapiens ribosomal protein L37a (RPL37A) “mRNA,” complete cds 9324 −1501 NC 0 0 −2660 D 1.4 0.51 −1592 NC 0 0 U28811 Human cysteine-rich fibroblast growth factor receptor (CFR-1) “mRNA,” complete cds 93 −36 NC 0 0 −61 D 2.9 0.51 −51 NC 0 0 X55715 Human Hums3 mRNA for 40S ribosomal protein s3 7796 −175 NC 0 0 −2315 MD 1.4 0.51 −838 NC 0 0 Z15115 H. sapiens TOP2 mRNA for DNA topoisomerase II (partial) 41 −24 NC 0 0 71 MI 2.7 0.5 −21 D ˜2.0 0.14 U26312 Human heterochromatin protein HP1Hs-gamma “mRNA,” complete cds — Also Repre 64 4 NC 0 0 99 MI 2.5 0.5 −19 NC 0 0 −25 * 21 NC 0 0 79 I ˜2.7 0.49 51 I ˜1.3 0.04 X74039 H. sapiens mRNA for urokinase plasminogen activator receptor 22 * 30 NC 0 0 46 MI 3.1 0.49 27 NC 0 0 D63861 Human DNA for cyclophilin “40,” complete cds — Also Represents: L11667 50 22 NC 0 0 80 I 2.6 0.48 3 NC 0 0 G2755-HT288 T-Plastin 64 1 NC 0 0 95 I 2.5 0.48 −34 NC 0 0 X66363 H. sapiens mRNA PCTAIRE-1 for serine/threonine protein kinase 68 * 20 NC 0 0 99 I 2.4 0.47 46 MI 1.7 0.13 U19252 Human putative transmembrane protein “mRNA,” complete cds — Also Represents: U 11 * 13 NC 0 0 48 I ˜3.0 0.47 19 NC 0 0 D23660 Human mRNA for ribosomal “protein,” complete cds 5996 79 NC 0 0 −1804 D 1.4 0.46 −1017 NC 0 0 −17 * 45 NC 0 0 70 I ˜2.6 0.45 58 NC 0 0 G4557-HT496 Small Nuclear Ribonucleoprotein “U1,” 1snrp −3 * 8 NC 0 0 58 I ˜2.8 0.45 11 NC 0 0 J04088 Human DNA topoisomerase II (top2) “mRNA,” complete cds 33 * 3 NC 0 0 59 I 2.7 0.45 −2 NC 0 0 M63896 Homo sapiens transcriptional enhancer factor (TEF1) “DNA,” complete CDS 15 * 7 NC 0 0 44 I ˜3.0 0.45 −5 NC 0 0 X01677 Human liver mRNA for glyceraldehyde-3-phosphate dehydrogenase “(G3PD,” EC 1.2 9394 −1733 NC 0 0 −2482 D 1.4 0.44 −1164 NC 0 0 X80200 H. sapiens MLN62 mRNA 302 8 NC 0 0 −160 MD 2.1 0.44 −9 NC 0 0 G4660-HT507 Microtubule-Associated Protein 1b 13 * 30 NC 0 0 45 I ˜2.9 0.43 25 I ˜1.9 0.13 17 * 7 NC 0 0 41 I ˜2.9 0.43 9 NC 0 0 1 * 8 NC 0 0 53 MI ˜2.7 0.42 15 NC 0 0 D21260 Human mRNA for KIAA0034 “gene,” complete cds 79 −1 NC 0 0 103 MI 2.3 0.42 7 NC 0 0 X84740 H. sapiens mRNA for DNA ligase III 90 −16 NC 0 0 −56 MD 2.7 0.42 48 NC 0 0 X15183 Human mRNA for 90-kDa heat-shock protein 1516 196 NC 0 0 827 I 1.5 0.41 −374 D 1.3 0.15 L18960 Human protein synthesis factor (elF-4C) “mRNA,” complete cds 46 19 NC 0 0 69 I 2.5 0.41 12 NC 0 0 L14837 Human tight junction (zonula occludens) protein ZO-1 “mRNA,” complete cds 29 −3 NC 0 0 49 I 2.7 0.4 18 NC 0 0 L20298 Homo sapiens transcription factor (CBFB) “mRNA,” 3′ end 75 9 NC 0 0 96 I 2.3 0.4 24 NC 0 0 M13934 RPS14 gene (ribosomal protein S14) extracted from Human ribosomal protein S14 “g 5922 −708 NC 0 0 −1680 D 1.4 0.4 −219 NC 0 0 M87338 Human replication factor “C,” 40-kDa subunit (A1) “mRNA,” complete cds 86 −26 NC 0 0 −53 D 2.6 0.4 −20 NC 0 0 L24804 Human (p23) “mRNA,” complete cds 149 41 NC 0 0 154 I 2 0.39 49 NC 0 0 L36844 Homo sapiens (clone p15INK4B/HA5) CDK inhibitory protein “mRNA,” complete cds 1 * 58 NC 0 0 51 MI ˜2.6 0.38 21 NC 0 0 M33374 Human cell adhesion protein (SQM1) “mRNA,” complete cds 192 46 NC 0 0 −105 MD 2.2 0.38 19 NC 0 0 U37547 Human IAP homolog B (MIHB) “mRNA,” complete cds 10 * 21 NC 0 0 44 I ˜2.7 0.38 4 NC 0 0 X59798 Human PRAD1 mRNA for cyclin 498 −118 NC 0 0 352 I 1.7 0.37 −161 D 1.5 0.16 M18000 Human ribosomal protein S17 “gene,” complete cds 5362 −839 NC 0 0 −1497 D 1.4 0.37 −914 D 1.2 0.14 J02621 Human non-histone chromosomal protein HMG-14 “mRNA,” complete cds — Also Rep 262 131 NC 0 0 225 I 1.9 0.37 −1 NC 0 0 U16307 Human glioma pathogenesis-related protein (GIIPR) “mRNA,” complete cds 12 * 2 NC 0 0 42 I ˜2.7 0.37 −5 NC 0 0 X65488 H. sapiens U21.1 mRNA 234 −46 NC 0 0 205 I 1.9 0.37 −25 NC 0 0 X98411 H. sapiens mRNA for myosin-IE 137 −43 NC 0 0 −78 D 2.3 0.37 −31 NC 0 0 D28476 Human mRNA for KIAA0045 “gene,” complete cds 51 −23 NC 0 0 69 I 2.3 0.36 −22 MD 1.7 0.1 D87716 Human mRNA for KIAA0007 “gene,” partial cds — Also Represents: D26488 18 * −9 NC 0 0 37 I ˜2.8 0.36 2 NC 0 0 M37190 Human ras inhibitor “mRNA,” 3′ end 39 * −15 NC 0 0 57 MI 2.5 0.36 1 NC 0 0 S42303 N-cadherin “[human,” umbilical vein endothelial “cells,” “mRNA,” 4132 nt] 48 20 NC 0 0 65 I 2.4 0.35 39 I 1.8 0.15 L09235 Human vacuolar ATPase (isoform VA68) “mRNA,” complete cds 2 * 10 NC 0 0 48 I ˜2.5 0.35 17 NC 0 0 U15008 Human SnRNP core protein Sm D2 “mRNA,” complete cds 3474 −245 NC 0 0 −1045 D 1.4 0.35 −504 NC 0 0 U90551 Human histone 2A-like protein (H2A/l) “mRNA,” complete cds 11 * 42 NC 0 0 41 I ˜2.6 0.35 17 NC 0 0 AB006782 Homo sapiens mRNA for galectin-9 “isoform,” complete cds. /gb = AB006782 /ntype = 134 * 0 NC 0 0 134 I 2 0.34 22 NC 0 0 G3748-HT401 Basic Transcription “Factor,” 44 Kda Subunit 124 −14 NC 0 0 125 I 2 0.34 −23 NC 0 0 U13219 Human forkhead protein FREAC-1 “mRNA,” complete cds 21 * −8 NC 0 0 36 I 2.7 0.34 −4 NC 0 0 M11058 Human 3-hydroxy-3-methylglutaryl coenzyme A reductase “mRNA,” complete cds 23 * −9 NC 0 0 38 I 2.6 0.33 −12 NC 0 0 U32114 Human caveolin-2 “mRNA,” complete cds 30 1 NC 0 0 45 I 2.5 0.33 −5 NC 0 0 U60325 Human DNA polymerase gamma “mRNA,” nuclear gene encoding mitochondrial “pro 94 −7 NC 0 0 −54 D 2.3 0.32 9 NC 0 0 U68019 Human mad protein homolog (hMAD-3) “mRNA,” complete cds 160 37 NC 0 0 144 I 1.9 0.32 28 NC 0 0 X05908 Human mRNA for lipocortin 120 7 NC 0 0 119 I 2 0.32 −69 NC 0 0 Z48512 H. sapiens XG mRNA (clone PEP6). /gb = Z48512 /ntype = RNA 52 * −2 NC 0 0 −39 MD ˜2.6 0.32 15 NC 0 0 D13645 Human mRNA for KIAA0020 “gene,” complete cds 16 * −15 NC 0 0 36 MI ˜2.6 0.31 8 NC 0 0 M27436 Human tissue factor “gene,” complete “cds,” with a Alu repetitive sequence in the 3′ 55 16 NC 0 0 67 I 2.2 0.31 −9 NC 0 0 U10492 Human Mox1 protein (MOX1) “mRNA,” complete cds 4 * 37 NC 0 0 45 I ˜2.4 0.31 26 NC 0 0 U49070 Human peptidyl-prolyl isomerase and essential mitotic regulator (PIN1) “mRNA,” com 245 −61 NC 0 0 −120 D 2 0.31 −19 NC 0 0 U52100 Human XMP “mRNA,” complete cds 93 −29 NC 0 0 −53 D 2.3 0.31 8 NC 0 0 X75091 H. sapiens mRNA for HLA-DR associated protein II (PHAPII) — Also Represents: M93 161 12 NC 0 0 143 I 1.9 0.31 −25 NC 0 0 Z48511 H. sapiens XG mRNA (clone PEP11) 51 * −14 NC 0 0 −39 D ˜2.5 0.31 −17 NC 0 0 1 * 6 NC 0 0 47 I ˜2.4 0.3 4 NC 0 0 U35835 Human DNA-PK “mRNA,” partial cds — Also Represents: U47077 42 −29 NC 0 0 54 MI 2.3 0.3 −19 NC 0 0 U82130 Human tumor susceptibility protein (TSG101) “mRNA,” complete cds 108 44 NC 0 0 105 I 2 0.3 3 NC 0 0 X66503 Human adenylosuccinate synthetase mRNA 27 * −1 NC 0 0 39 I 2.5 0.3 −6 NC 0 0 Z18951 H. sapiens mRNA for caveolin 353 −69 NC 0 0 246 I 1.7 0.3 −66 NC 0 0 U90552 Human butyrophilin (BTF5) “mRNA,” complete cds — Also Represents: U97502_ma1 51 50 NC 0 0 60 MI 2.2 0.29 63 MI 2.2 0.31 D00723 Human mRNA for hydrogen carrier “protein,” a component of an enzyme “complex,” 12 * 9 NC 0 0 37 I ˜2.5 0.29 10 NC 0 0 HG884-HT884 Oncogene “E6-Ap,” Papillomavirus — Also Represents: U84404 11 * 16 NC 0 0 37 I ˜2.4 0.29 10 NC 0 0 J03764 “Human,” plasminogen activator inhibitor-1 “gene,” exons 2 to 9 928 20 NC 0 0 471 I 1.5 0.29 −23 NC 0 0 M28215 Homo sapiens GTP-binding protein (RAB5) “mRNA,” complete cds 8 * 7 NC 0 0 40 MI ˜2.4 0.29 14 NC 0 0 U03272 Human fibrillin-2 “mRNA,” complete cds 14 * 7 NC 0 0 36 I ˜2.5 0.29 23 NC 0 0 U73936 Human Jagged 1 (HJ1) “mRNA,” complete cds 77 37 NC 0 0 82 I 2.1 0.29 12 NC 0 0 X16832 Human mRNA for cathepsin H (EC 3.4.22.16) 39 * −29 NC 0 0 50 I 2.3 0.29 42 NC 0 0 M83667 Human NF-IL6-beta protein “mRNA,” complete cds — Also Represents: S63168_ma1 24 6 NC 0 0 35 I 2.5 0.28 84 I 4.5 1.19 D38550 Human mRNA for KIAA0075 “gene,” partial cds 17 * −6 NC 0 0 33 I ˜2.5 0.28 14 I ˜1.6 0.06 8110 −377 NC 0 0 2128 I 1.3 0.28 1289 NC 0 0 D44466 Human mRNA for proteasome subunit “p112,” complete cds 237 −9 NC 0 0 179 I 1.8 0.28 −64 NC 0 0 K03195 Human (HepG2) glucose transporter gene “mRNA,” complete cds 201 160 NC 0 0 159 MI 1.8 0.28 159 NC 0 0 S77356 transcript ch21 = oligomycin sensitivity conferral protein oscp homolog “[human,” “RF1 241 5 NC 0 0 180 MI 1.7 0.28 27 NC 0 0 U01157 Human glucagon-like peptide-1 receptor mRNA with CA dinucleotide “repeat,” compl 21 * 5 NC 0 0 32 MI 2.5 0.28 −8 NC 0 0 U78524 Human Gu binding protein “mRNA,” partial cds. 64 * 9 NC 0 0 70 MI 2.1 0.28 26 NC 0 0 X70394 H. sapiens OZF mRNA 28 −8 NC 0 0 39 I 2.4 0.28 −2 NC 0 0 Z29083 H. sapiens 5T4 gene for 5T4 Oncofetal antigen 190 58 NC 0 0 153 I 1.8 0.28 7 NC 0 0 X96752 H. sapiens mRNA for L-3-hydroxyacyl-CoA dehydrogenase 17 * 14 NC 0 0 32 I ˜2.5 0.27 59 I ˜3.8 0.8 U09953 Human ribosomal protein L9 “mRNA,” complete cds 3077 45 NC 0 0 −843 D 1.4 0.27 −822 D 1.4 0.26 M11147 Human ferritin L chain “mRNA,” complete cds 5140 −601 NC 0 0 −1243 D 1.3 0.27 −1145 D 1.3 0.23 G4557-HT496 Small Nuclear Ribonucleoprotein “U1,” 1snrp 0 * 8 NC 0 0 45 I ˜2.3 0.27 −6 NC 0 0 M83216 Human aorta caldesmon “mRNA,” complete cds — “Also Represents: HG2743-HT392 6 * −9 NC 0 0 41 I ˜2.3 0.27 −3 NC 0 0 S67070 heat shock protein HSP72 homolog “[human,” thyroid associated ophthalmopathy “pa 43 * −54 NC 0 0 −62 MD ˜2.1 0.27 −1 NC 0 0 X00588 Human mRNA for precursor of epidermal growth factor receptor 14 * −4 NC 0 0 34 I ˜2.4 0.27 4 NC 0 0 X16560 Human COX VIIc gene for subunit VIIc of cytochrome c oxidase (EC 1.9.3.1) 1974 −3 NC 0 0 −594 MD 1.4 0.26 −495 D 1.3 0.18 U14973 Human ribosomal protein S29 “mRNA,” complete cds 5050 −470 NC 0 0 −1211 D 1.3 0.26 −971 D 1.2 0.17 M26730 Human mitochondrial ublquinone-binding protein “gene,” 5′ flank with an LTR-like sec 137 40 NC 0 0 115 MI 1.8 0.26 −50 D 1.6 0.11 D83777 Human mRNA for KIAA0193 “gene,” complete cds 82 −9 NC 0 0 80 I 2 0.26 −21 MD 1.3 0.04 M23254 Human Ca2-activated neutral protease large subunit (CANP) “mRNA,” complete cds 791 80 NC 0 0 394 I 1.5 0.26 −44 NC 0 0 M86400 Human phospholipase A2 “mRNA,” complete cds 836 93 NC 0 0 411 I 1.5 0.26 58 NC 0 0 S79873 h-lamp-2 = lysosome-associated membrane protein-2 {alternatively spliced} “[human,” 12 12 NC 0 0 35 I ˜2.4 0.26 3 NC 0 0 S82297 beta 2-microglubulin {11bp deleted between nucleotides 98-99} “[human,” colon canc 704 36 NC 0 0 362 I 1.5 0.26 −59 NC 0 0 U33920 Human clone lambda 5 semaphorin “mRNA,” complete cds −7 * 17 NC 0 0 51 MI ˜2.2 0.26 5 NC 0 0 U65579 Human mitochrondrial NADH dehydrogenase-ublquinone Fe—S protein “8,” 23 kDa su 220 35 NC 0 0 −103 MD 1.9 0.26 99 NC 0 0 U95740 362G6.2 gene extracted from Human chromosome 16p 13.1 BAC clone CIT987SK-36 4 * 22 NC 0 0 41 MI ˜2.3 0.26 16 NC 0 0 D83004 Human epidermoid carcinoma mRNA for ublquitin-conjugating enzyme E2 similar to 213 130 NC 0 0 153 I 1.7 0.25 41 MI 1.2 0.03 D87120 Human cancellous bone osteoblast mRNA for “GS3786,” complete cds 13 * −5 NC 0 0 34 I ˜2.3 0.25 1 NC 0 0 D89377 Human mRNA for “MSX-2,” complete cds — Also Represents: X69295 Same Unigen 48 2 NC 0 0 −31 D ˜2.4 0.25 −8 NC 0 0 M19961 Human cytochrome c oxidase subunit Vb (coxVb) “mRNA,” complete cds 1036 47 NC 0 0 −350 D 1.5 0.25 −91 NC 0 0 M59830 Human MHC class III HSP70-2 gene “(HLA),” complete cds 100 32 NC 0 0 90 MI 1.9 0.25 21 NC 0 0 U77413 Human O-linked GlcNAc transferase “mRNA,” complete cds. /gb = U77413 /ntype = RN 8 * −1 NC 0 0 38 MI ˜2.3 0.25 0 NC 0 0 X01060 Human mRNA for transferrin receptor 485 94 NC 0 0 277 I 1.6 0.25 26 NC 0 0 X62654 ME491 gene extracted from H. sapiens gene for Me491/CD63 antigen 1391 131 NC 0 0 −438 D 1.5 0.25 63 NC 0 0 Z31690 H. sapiens (HepG2) LAL mRNA for lysosomal acid lipase — “Also Represents: X76488 16 * 1 NC 0 0 32 I ˜2.4 0.25 −13 NC 0 0 M63573 Human secreted cyclophilin-like protein (SCYLP) “mRNA,” complete cds 2163 −384 NC 0 0 −603 D 1.4 0.24 −501 D 1.3 0.16 X96924 H. sapiens gene encoding mitochrondrial citrate transport protein 679 −140 NC 0 0 −247 MD 1.6 0.24 217 I 1.3 0.11 U00947 Human clone C4E 3.2 (CAC)n/(GTG)n repeat-containing mRNA — Also Represents: 860 83 NC 0 0 402 I 1.5 0.24 160 I 1.2 0.05 10469 −1403 NC 0 0 −1969 D 1.2 0.24 −1192 NC 0 0 HG429-HT429 B-Cell Growth Factor 1 159 26 NC 0 0 124 I 1.8 0.24 −63 NC 0 0 M25077 Human SS-A/Re ribonucleoprotein autoantigen 60 kd subunit “mRNA,” complete cds −18 * 20 NC 0 0 59 I ˜2.0 0.24 −1 NC 0 0 S74728 antiquitin = 26g turgor protein homolog “[human,” “kidney,” “mRNA,” 1809 nt] 67 0 NC 0 0 67 I 2 0.24 1 NC 0 0 U37426 Human kinesin-like spindle protein HKSP (HKSP) “mRNA,” complete cds 14 * −21 NC 0 0 33 I ˜2.3 0.24 −13 NC 0 0 X14684 Human mRNA for La protein C-terminal region — “Also Represents: X13697, M20328 65 −18 NC 0 0 64 I 2 0.24 −41 NC 0 0 Z80777 H. sapiens H2A/k gene −6 * 13 NC 0 0 49 I ˜2.1 0.24 5 NC 0 0 D14826 Human mRNA for hCREM (cyclic AMP-responsive element modulator) type 2 “prote 23 * 24 NC 0 0 31 I 2.3 0.23 19 I 1.8 0.11 20 * 12 NC 0 0 28 MI ˜2.4 0.23 9 NC 0 0 L29008 Human L-iditol-2 dehydrogenase “mRNA,” complete cds 139 39 NC 0 0 108 MI 1.8 0.23 49 NC 0 0 U40369 Human spermidine/spermine N1-acetyltransferase (SSAT) “gene,” complete cds 21 12 NC 0 0 29 I 2.4 0.23 3 NC 0 0 U57341 Human neurofilament triplet L protein “mRNA,” partial cds. /gb = U57341 /ntype = RNA 23 * 20 NC 0 0 30 MI 2.3 0.23 15 NC 0 0 U76189 Human EXTL3 “mRNA,” partial cds. /gb = U76189 /ntype = RNA 15 * −2 NC 0 0 31 I ˜2.3 0.23 −5 NC 0 0 M29064 Human hnRNP B1 protein mRNA 377 −77 NC 0 0 213 I 1.6 0.22 −174 D 1.9 0.32 G3936-HT420 Interleukin 9 Receptor (Gb:S71404) 45 * −15 NC 0 0 −32 MD ˜2.2 0.22 −39 NC 0 0 L19161 Human translation initiation factor elF-2 gamma subunit “mRNA,” complete cds 56 20 NC 0 0 55 I 2 0.22 −2 NC 0 0 M14113 Human coagulation factor VIII:C “mRNA,” complete cds 11 * −22 D ˜1.0 0 33 I ˜2.2 0.22 5 NC 0 0 S82024 SCG10 = neuron-specific growth-associated protein/stathmin homolog “[human,” “emb 12 * 8 NC 0 0 33 I ˜2.2 0.22 −4 NC 0 0 U67171 Human selenoprotein W (selW) “mRNA,” complete cds. /gb = U67171 /ntype = RNA 586 100 NC 0 0 −213 MD 1.6 0.22 −12 NC 0 0 7780 −799 NC 0 0 −1472 D 1.2 0.21 −223 NC 0 0 D78361 Human mRNA for omithine decarboxylase “antizyme,” ORF 1 and ORF 2 6151 −96 NC 0 0 −1256 D 1.3 0.21 −366 NC 0 0 G2981-HT312 “Epican,” Alt. Splice 1 — “Also Represents: HG2981-HT3934, HG2981-HT3931, HG29 408 113 NC 0 0 222 I 1.5 0.21 46 NC 0 0 L27706 Human chaperonin protein (Tcp20) gene complete cds 163 26 NC 0 0 114 I 1.7 0.21 −58 NC 0 0 M31520 Human ribosomal protein S24 mRNA — Also Represents: HG3214-HT3391 73 −23 NC 0 0 −38 D 2.1 0.21 −25 NC 0 0 M37197 Human CCAAT-box-binding factor (CBF) “mRNA,” complete cds 21 * 0 NC 0 0 27 MI 2.3 0.21 −19 NC 0 0 U09510 Human glycyl-tRNA synthetase “mRNA,” complete cds — Also Represents: U09587 445 66 NC 0 0 234 I 1.5 0.21 12 NC 0 0 U51990 Human hPrp18 “mRNA,” complete cds −3 * 12 NC 0 0 44 I ˜2.0 0.21 7 NC 0 0 U78027 L44L gene (L44-like ribosomal protein) extracted from Human Bruton's tyrosine kinas 39 * −22 NC 0 0 −56 D ˜2.0 0.21 6 NC 0 0 U94832 Human KH type splicing regulatory protein KSRP “mRNA,” complete cds. 336 137 NC 0 0 193 I 1.6 0.21 85 NC 0 0 Y08612 H. sapiens mRNA for Nup88 protein 105 34 NC 0 0 85 MI 1.8 0.21 23 NC 0 0 D31767 Human mRNA for KIAA0058 “gene,” complete cds 171 65 NC 0 0 115 I 1.7 0.2 71 MI 1.4 0.09 D13627 Human mRNA for KIAA0002 “gene,” complete cds 277 42 NC 0 0 162 I 1.6 0.2 −86 NC 0 0 D26018 Human mRNA for KIAA0039 “gene,” partial cds 12 * 20 NC 0 0 31 I ˜2.1 0.2 11 NC 0 0 D80005 Human mRNA for KIAA0183 “gene,” partial cds 111 −11 NC 0 0 86 I 1.8 0.2 22 NC 0 0 L05147 Human dual specificity phosphatase tyrosine/serine “mRNA,” complete cds 54 −7 NC 0 0 −29 D 2.2 0.2 −15 NC 0 0 L35546 Homo sapiens gamma-glutamylcysteine synthetase light subunit “mRNA,” complete 150 33 NC 0 0 107 MI 1.7 0.2 43 NC 0 0 U06698 Human neuronal kinesin heavy chain “mRNA,” complete cds 4 * 18 NC 0 0 38 I ˜2.1 0.2 15 NC 0 0 X66899 H. sapiens EWS mRNA 438 −74 NC 0 0 228 I 1.5 0.2 61 NC 0 0 Z70759 H. sapiens mitochondrial 16S rRNA gene (partial). /gb = Z70759 /ntype = RNA 6416 −979 NC 0 0 1445 MI 1.2 0.2 −699 NC 0 0 D31887 Human mRNA for KIAA0062 “gene,” partial cds 270 49 NC 0 0 156 I 1.6 0.19 45 NC 0 0 G2815-HT402 “Myosin,” Light “Chain,” “Alkali,” Smooth Muscle “(Gb:U02629),” Smooth “Muscle,” A 4909 −209 NC 0 0 −1007 D 1.3 0.19 −815 NC 0 0 L40357 Homo sapiens thyroid receptor interactor (TRIP7) “mRNA,” 3′ end of cds 8 * 13 NC 0 0 33 I ˜2.1 0.19 1 NC 0 0 M15661 Human ribosomal protein “mRNA,” complete cds 297 100 NC 0 0 168 I 1.6 0.19 56 NC 0 0 M31642 Human hypoxanthine phosphoribosyltransferase (HPRT) “mRNA,” complete cds 9 * −18 NC 0 0 33 I ˜2.1 0.19 −12 MD ˜1.0 0 U21090 Human DNA polymerase delta small subunit “mRNA,” complete cds 383 57 NC 0 0 −142 D 1.6 0.19 100 NC 0 0 U28833 Human Down syndrome critical region protein (DSCR1) “mRNA,” complete cds 12 * −2 NC 0 0 30 I ˜2.1 0.19 8 NC 0 0 U29607 Human methionine aminopeptidase “mRNA,” complete cds 3 * 1 NC 0 0 38 MI ˜2.0 0.19 5 NC 0 0 U56637 Human capping protein alpha subunit isoform 1 “mRNA,” complete cds 352 −102 NC 0 0 187 I 1.5 0.19 −190 NC 0 0 X51688 Human mRNA for cyclin A 121 43 NC 0 0 88 MI 1.7 0.19 7 NC 0 0 Z49254 H. sapiens L23-related mRNA 451 76 NC 0 0 212 I 1.5 0.18 212 I 1.5 0.18 Z19554 H. sapiens vimentin gene — Also Represents: M18895_cds2 Same Unigene Cluster a 7150 −730 NC 0 0 −1301 D 1.2 0.18 −954 MD 1.2 0.11 D86960 Human mRNA for KIAA0205 “gene,” complete cds −3 * 9 NC 0 0 42 I ˜2.0 0.18 27 I ˜1.2 0.02 Y00636 Human mRNA for lymphocyte function associated antigen-3 (LFA-3) 10 * 11 MI ˜1.1 0 31 I ˜2.1 0.18 13 I ˜1.2 0.01 D43951 Human mRNA for KIAA0099 “gene,” complete cds 26 * 0 NC 0 0 29 I 2.1 0.18 2 NC 0 0 D63878 Human mRNA for KIAA0158 “gene,” complete cds 265 −38 NC 0 0 146 I 1.6 0.18 −68 NC 0 0 D64015 Homo sapiens mRNA for T-cluster binding “protein,” complete cds. /gb = D64105 /ntyp 1 * 11 NC 0 0 39 I ˜2.0 0.18 12 NC 0 0 D78514 Human mRNA for ublquitin-conjugating “enzyme,” complete cds 23 * 22 NC 0 0 26 I 2.1 0.18 5 NC 0 0 D86978 Human mRNA for KIAA0225 “gene,” partial cds 85 14 NC 0 0 66 I 1.8 0.18 39 NC 0 0 L77886 Human protein tyrosine phosphatase “mRNA,” complete cds 85 0 NC 0 0 65 I 1.8 0.18 −23 NC 0 0 S82597 Description: UDP-GalNAc:polypeptide N-acetylgalactosaminyltransferase gene extra 0 * 9 NC 0 0 40 I ˜2.0 0.18 −1 NC 0 0 X95384 H. sapiens mRNA for unknown 14kDa protein 11 * −14 NC 0 0 30 I ˜2.1 0.18 −6 NC 0 0 D84361 Human mRNA for p52 and p64 isoforms of “N-Shc,” complete cds 37 * −39 NC 0 0 −49 D ˜1.8 0.17 −54 MD ˜1.8 0.18 7968 −1139 NC 0 0 −1340 D 1.2 0.17 −532 NC 0 0 D86967 Human mRNA for KIAA0212 “gene,” complete cds 50 * −6 NC 0 0 44 MI 1.9 0.17 8 NC 0 0 G3521-HT371 Ras-Related Protein Rap1b 81 27 NC 0 0 62 I 1.8 0.17 7 NC 0 0 K02268 Human enkephalin B (enkB) “gene,” 5′ flank and 13 * 13 NC 0 0 28 I ˜2.1 0.17 23 NC 0 0 L03532 Human M4 protein “mRNA,” complete cds 291 −35 NC 0 0 150 I 1.5 0.17 −48 NC 0 0 L05624 Homo sapiens MAP kinase kinase “mRNA,” complete cds — Also Represents: L11284 112 14 NC 0 0 78 I 1.7 0.17 −9 NC 0 0 L09209 Homo sapiens amyloid protein homologue “mRNA,” complete cds — Also Represents: 128 22 NC 0 0 86 MI 1.7 0.17 55 NC 0 0 L78440 Homo sapiens STAT4 “mRNA,” complete cds 17 * 21 NC 0 0 25 I ˜2.1 0.17 14 NC 0 0 M19283 Human cytoskeletal gamma-actin “gene,” complete cds 2495 −252 NC 0 0 −582 D 1.3 0.17 −305 NC 0 0 U28749 Human high-mobility group phosphoprotein isoform I-C (HMGIC) “mRNA,” complete 101 −51 NC 0 0 71 I 1.7 0.17 −42 NC 0 0 U73477 Human acidic nuclear phosphoprotein pp32 “mRNA,” complete cds — Also Represent 41 * 23 NC 0 0 37 I 1.9 0.17 −27 NC 0 0 U90913 Human clone 23665 mRNA sequence 366 151 NC 0 0 178 I 1.5 0.17 134 NC 0 0 X93499 H. sapiens mRNA for RAB7 protein 453 −35 NC 0 0 206 I 1.5 0.17 −25 NC 0 0 L35249 Homo sapiens vacuolar H+-ATPase Mr “56,000” subunit (HO57) “mRNA,” complete 156 106 NC 0 0 95 MI 1.6 0.16 204 I 2.3 0.59 D28423 Human mRNA for pre-mRNA splicing factor “SRp20,” 5′UTR (sequence from the 5′ca 1179 −127 NC 0 0 388 I 1.3 0.16 −429 D 1.6 0.31 D26067 Human mRNA for KIAA0033 “gene,” partial cds 19 * 10 NC 0 0 23 I ˜2.1 0.16 −3 NC 0 0 G3076-HT323 Heterogeneous Nuclear Ribonucleoprotein “K,” Alt. Splice 1 — Also Represents: X727 702 145 NC 0 0 277 I 1.4 0.16 8 NC 0 0 J00139 Human dihydrotolate reductase gene — “Also Represents: HG2846-HT2983, J00146 46 28 NC 0 0 41 I 1.9 0.16 33 NC 0 0 L05188 Homo sapiens small proline-rich protein 2 (SPRR2B) “gene,” complete cds 46 −11 NC 0 0 −24 D 2.1 0.16 −15 NC 0 0 U24266 Human pyrroline-5-carboxylate dehydrogenase (P5CDh) “mRNA,” long “form,” comp 1 * 21 NC 0 0 37 MI ˜1.9 0.16 19 NC 0 0 U29091 Human selenium-binding protein (hSBP) “mRNA,” complete cds. /gb = U29091 /ntype 36 * −30 NC 0 0 −50 D ˜1.8 0.16 −30 NC 0 0 U90915 Human clone 23600 cytochrome c oxidase subunit IV “mRNA,” complete cds 2579 −131 NC 0 0 −561 D 1.3 0.16 −309 NC 0 0 X89430 H. sapiens mRNA for methyl CpG binding protein 2 12 * 11 NC 0 0 29 I ˜2.0 0.16 −8 NC 0 0 X94703 H. sapiens rab28 mRNA 6 * 1 NC 0 0 33 I ˜1.9 0.16 −19 NC 0 0 D13413 Human mRNA for tumor-associated 120 kDa nuclear protein “p120,” partial cds(carb 5323 −575 NC 0 0 −937 D 1.2 0.15 −1368 D 1.3 0.31 J04173 Homo sapiens phosphoglycerate mutase (PGAM-B) “mRNA,” complete cds 1250 25 NC 0 0 390 I 1.3 0.15 409 I 1.3 0.16 AF007875 Homo sapiens dolichol monophosphate mannose synthase (DPM1) “mRNA,” partial 94 1 NC 0 0 65 I 1.7 0.15 −45 NC 0 0 D49489 Human mRNA for protein disulfide isomerase-related protein “P5,” complete cds 265 111 NC 0 0 135 1 1.5 0.15 43 NC 0 0 G3075-HT323 Focal Adhesion Kinase — Also Represents: L13616 25 −6 NC 0 0 25 MI 2 0.15 −10 NC 0 0 L14856 Human somatostatin receptor “gene,” complete cds 144 −42 NC 0 0 −60 MD 1.7 0.15 −35 NC 0 0 M14636 Human liver glycogen phosphorylase “mRNA,” complete cds 23 6 NC 0 0 23 I 2 0.15 5 NC 0 0 M31724 Human phosphotyrosyl-protein phosphatase (PTP-1B) “mRNA,” complete cds 74 * 5 NC 0 0 54 MI 1.7 0.15 34 NC 0 0 M67468 Human Fragile X mental retardation 1 FMR-1 “gene,” 3′ “end,” clones BC72 and BC2 1 * 8 NC 0 0 36 I ˜1.9 0.15 −2 NC 0 0 M69181 Human nonmuscle myosin heavy chain-B (MYH10) mRNA, partial cds. 80 −1 NC 0 0 57 I 1.7 0.15 18 NC 0 0 U68494 Human hbc647 mRNA sequence 35 * −2 NC 0 0 31 I 1.9 0.15 −21 NC 0 0 X00274 Human gene for HLA-DR alpha heavy chain a class II antigen (immune response ge 111 −27 NC 0 0 −48 D 1.8 0.15 31 NC 0 0 X97064 H. sapiens mRNA for Sec23A “isoform,” 2748bp 12 * 1 NC 0 0 28 I ˜2.0 0.15 3 NC 0 0 L14754 Human DNA-binding protein (SMBP2) “mRNA,” complete cds 3 * 31 NC 0 0 33 MI ˜1.8 0.14 32 I ˜1.8 0.13 D00762 Human mRNA for proteasome subunit HC8 199 42 NC 0 0 104 I 1.5 0.14 −83 NC 0 0 D28473 Human T-lymphocyte mRNA for isoleucyl-tRNA “synthetase,” complete cds — Also Re 451 110 NC 0 0 188 I 1.4 0.14 27 NC 0 0 G2743-HT284 Caldesmon “1,” Alt. Splice “4,” Non-Muscle — “Also Repesents: HG2743-HT2843, HG 24 * −8 NC 0 0 23 I 2 0.14 −13 NC 0 0 M15796 Human cyclin protein “gene,” complete cds 105 14 NC 0 0 68 I 1.6 0.14 41 NC 0 0 M86699 Human kinase (TTK) “mRNA,” complete cds 3 * 2 NC 0 0 34 MI ˜1.8 0.14 2 NC 0 0 M95787 Human 22 kDa smooth muscle protein (SM22) “mRNA,” complete cds 321 −44 NC 0 0 −110 D 1.5 0.14 −73 NC 0 0 U20530 Human bone phosphoprotein spp-24 precursor “mRNA,” complete cds. /gb = U20530 38 * 4 NC 0 0 −31 MD ˜1.9 0.14 −18 NC 0 0 X12953 Human rab2 “mRNA,” YPT1-related and member of ras family 109 −11 NC 0 0 67 I 1.6 0.14 −24 NC 0 0 Z47727 H. sapiens mRNA for RNA polymerase II subunit 193 −9 NC 0 0 103 I 1.5 0.14 −38 NC 0 0 U91327 Human chromosome 12p15 BAC clone CIT987SK-99D8 complete sequence. /gb = U9 689 −127 NC 0 0 239 I 1.3 0.13 −280 D 1.7 0.31 M29536 Human translational initiation factor 2 beta subunit (elF-2-beta) “mRNA,” complete cd 369 −23 NC 0 0 151 I 1.4 0.13 −166 D 1.8 0.3 L49380 Homo sapiens clone B4 transcription factor ZFM1 “mRNA,” complete cds 358 68 NC 0 0 151 I 1.4 0.13 206 I 1.6 0.22 L32976 Human protein kinase (MLK-3) “mRNA,” complete cds 44 * 25 NC 0 0 34 I 1.8 0.13 35 I 1.8 0.14 D26598 Human mRNA for proteasome subunit “HsC10-II,” complete cds 1869 90 NC 0 0 −398 D 1.3 0.13 173 NC 0 0 D89289 Human mRNA for “N-Acetyl-beta-D-glucosaminide,” complete cds 42 −3 NC 0 0 34 MI 1.8 0.13 3 NC 0 0 L40392 Homo sapiens (clone S164) “mRNA,” 3′ end of cds 15 * 11 NC 0 0 23 MI ˜1.9 0.13 −2 NC 0 0 M37075 Human embryonic/atrial myosin light chain (MLC-1-emb/A isoform) gene 35 * −26 NC 0 0 −39 D ˜1.7 0.13 −5 NC 0 0 M86667 H. sapiens NAP (nucleosome assembly protein) “mRNA,” complete cds 432 −75 NC 0 0 169 I 1.4 0.13 −106 NC 0 0 S79522 ublquitin carboxyl extension protein “[human,” “mRNA,” 540 nt] 2912 −257 NC 0 0 −554 D 1.2 0.13 −896 NC 0 0 U15128 Human “beta-1,2-N-acetylglucosaminyltransferase” II (MGAT2) “gene,” complete cds 50 −14 NC 0 0 −24 D 1.9 0.13 2 NC 0 0 U28963 Human Gps2 (GPS2) “mRNA,” complete cds 197 −20 NC 0 0 −72 D 1.6 0.13 −6 NC 0 0 U41668 Human deoxyguanosine kinase “mRNA,” complete cds 239 −39 NC 0 0 −83 D 1.5 0.13 −33 NC 0 0 U77718 Human desmosome associated protein pinin “mRNA,” complete cds 20 * −26 NC 0 0 20 I ˜2.0 0.13 −21 NC 0 0 X70944 H. sapiens mRNA for PTB-associated splicing factor — Also Represents: X16850 319 −38 NC 0 0 140 I 1.4 0.13 22 NC 0 0 Y10571 H. sapiens mRNA for dinG gene 0 * 14 NC 0 0 36 I ˜1.8 0.13 12 NC 0 0 D63874 Human mRNA for “HMG-1,” complete cds 711 −145 NC 0 0 236 I 1.3 0.12 −323 D 1.8 0.43 G1612-HT16 Macmarcks 273 32 NC 0 0 118 I 1.4 0.12 204 I 1.7 0.3 M84711 Human v-fos transformation effector protein “(Fte-1),” mRNA complete cds 4735 −403 NC 0 0 −757 D 1.2 0.12 −1075 D 1.3 0.23 L37127 Homo sapiens (clone mf.18) RNA polymerase II “mRNA,” complete cds 270 62 NC 0 0 119 I 1.4 0.12 149 MI 1.6 0.18 D85758 Human mRNA for human protein homologous to DROER “protein,” complete cds 481 38 NC 0 0 173 I 1.4 0.12 39 MI 1.1 0.01 AB000449 Human mRNA for “VRK1,” complete cds 13 * 42 NC 0 0 25 I ˜1.9 0.12 −5 NC 0 0 D29641 Human mRNA for KIAA0052 “gene,” partial cds 30 4 NC 0 0 25 MI 1.8 0.12 −11 NC 0 0 D78129 Human adult (34 year old) Male liver mRNA for squalene “epoxidase,” partial cds. /gb 56 0 NC 0 0 38 I 1.7 0.12 5 NC 0 0 G4518-HT492 Transcription Factor Btf3 Homolog (Gb:M90355) 40 −17 NC 0 0 30 MI 1.8 0.12 4 NC 0 0 J00314 Human beta-tubulin “gene,” clone m40 460 −12 NC 0 0 170 I 1.4 0.12 74 NC 0 0 L24774 Homo sapiens “delta3,” delta2-CoA-isomerase “mRNA,” 3′ end — “Also Represents: Z 217 3 NC 0 0 −74 MD 1.5 0.12 −22 NC 0 0 M93651 Human set “gene,” complete cds 416 59 NC 0 0 158 I 1.4 0.12 −60 NC 0 0 X07384 Human mRNA for GLI protein −10 * −20 NC 0 0 43 I ˜1.7 0.12 24 NC 0 0 X83703 H. sapiens mRNA for cytokine inducible nuclear protein 17 * 5 NC 0 0 21 MI ˜1.9 0.12 −14 NC 0 0 Y10511 H. sapiens mRNA for CD176 protein. /gb = Y10511 /ntype = RNA 34 −21 NC 0 0 −36 MD ˜1.7 0.12 −23 NC 0 0 Z35085 H. sapiens mRNA for unknown antigen — Also Represents: D86958 9 * 1 NC 0 0 27 I ˜1.8 0.12 4 NC 0 0 X15341 Human COX Via-L mRNA for cytochrome c oxidase liver-specific subunit Via (EC 1.9 2866 −55 NC 0 0 −516 MD 1.2 0.11 −556 D 1.2 0.13 Y07755 H. sapiens S100A2 “gene,” exon “1,” 2 and 3 1157 70 NC 0 0 −264 D 1.3 0.11 241 I 1.2 0.07 Z50853 H. sapiens mRNA for CLPP 397 3 NC 0 0 145 I 1.4 0.11 111 I 1.3 0.07 D14678 Human mRNA for kinesin-related “protein,” partial cds 7 * 26 NC 0 0 28 I ˜1.7 0.11 13 NC 0 0 D14878 Human mRNA for protein “D123,” complete cds 246 24 NC 0 0 104 I 1.4 0.11 −81 NC 0 0 L33881 Human protein kinase C lota “isoform,” complete cds 23 −2 NC 0 0 20 MI 1.8 0.11 −6 NC 0 0 L40388 Homo sapiens thyroid receptor interactor (TRIP15) “mRNA,” 5′ end of cds. /gb = L403 −7 * 18 I ˜1.0 0 39 I ˜1.6 0.11 2 NC 0 0 L40397 Homo sapiens (clone S311125) “mRNA,” 3′ end of cds 441 117 NC 0 0 158 I 1.4 0.11 −23 NC 0 0 L41939 Homo sapiens (clone FBK III 11c) protein-tyrosine kinase (DRT) “mRNA,” complete c 65 * 30 NC 0 0 40 MI 1.6 0.11 20 NC 0 0 M14123 neutral protease large subunit from Human endogenous retrovirus HERV-K10. /gb = M 35 * −22 NC 0 0 −28 D ˜1.7 0.11 4 NC 0 0 U09584 Human PL6 protein (PL6) “mRNA,” complete cds 133 −26 NC 0 0 −50 MD 1.6 0.11 −16 NC 0 0 X54941 H. sapiens ckshs1 mRNA for Cks1 protein homologue 814 94 NC 0 0 −198 MD 1.3 0.11 87 NC 0 0 X58528 Human PMP70 mRNA for a peroxisomal membrane protein — “Also Represents: M81 11 * 4 NC 0 0 25 I ˜1.8 0.11 −5 NC 0 0 Y13115 Homo sapiens mRNA for serine/threonine protein kinase SAK 43 * 10 NC 0 0 31 I 1.7 0.11 −14 NC 0 0 Y00486 adenine phosphoribosyltransferase (aprt) gene extracted from Human APRT gene to 842 10 NC 0 0 235 MI 1.3 0.1 246 I 1.3 0.11 D38122 Human mRNA for Fas “ligand,” complete cds 33 −16 NC 0 0 −30 D ˜1.7 0.1 −27 D ˜1.7 0.09 D13435 Human mRNA for PIG-F (phosphatidyl-inositol-glycan class “F),” complete cds 25 30 NC 0 0 19 I 1.8 0.1 14 NC 0 0 D25274 Human randomly sequenced mRNA 733 −7 NC 0 0 210 I 1.3 0.1 68 NC 0 0 D86979 Human mRNA for KIAA0226 “gene,” complete cds 114 23 NC 0 0 57 MI 1.5 0.1 −32 NC 0 0 L10678 Human profilin II “mRNA,” complete cds 588 74 NC 0 0 184 I 1.3 0.1 135 NC 0 0 M37755 Human pregnancy-specific beta-1-glycoprotein gene PSGGA 49 2 NC 0 0 31 I 1.6 0.1 8 NC 0 0 M86934 Human GS1 (protein of unknown function) “mRNA,” complete cds 95 −8 NC 0 0 −37 D 1.6 0.1 −19 NC 0 0 S78234 nuc2 homolog “[human,” “fibroblasts,” “mRNA,” 3320 nt] 25 * −3 NC 0 0 20 MI 1.8 0.1 −13 NC 0 0 X65633 H. sapiens ACTH-R gene for adrenocorticotropic hormone receptor −48 * 31 NC 0 0 77 I ˜1.5 0.1 68 MI ˜1.0 0 U46570 Human tetratricopeptide repeat protein (tpr1) “mRNA,” complete cds 450 −144 NC 0 0 −114 D 1.3 0.09 −191 D 1.7 0.29 D13315 Human mRNA for lactoyl glutathione lyase 504 7 NC 0 0 155 I 1.3 0.09 −176 D 1.5 0.19 D12620 Human mRNA for cytochrome P-450LTBV — Also Represents: U02388 −10 * 18 NC 0 0 41 I ˜1.5 0.09 41 I ˜1.6 0.09 Z93784 Homo sapiens DNA sequence from PAC 398C22 on chromosome 22q11.2-qter. Con 125 43 NC 0 0 59 MI 1.5 0.09 56 MI 1.4 0.08 L19183 Human MAC30 “mRNA,” 3′ end 35 14 NC 0 0 24 MI 1.7 0.09 17 I 1.5 0.05 D13643 Human mRNA for KIAA0018 “gene,” complete cds 227 64 NC 0 0 87 MI 1.4 0.09 70 NC 0 0 D86957 Human mRNA for KIAA0202 “gene,” partial cds 31 * −18 NC 0 0 22 I 1.7 0.09 3 NC 0 0 G3514-HT370 Tropomyosin “Tm30nm,” Cytoskeletal 910 119 NC 0 0 224 I 1.2 0.09 −27 NC 0 0 J04543 Human synexin “mRNA,” complete cds 136 15 NC 0 0 61 I 1.4 0.09 −15 NC 0 0 L08246 Human myeloid cell differentiation protein (MCL1) mRNA 210 −13 NC 0 0 85 I 1.4 0.09 −6 NC 0 0 L10338 Human sodium channel beta-1 subunit (SCN1B) “mRNA,” complete cds — “Also Repr 117 −14 NC 0 0 −40 MD 1.5 0.09 −14 NC 0 0 L13689 Human prot-oncogene (BMI-1) “mRNA,” complete cds 7 * −4 NC 0 0 26 MI ˜1.7 0.09 6 NC 0 0 L19779 Homo sapiens histone H2A.2 “mRNA,” complete cds 134 81 NC 0 0 60 MI 1.4 0.09 30 NC 0 0 M22632 Human mitochondrial aspartate aminotransferase “mRNA,” complete cds 517 81 NC 0 0 157 MI 1.3 0.09 59 NC 0 0 M76665 Human 11-beta-hydroxysteroid dehydrogenase (HSD11) gene 48 −2 NC 0 0 −20 D 1.7 0.09 −13 NC 0 0 M99439 Human transducin-like enhancer protein (TLE4) “mRNA,” 3′ end 26 * 2 NC 0 0 20 MI 1.8 0.09 2 NC 0 0 U04847 Human ini1 “mRNA,” complete cds 32 −19 NC 0 0 −37 D ˜1.6 0.09 −19 NC 0 0 U38175 Human HuR RNA binding protein (HuR) “mRNA,” complete cds 107 −34 NC 0 0 −38 D 1.6 0.09 −2 NC 0 0 U38276 Human semaphorin III family homolog “mRNA,” complete cds 128 * −18 NC 0 0 −43 MD 1.5 0.09 −17 NC 0 0 U38291 Human microtubute-associated protein 1a (MAP1A) genomic sequence 15 * −1 NC 0 0 20 I ˜1.7 0.09 20 NC 0 0 U40282 Human integrin-linked kinase (ILK) “mRNA,” complete cds 446 −56 NC 0 0 −114 D 1.3 0.09 20 NC 0 0 U90904 Human clone 23773 mRNA sequence 217 −54 NC 0 0 83 I 1.4 0.09 −49 NC 0 0 X53793 H. sapiens ADE2H1 mRNA showing homologies to SAICAR synthetase and AIR carb 334 16 NC 0 0 112 MI 1.3 0.09 −50 NC 0 0 X64330 H. sapiens mRNA for ATP-citrate lyase 828 161 NC 0 0 −184 D 1.3 0.09 149 NC 0 0 X80910 H. sapiens PPP1CB mRNA 14 * 0 NC 0 0 20 MI ˜1.7 0.09 −11 NC 0 0 X81889 H. sapiens mRNA for p0071 protein 0 * 10 NC 0 0 32 I ˜1.6 0.09 19 NC 0 0 X98743 H. sapiens mRNA for RNA helicase (Myc-regulated dead box protein) 88 * −28 NC 0 0 45 I 1.5 0.09 −5 NC 0 0 Y12393 H. sapiens mRNA for SRP1-like “protein,” partial — Also Represents: AB002533 45 −10 NC 0 0 28 MI 1.6 0.09 1 NC 0 0 Z24725 H. sapiens mitogen inducible gene “mig-2,” complete CDS 170 48 NC 0 0 72 I 1.4 0.09 52 NC 0 0 Z48501 H. sapiens mRNA for polyadenylate binding protein II. /gb = Z48501 /ntype = RNA — “Als 1105 −192 NC 0 0 260 I 1.2 0.09 −69 NC 0 0 D14812 Human mRNA for KIAA0026 “gene,” complete cds 695 −29 NC 0 0 183 I 1.3 0.08 −199 D 1.4 0.14 Y10659 H. sapiens IL-13Ra mRNA 10 * 8 NC 0 0 23 I ˜1.7 0.08 27 MI ˜1.9 0.13 L08132 Human voltage-dependent anion channel isoform 1 (VDAC) “mRNA,” complete cds 581 130 NC 0 0 161 I 1.3 0.08 159 I 1.3 0.08 G3971-HT424 Transcription Factor (Gb:L32162) 14 * −17 NC 0 0 20 MI ˜1.7 0.08 13 MI ˜1.3 0.03 U63825 Human hepatitis delta antigen interacting protein A (dipA) “mRNA,” complete cds 413 −31 NC 0 0 −100 MD 1.3 0.08 62 MI 1.2 0.03 D11094 Human mRNA for “MSS1,” complete cds 246 95 NC 0 0 85 MI 1.3 0.08 −40 NC 0 0 D84294 Human mRNA for “TPRDI,” complete cds 7 * −5 NC 0 0 25 I ˜1.6 0.08 3 NC 0 0 HG662-HT662 Epstein-Barr Virus Small Rna-Associated Protein 622 22 NC 0 0 159 I 1.3 0.08 −101 NC 0 0 L07493 Homo sapiens replication protein A 14 kDa subunit (RPA) “mRNA,” complete cds 54 * 4 I 1.1 0 30 I 1.6 0.08 4 I 1.1 0 L23808 Human metalloproteinase (HME) “mRNA,” complete cds −10 * 9 NC 0 0 40 I ˜1.5 0.08 17 I ˜1.0 0 M30496 Human ublquitin carboxyl-terminal hydrolase (PGP “9.5,” UCH-L3) isozyme L3 “mRN 102 −10 NC 0 0 46 MI 1.5 0.08 −33 NC 0 0 U24704 Human antisecretory factor-1 “mRNA,” complete cds 376 −22 NC 0 0 −95 D 1.3 0.08 −42 NC 0 0 U34252 Human gamma-aminobutyraldehyde dehydrogenase “mRNA,” complete cds 173 −22 NC 0 0 −54 D 1.5 0.08 −23 NC 0 0 U35451 Human heterochromatin protein p25 “mRNA,” complete cds 58 −3 NC 0 0 30 MI 1.5 0.08 −4 NC 0 0 U42412 Human 5′-AMP-activated protein “kinase,” gamma-1 subunit “mRNA,” complete cds 256 −13 NC 0 0 −70 D 1.4 0.08 21 NC 0 0 U73704 Homo sapiens 48 kDa FKBP-associated protein FAP48 “mRNA,” complete cds 17 * 1 NC 0 0 18 I ˜1.7 0.08 −3 NC 0 0 X04347 Human liver mRNA fragment DNA binding protein UPI homologue (C-terminus) — “Als 1526 −43 NC 0 0 313 I 1.2 0.08 −98 NC 0 0 X05360 Human CDC2 gene involved in cell cycle control 69 * 26 NC 0 0 35 I 1.5 0.08 −13 NC 0 0 X74987 H. sapiens mRNA for 2′-5′ oligoadenylate binding protein — Also Represents: X76388 7 * 21 NC 0 0 26 MI ˜1.6 0.08 3 NC 0 0 X98482 H. sapiens TNNT2 gene exon 11 /gb = X98482 /ntype = DNA /annot = mRNA 1432 105 NC 0 0 275 I 1.2 0.07 729 I 1.5 0.36 AB004884 Human mRNA for “PKU-alpha,” partial cds. /gb = AB004884 /ntype = RNA 62 −18 NC 0 0 30 MI 1.5 0.07 −36 D 2.3 0.26 104 49 NC 0 0 42 MI 1.4 0.07 −6 NC 0 0 D86550 Human mRNA for serine/threonine protein “kinase,” complete cds 40 * −23 NC 0 0 21 I 1.5 0.07 −5 NC 0 0 D87466 Human mRNA for KIAA0276 “gene,” partial cds 9 * 4 NC 0 0 23 I ˜1.6 0.07 −2 NC 0 0 G4716-HT515 Guanosine 5′-Monophosphate Synthase 401 −21 NC 0 0 115 MI 1.3 0.07 −25 NC 0 0 M19507 Human myeloperoxidase “mRNA,” complete cds 30 −34 NC 0 0 −33 D ˜1.5 0.07 −22 NC 0 0 S66793 X-arrestin = S-antigen homolog “[human,” “retina,” “mRNA,” 1314 nt] 31 * −25 NC 0 0 −20 D ˜1.6 0.07 −19 NC 0 0 U03105 Human B4-2 protein “mRNA,” complete cds 30 −2 NC 0 0 −25 D ˜1.5 0.07 −19 NC 0 0 U15172 Human Nip1 (NIP1) “mRNA,” complete cds 105 * −13 NC 0 0 −34 MD 1.5 0.07 −8 NC 0 0 U43077 Human CDC37 homolog “mRNA,” complete cds 746 −79 NC 0 0 −146 D 1.2 0.07 −5 NC 0 0 U46751 Human phosphotyrosine independent ligand p62 for the Lck SH2 domain “mRNA,” c 2103 −350 NC 0 0 −327 D 1.2 0.07 −275 NC 0 0 X52022 H. sapiens RNA for type VI collagen alpha3 chain 1509 −247 NC 0 0 291 I 1.2 0.07 −273 NC 0 0 M64716 Human ribosomal protein S25 “mRNA,” complete cds 3426 −580 NC 0 0 −419 D 1.1 0.06 −1074 D 1.5 0.38 M91670 Human ublquitin carrier protein (E2-EPF) “mRNA,” complete cds 903 213 NC 0 0 172 I 1.2 0.06 418 I 1.5 0.24 U87459 Human autoimmunogenic cancer/testis antigen NY-ESO-1 “mRNA,” complete cds 2224 −392 NC 0 0 −306 D 1.2 0.06 −413 D 1.2 0.11 8864 −200 NC 0 0 844 I 1.1 0.06 911 I 1.1 0.07 −14 * 34 NC 0 0 42 I ˜1.4 0.06 25 NC 0 0 124 48 NC 0 0 −37 D 1.4 0.06 −11 NC 0 0 D43950 Human mRNA for KIAA0098 “gene,” partial cds 1091 148 NC 0 0 203 I 1.2 0.06 −29 NC 0 0 G4102-HT437 N-Ethylmaleimide-Sensitive Factor 32 −3 NC 0 0 18 I 1.6 0.06 −5 NC 0 0 J04988 Human 90 kD heat shock protein “gene,” complete cds 2184 −335 NC 0 0 340 I 1.2 0.06 −692 NC 0 0 J05106 Human (clone pA3) protein disulfide isomerase related protein (ERp72) “mRNA,” com 4 * 20 NC 0 0 26 I ˜1.5 0.06 11 I ˜1.0 0 L05425 Homo sapiens autoantigen “mRNA,” complete cds 53 −34 NC 0 0 24 MI 1.4 0.06 −20 NC 0 0 L24203 Homo sapiens ataxia-telanglectasia group D-associated protein “mRNA,” complete c −2 * 30 NC 0 0 31 MI ˜1.4 0.06 5 NC 0 0 L42542 Human RLIP76 protein “mRNA,” complete cds 48 −13 NC 0 0 23 I 1.5 0.06 −18 NC 0 0 L49229 Homo sapiens retinoblastoma susceptibility protein (RB1) “gene,” with a 3 bp deletion 0 * 3 NC 0 0 29 MI ˜1.5 0.06 −6 NC 0 0 M74096 Human long chain acyl-CoA dehydrogenase (ACADL) “mRNA,” complete cds −2 * 3 NC 0 0 31 I ˜1.4 0.06 6 NC 0 0 S77763 nuclear factor erythroid 2 isoform t = basic leucine zipper protein (alternatively “spliced 27 * −2 NC 0 0 −42 D ˜1.4 0.06 −16 NC 0 0 U26424 Human Ste20-like kinase (MST2) “mRNA,” complete cds 8 * 2 NC 0 0 21 I ˜1.5 0.06 2 NC 0 0 U45982 Human G protein-coupled receptor GPR-9-6 “gene,” complete cds 81 * −19 NC 0 0 −25 MD 1.4 0.06 −20 NC 0 0 U50196 Human adenosine kinase “mRNA,” complete cds 98 12 NC 0 0 38 MI 1.4 0.06 −27 NC 0 0 U60205 Human methyl sterol oxidase (ERG25) “mRNA,” complete cds 29 * 8 NC 0 0 −31 D ˜1.5 0.06 22 NC 0 0 X66087 H. sapiens a-myb mRNA 5 * 7 NC 0 0 24 I ˜1.4 0.06 1 NC 0 0 X69962 H. sapiens FMR-1 mRNA — “Also Represents: S65791, L29074_ma2, L29074_ma4, L 5 * −1 NC 0 0 25 I ˜1.5 0.06 −1 NC 0 0 X77794 H. sapiens mRNA for cyclin G1 143 33 NC 0 0 48 I 1.3 0.06 −15 NC 0 0 X99459 H. sapiens mRNA for sigma 3B protein 226 50 NC 0 0 63 MI 1.3 0.05 126 I 1.6 0.17 J03827 Y box binding protein-1 (YB-1) mRNA 2530 −366 NC 0 0 317 I 1.1 0.05 −550 D 1.3 0.15 U70439 Human silver-stainable protein SSP29 “mRNA,” complete cds — Also Represents: Y0 1273 −262 NC 0 0 201 I 1.2 0.05 −271 MD 1.3 0.1 D63851 Human mRNA for uno-18 “homologue,” complete cds 61 11 NC 0 0 25 I 1.4 0.05 30 I 1.5 0.07 U52101 Human YMP “mRNA,” complete cds 1093 −65 NC 0 0 −154 D 1.2 0.05 198 I 1.2 0.06 D80012 Human mRNA for KIAA0190 “gene,” partial cds 106 21 NC 0 0 37 I 1.4 0.05 6 NC 0 0 HG110-HT110 Heterogeneous Nuclear Ribonucleoprotein A/B — Also Represents: U76713 1109 −1 NC 0 0 178 I 1.2 0.05 −153 NC 0 0 G2825-HT294 Het Transforming Gene 111 −14 NC 0 0 38 I 1.3 0.05 18 NC 0 0 L05424 CD44 gene (cell surface glycoprotein CD44) extracted from Human hyaluronate rece −2 * 4 NC 0 0 30 I ˜1.4 0.05 −2 NC 0 0 L36645 Homo sapiens receptor protein-tyrosine kinase (HEK8) “mRNA,” complete cds 13 * 11 NC 0 0 16 MI ˜1.5 0.05 1 NC 0 0 S67970 ZNF75 = KRAB zinc finger “[human,” lung “fibroblast,” “mRNA,” 1563 nt] −2 * 5 NC 0 0 29 I ˜1.4 0.05 −8 NC 0 0 U14747 Human visinin-like peptide 1 homolog “mRNA,” complete cds −16 * 10 NC 0 0 42 I ˜1.3 0.05 16 NC 0 0 U46025 Human translation initiation factor elF-3 p110 subunit “gene,” complete cds 1477 −171 NC 0 0 212 I 1.1 0.05 76 NC 0 0 U47621 Human nucleotar autoantigen No55 “mRNA,” complete cds 207 9 NC 0 0 −46 D 1.3 0.05 −5 NC 0 0 U53446 Human mitogen-responsive phosphoprotein DOC-2 “mRNA,” complete cds 51 −26 NC 0 0 −16 D 1.4 0.05 −23 NC 0 0 X03473 Human gene for histone H1(0) −7 * 22 I ˜1.0 0 34 I ˜1.4 0.05 19 NC 0 0 X87241 H. sapiens mRNA for hFat protein 96 −19 NC 0 0 34 I 1.4 0.05 41 NC 0 0 U79258 Human clone 23732 “mRNA,” partial cds. 2 * 2 NC 0 0 24 I ˜1.3 0.04 49 I ˜2.5 0.35 L08666 Homo sapiens porin (por) “mRNA,” complete cds and truncated cds 627 101 NC 0 0 110 MI 1.2 0.04 210 I 1.3 0.12 S81914 IEX-1 = radiation-inducible immediate-early gene “[human,” “placenta,” mRNA “Partial 644 0 NC 0 0 −104 D 1.2 0.04 −131 MD 1.3 0.07 Z23064 H. sapiens mRNA gene for hnRNP G protein 267 42 NC 0 0 56 I 1.2 0.04 75 MI 1.3 0.06 L13923 Homo sapiens fibrillin “mRNA,” complete cds 39 1 NC 0 0 16 MI 1.4 0.04 10 MI 1.3 0.02 D16815 Human mRNA for “EAR-1r,” complete cds 0 * −4 NC 0 0 26 I ˜1.3 0.04 1 NC 0 0 G1879-HT191 Ras-Like Protein Tc10 37 −25 NC 0 0 16 MI 1.4 0.04 −21 NC 0 0 L11284 Homosapiens ERK activator kinase (MEK1) mRNA 170 14 NC 0 0 41 MI 1.2 0.04 45 NC 0 0 L22009 Human hnRNP H “mRNA,” complete cds 212 −90 NC 0 0 51 I 1.2 0.04 −21 NC 0 0 L32179 Human arylacetamide deacetylase “mRNA,” complete cds 26 * −5 NC 0 0 −24 D ˜1.3 0.04 −12 NC 0 0 M61827 Human leukoslalin (CD43) “gene,” complete cds — “Also Represents: J04168, J04536 81 −7 NC 0 0 −21 D 1.4 0.04 −2 NC 0 0 U03494 Human transcription factor LSF “mRNA,” complete cds 27 * −12 NC 0 0 −22 MD ˜1.4 0.04 −17 NC 0 0 U38545 Human ARF-activated phosphatidylcholine-specific phospholipase D1a (hPLD1) “mR 25 * −31 NC 0 0 −40 D ˜1.3 0.04 −15 NC 0 0 U78525 Human eukaryotic translation initiation factor (elF3) “mRNA,” complete cds 736 −66 NC 0 0 113 I 1.2 0.04 −86 NC 0 0 X02761 Human mRNA for fibronectin (FN precursor) — Also Represents: HG3044-HT2527 1142 −177 NC 0 0 160 I 1.1 0.04 −152 NC 0 0 X80692 H. sapiens ERK3 mRNA 174 −62 NC 0 0 44 I 1.3 0.04 −49 NC 0 0 X93017 H. sapiens nox2 gene (exon 2). /gb = X93017 /ntype = DNA /annot = exon −10 * −1 NC 0 0 36 I ˜1.3 0.04 6 NC 0 0 M92934 Human connective tissue growth “factor,” complete cds 914 −174 NC 0 0 −112 D 1.1 0.03 −401 D 1.8 0.45 X97335 H. sapiens mRNA for kinase A anchor protein 25 * 14 NC 0 0 10 I 1.4 0.03 32 I 2.3 0.23 S58544 75 kda infertility-related sperm protein “[human,” “testis,” mRNA “Partial,” 2427 nt] 27 −11 NC 0 0 −20 D ˜1.3 0.03 −22 D ˜1.3 0.04 AF002020 Homo sapiens Niemann-Pick C disease protein (NPC1) “mRNA,” complete cds. /gb = 119 −7 NC 0 0 27 MI 1.2 0.03 24 NC 0 0 D42043 Human mRNA for KIAA0084 “gene,” partial cds 202 19 NC 0 0 41 MI 1.2 0.03 0 NC 0 0 D87443 Human mRNA for KIAA0254 “gene,” complete cds 34 −8 NC 0 0 12 I 1.3 0.03 −13 NC 0 0 M19645 Human 78 kdalton glucose-regulated protein (GRP78) “gene,” complete cds 312 10 NC 0 0 57 MI 1.2 0.03 −32 NC 0 0 U01038 Human pLK “mRNA,” complete cds 562 −55 NC 0 0 −78 D 1.2 0.03 28 NC 0 0 U52827 Human Crl-du-chat region “mRNA,” clone NIBB11 23 * −1 NC 0 0 10 I 1.4 0.03 −5 NC 0 0 U63542 Human putative FAP protein “mRNA,” partial cds 4 * 6 NC 0 0 22 MI ˜1.3 0.03 −9 NC 0 0 U78180 Human sodium channel 2 (hBNaC2) “mRNA,” alternatively “spliced,” complete cds −28 * 20 NC 0 0 52 MI ˜1.2 0.03 9 NC 0 0 U97018 Homo sapiens echinoderm microtubule-associated protein homolog HuEMAP “mRNA 1 * 22 NC 0 0 24 MI ˜1.3 0.03 31 NC 0 0 X05409 Human RNA for mitochondrial aldehyde dehydrogenase I ALDHT (EC 1.2.1.3) 152 23 NC 0 0 30 I 1.2 0.03 −68 NC 0 0 Y12856 H. sapiens mRNA for AMP-activated protein kinase “alpha-1,” partial. /gb = Y12856 /nt 26 * 9 NC 0 0 11 I 1.4 0.03 10 NC 0 0 U13991 Human TATA-binding protein associated factor 30 kDa subunit (tafll30) “mRNA,” com 419 39 NC 0 0 −51 D 1.1 0.02 208 I 1.5 0.19 X79882 H. sapiens lrp mRNA 185 * −22 NC 0 0 31 I 1.2 0.02 77 MI 1.4 0.09 U35048 Human TSC-22 protein “mRNA,” complete cds 138 0 NC 0 0 −20 D 1.2 0.02 −23 D 1.2 0.02 D79994 Human mRNA for KIAA0172 “gene,” partial cds 6 * 12 NC 0 0 18 I ˜1.2 0.02 8 NC 0 0 G1116-HT111 Proliferating-Cell Nucleolar “Antigen,” 120 Kda 210 11 NC 0 0 34 I 1.2 0.02 35 NC 0 0 G3627-HT383 Calcium “Channel,” “Voltage-Gated,” Beta 1 “Subunit,” L “Type,” Alt. Splice “2,” Skel −17 * 33 NC 0 0 40 MI ˜1.2 0.02 26 MI ˜1.0 0 L10910 Homo sapiens splicing factor (CC1.3) “mRNA,” complete cds 10 * 0 NC 0 0 15 MI ˜1.2 0.02 −3 NC 0 0 L36463 Homo sapiens ras inhibitor (Rin1) “mRNA,” complete cds 23 * −24 NC 0 0 −44 MD ˜1.2 0.02 −31 NC 0 0 M76125 Human tyrosine kinase receptor (axl) “mRNA,” complete cds — “Also Represents: HG 80 16 NC 0 0 19 I 1.2 0.02 14 NC 0 0 U17033 Human 180 kDa transmembrane PLA2 receptor “mRNA,” complete cds 1 * −11 NC 0 0 23 I ˜1.2 0.02 3 NC 0 0 U17989 Human nuclear autoantigen GS2NA “mRNA,” complete cds 2 * −6 NC 0 0 22 I ˜1.2 0.02 11 NC 0 0 U20938 Human lymphocyte dihydropyrimidine dehydrogenase “mRNA,” complete cds. 5 * 15 NC 0 0 20 I ˜1.2 0.02 5 NC 0 0 U28488 Human putative G protein-coupled receptor (AZ3B) “mRNA,” complete cds — Also Re −3 * 23 I ˜1.0 0 27 I ˜1.2 0.02 −2 NC 0 0 U37690 Human RNA polymerase II subunit (hsRPB10) “mRNA,” complete cds 1292 −37 NC 0 0 −97 D 1.1 0.02 103 NC 0 0 U46692 Human cystatin B “gene,” complete cds 342 −33 NC 0 0 −39 MD 1.1 0.02 1 NC 0 0 U81006 Human p76 “mRNA,” complete cds 133 −13 NC 0 0 24 I 1.2 0.02 −34 NC 0 0 U94831 Human multispanning membrane protein “mRNA,” complete cds. /gb = U94831 /ntype 277 32 NC 0 0 40 I 1.1 0.02 34 NC 0 0 X74330 H. sapiens mRNA for DNA primase (subunit p48) 83 * 14 NC 0 0 17 I 1.2 0.02 −2 NC 0 0 M76378 Human cysteine-rich protein (CRP) gene 1374 −33 NC 0 0 −76 D 1.1 0.01 338 I 1.2 0.1 D25538 Human mRNA for KIAA0037 “gene,” complete cds −4 * 6 NC 0 0 26 I ˜1.1 0.01 15 I ˜1.0 0 D86968 Human mRNA for KIAA0213 “gene,” partial cds 20 * −21 NC 0 0 4 I 1.2 0.01 9 NC 0 0 D86969 Human mRNA for KIAA0215 “gene,” complete cds 3 * 5 NC 0 0 19 I ˜1.1 0.01 7 NC 0 0 D89501 Human PBI “gene,” complete cds 21 −20 D ˜1.1 0 −26 D ˜1.1 0.01 −18 NC 0 0 G2480-HT257 Fmlp-Related Receptor I 23 * 6 NC 0 0 −10 D ˜1.2 0.01 1 NC 0 0 L06845 Human cysteinyl-tRNA synthetase “mRNA,” partial cds 406 −69 NC 0 0 −39 I 1.1 0.01 40 NC 0 0 L35035 Homo sapiens ribose 5-phosphate isomerase (RPI) mRNA 14 * −2 NC 0 0 8 I ˜1.1 0.01 3 I ˜1.0 0 L49173 Human OCP2 “gene,” partial cds. /gb = L49173 /ntype = DNA /annot = CDS 8 * 21 NC 0 0 14 I ˜1.1 0.01 36 NC 0 0 M55153 Human transglutaminase (TGase) “mRNA,” complete cds 186 −60 NC 0 0 −21 D 1.1 0.01 −55 NC 0 0 M96740 Human NSCL-2 gene sequence 0 * 7 NC 0 0 22 I ˜1.1 0.01 16 NC 0 0 S72869 H4(D10S170) = putative cytoskeletal protein “[human,” “thyroid,” “mRNA,” 3011 nt] −12 * 14 NC 0 0 34 I ˜1.1 0.01 26 I ˜1.0 0 U06863 Human follistatin-related protein precursor “mRNA,” complete cds 79 −10 NC 0 0 10 MI 1.1 0.01 −25 NC 0 0 U31342 Human nucleobindin gene 96 * 6 NC 0 0 11 MD 1.1 0.01 50 NC 0 0 U33052 Human “lipid-activated,” protein kinase PRK2 “mRNA,” complete cds — Also Represe −10 * 19 NC 0 0 32 I ˜1.1 0.01 14 NC 0 0 U70322 Human transportin (TRN) “mRNA,” complete cds. 121 −34 NC 0 0 18 I 1.2 0.01 −62 NC 0 0 X16416 Human c-abl mRNA encoding p150 protein 426 −13 NC 0 0 −31 I 1.1 0.01 −15 NC 0 0 X16901 Human mRNA for RAP30 subunit of transcription initiation factor RAP30/74 7 * 4 I ˜1.0 0 15 I ˜1.1 0.01 15 NC 0 0 X79781 H. sapiens ray mRNA 81 −10 NC 0 0 7 MI 1.1 0.01 −10 NC 0 0 Z24459 exon2A from H. sapiens MTCP1 “gene,” exons 2A to 7 (and joined mRNA). /gb = Z244 22 −23 NC 0 0 −27 D ˜1.1 0.01 −17 NC 0 0 X17025 Human homolog of yeast IPP isomerase 109 −54 NC 0 0 38 NC 0 0 −101 MD ˜5.5 1.67 X59892 H. sapiens mRNA for IFN-inducible gamma2 protein 874 76 NC 0 0 −65 NC 0 0 1242 I 2.4 1.63 X15940 Human mRNA for ribosomal protein L31 5905 −904 NC 0 0 153 NC 0 0 −2823 D 1.9 1.43 M24283 Human major group rhinovirus receptor (HRV) “mRNA,” complete cds −8 * 4 NC 0 0 −6 NC 0 0 94 I ˜4.3 1.18 X85237 H. sapiens mRNA for splicing factor SF3a120 52 * −3 NC 0 0 50 NC 0 0 141 I 3.7 1.18 U31628 Human interleukin-15 receptor alpha chain precursor (IL15RA) “mRNA,” complete cd 36 * 51 NC 0 0 76 NC 0 0 100 I 3.8 1.02 X84213 H. sapiens BAK mRNA for BCl-2 homologue — “Also Represents: U16811, U23765” 57 20 NC 0 0 25 NC 0 0 132 MI 3.3 0.95 M37435 Human macrophage-specific colony-stimulating factor (CSF-1) “mRNA,” complete cd 103 56 NC 0 0 94 NC 0 0 197 I 2.9 0.93 G3494-HT368 Nuclear Factor Ni-116 352 39 NC 0 0 92 NC 0 0 441 I 2.3 0.84 M15841 Human U2 small nuclear RNA-associated B″ antigen “mRNA,” complete cds 129 −26 NC 0 0 −9 NC 0 0 −92 D 3.4 0.84 Z31695 H. sapiens mRNA for 43 kDa inositol polyphosphate 5-phosphatase. 79 −42 NC 0 0 −29 NC 0 0 −61 MD ˜3.9 0.84 X56932 H. sapiens mRNA for 23 kD highly basic protein 11210 −2597 NC 0 0 −2411 NC 0 0 −3671 D 1.5 0.76 M58286 Homo sapiens tumor necrosis factor receptor “mRNA,” complete cds — “Also Represe 255 102 NC 0 0 59 NC 0 0 330 I 2.3 0.75 X97748 H. sapiens PTX3 gene promotor region. /gb = X97748 /ntype = DNA /annot = mRNA — Als 90 −26 NC 0 0 17 NC 0 0 −64 D 3.5 0.71 Z35278 H. sapiens PEBP2aC1 acute myeloid leukaemia mRNA 55 18 NC 0 0 26 NC 0 0 108 I 3 0.71 L40379 Homo sapiens thyroid receptor interactor (TRIP10) “mRNA,” 3′ end of cds 45 −2 NC 0 0 27 NC 0 0 88 I 3 0.64 U18009 Human chromosome 17q21 mRNA clone LF113 30 * 34 NC 0 0 22 NC 0 0 64 MI 3.1 0.6 U85011 Human preferentially expressed antigen of melanoma (PRAME) “mRNA,” complete c 37 * 35 NC 0 0 30 NC 0 0 74 I 3 0.6 L09604 Homo sapiens differentiation-dependent A4 protein “mRNA,” complete cds 1021 129 NC 0 0 157 NC 0 0 752 I 1.7 0.57 L33243 Homo sapiens polycystic kidney disease 1 protein (PKD1) “mRNA,” complete cds 60 −28 NC 0 0 −23 NC 0 0 −57 MD ˜3.0 0.53 M75126 Human hexokinase 1 (HK1) “mRNA,” complete cds 548 150 NC 0 0 272 NC 0 0 464 I 1.8 0.53 U30521 Human P311 HUM -3.1 “mRNA,” complete cds 46 23 NC 0 0 13 NC 0 0 80 MI 2.8 0.53 Z14093 H. sapiens mRNA for branched chain decarboxylase alpha subunit −51 * 77 NC 0 0 40 NC 0 0 102 MI ˜2.5 0.51 X95735 H. sapiens mRNA for zyxin 2 752 11 NC 0 0 −6 NC 0 0 560 I 1.7 0.5 D38073 Human mRNA for hRlf beta subunit (p102 “protein),” complete cds 143 36 NC 0 0 148 NC 0 0 169 MI 2.2 0.48 L29277 Homo sapiens DNA-binding protein (APRF) “mRNA,” complete cds 52 39 NC 0 0 37 NC 0 0 83 I 2.6 0.48 X90978 H. sapiens mRNA for an acute myeloid leukaemia protein (1793bp) 40 * 32 NC 0 0 21 NC 0 0 68 I 2.7 0.46 X97058 H. sapiens mRNA for P2Y6 receptor 5 * 42 NC 0 0 18 NC 0 0 52 I ˜2.9 0.46 D14530 Human homolog of yeast ribosomal protein “S28,” complete cds 3768 −302 NC 0 0 −687 NC 0 0 −1242 D 1.5 0.45 L20010 Human HCF1 gene related mRNA sequence 176 −25 NC 0 0 31 NC 0 0 189 I 2.1 0.45 J00220 IGHA1 gene extracted from Human Ig germline H-chain G-E-A region A: gamma-3 5′ −13 * 32 NC 0 0 18 NC 0 0 66 MI ˜2.6 0.44 M15205 Human thymidine kinase “gene,” complete “cds,” with clustered Alu repeats in the int 275 101 NC 0 0 37 NC 0 0 249 I 1.9 0.42 U58681 Human neurogenic basic-helix-loop-helix protein (NeuroD2) “gene,” complete cds. 56 * −47 NC 0 0 −34 NC 0 0 −45 D ˜2.8 0.41 X86779 H. sapiens mRNA for FAST kinase 171 67 NC 0 0 70 NC 0 0 173 I 2 0.4 U18934 Human receptor tyrosine kinase (DTK) “mRNA,” complete cds 145 139 NC 0 0 106 NC 0 0 151 I 2 0.39 X14787 Human mRNA for thrombospondin 303 −44 NC 0 0 −140 NC 0 0 −154 D 2 0.39 L17131 Human high mobility group protein (HMG-I(Y)) gene exons “1-8,” complete cds 1474 −78 NC 0 0 120 NC 0 0 754 I 1.5 0.37 X13546 put. HMG-17 protein gene extracted from Human HMG-17 gene for non-histone chro 2008 −98 NC 0 0 20 NC 0 0 −700 D 1.5 0.37 X74301 H. sapiens mRNA for MHC class II transactivator — Also Represents: U18259 −1 * 4 NC 0 0 −4 NC 0 0 52 I ˜2.6 0.37 X86691 H. sapiens mRNA for 218kD MI-2 protein 268 −84 NC 0 0 41 NC 0 0 −136 D 2 0.37 X77584 H. sapiens mRNA for ATL-derived factor/thiredoxin 1704 −216 NC 0 0 −229 NC 0 0 −605 D 1.6 0.36 G4704-HT514 Glial Growth Factor 2 54 −23 NC 0 0 −8 NC 0 0 −39 D ˜2.7 0.35 G3364-HT354 Ribosomal Protein L37 5500 −873 NC 0 0 −764 NC 0 0 −1433 D 1.4 0.33 K03515 Human neuroleukin “mRNA,” complete cds 613 56 NC 0 0 92 NC 0 0 385 I 1.6 0.33 U85265 Human down syndrome critical region 1 (DSCR1) “gene,” alternative exon 1 /gb = U85 −23 * 18 NC 0 0 26 I ˜1.0 0 68 I ˜2.3 0.33 L38941 Homo sapiens ribosomal protein L34 (RPL34) “mRNA,” complete cds 3050 −391 NC 0 0 −288 NC 0 0 −910 D 1.4 0.32 X16064 Human mRNA for translationally controlled tumor protein 4023 −647 NC 0 0 −443 NC 0 0 −1128 D 1.4 0.32 X73460 H. sapiens mRNA for ribosomal protein L3 6926 −1365 NC 0 0 −1676 NC 0 0 −1679 D 1.3 0.32 44 * 26 NC 0 0 21 NC 0 0 57 I 2.3 0.31 M80335 Homo sapiens protein kinase A catalytic subunit “mRNA,” 3′ end 89 −22 NC 0 0 −1 NC 0 0 −51 D 2.3 0.3 X51345 Human jun-B mRNA for JUN-B protein 187 27 NC 0 0 6 NC 0 0 155 I 1.8 0.3 G4319-HT458 Ribosomal Protein L5 2621 6 NC 0 0 22 NC 0 0 −772 D 1.4 0.29 J05614 Human proliferating cell nuclear antigen (PCNA) “gene,” promoter region. /gb = J0561 630 −125 NC 0 0 87 NC 0 0 −253 D 1.7 0.29 M23294 Human beta-hexosaminidase beta-subunit (HEXB) gene 130 −36 NC 0 0 8 NC 0 0 −68 MD 2.1 0.28 G2274-HT237 Rna Polymerase “II,” 14.5 Kda Subunit 314 94 NC 0 0 50 NC 0 0 210 I 1.7 0.27 L76200 Human guanylate kinase (GUK1) “mRNA,” complete cds 700 91 NC 0 0 3 NC 0 0 376 I 1.5 0.27 M88458 Human ELP-1 mRNA sequence 197 85 NC 0 0 142 NC 0 0 152 I 1.8 0.27 G1869-HT190 Male Enhanced Antigen 369 84 NC 0 0 101 NC 0 0 233 I 1.6 0.26 G2036-HT209 Stimulatory Gdp/Glp Exchange Protein For C-Ki-Ras P21 and Smg P21 34 49 NC 0 0 47 NC 0 0 43 I 2.3 0.26 M95809 Human basic transcription factor 62kD subunit “(BTF2),” complete cds 76 −5 NC 0 0 13 NC 0 0 −43 D 2.3 0.26 U37022 Human cyclin-dependent kinase 4 (CDK4) “gene,” complete cds 585 143 NC 0 0 26 NC 0 0 325 I 1.6 0.26 U60276 Human hASNA-I “mRNA,” complete cds 126 32 NC 0 0 −104 NC 0 0 109 MI 1.9 0.26 D21235 Human mRNA for HHR23A “protein,” complete cds 301 65 NC 0 0 82 NC 0 0 194 I 1.6 0.25 M37245 Human Ig superfamily cytotoxic T-lymphocyte-associated protein (CTLA-4) gene 67 −40 NC 0 0 −7 NC 0 0 −38 MD 2.3 0.25 U07424 Human putative tRNA synthetase-like protein “mRNA,” complete cds 851 103 NC 0 0 51 NC 0 0 405 I 1.5 0.25 U25182 Human antioxidant enzyme AOE37-2 “mRNA,” complete cds 141 74 NC 0 0 9 NC 0 0 116 MI 1.8 0.25 X04500 Human gene for prointerleukin 1 beta 482 121 NC 0 0 26 NC 0 0 −192 D 1.7 0.25 X17042 Human mRNA for hematopoetic proteoglycan core protein 751 82 NC 0 0 −190 NC 0 0 −274 D 1.6 0.25 Z35093 H. sapiens mRNA for SURF-1 432 99 NC 0 0 5 NC 0 0 253 I 1.6 0.25 D21853 Human mRNA for KIAA0111 “gene,” complete cds 448 100 NC 0 0 120 NC 0 0 255 I 1.6 0.24 J02902 Human protein phosphatase 2A regulatory subunit alpha-isotype (alpha-PR65) “mRN 344 47 NC 0 0 103 NC 0 0 211 I 1.6 0.24 J04823 Human cytochrome c oxidase subunit VIII (COX8) “mRNA,” complete cds 1696 55 NC 0 0 174 NC 0 0 653 I 1.4 0.24 L76191 Homo sapiens interleukin-1 receptor-associated kinase (IRAK) “mRNA,” complete cd 998 43 NC 0 0 21 NC 0 0 451 I 1.5 0.24 M22898 Human phosphoprotein p53 gene 47 33 NC 0 0 18 NC 0 0 51 I 2.1 0.24 Z49989 H. sapiens mRNA for smoothelin 153 * 16 NC 0 0 32 NC 0 0 119 MI 1.8 0.24 U24169 Human JTV-1 (JTV-1) “mRNA,” complete cds 292 94 NC 0 0 64 NC 0 0 184 I 1.6 0.23 4000 471 NC 0 0 585 NC 0 0 1112 I 1.3 0.22 D79205 Human mRNA for ribosomal protein “L39,” complete cds 3136 −198 NC 0 0 −467 NC 0 0 −767 D 1.3 0.22 J03592 Human ADP/ATP translocase “mRNA,” 3′ “end,” clone pHAT8 2289 255 NC 0 0 234 NC 0 0 763 I 1.3 0.22 M81695 H. sapiens leukocyte adhesion glycoprotein “p150,95” “mRNA,” complete cds — Also R 14 * 17 NC 0 0 21 NC 0 0 31 I ˜2.3 0.22 S65738 actin depolymerizing factor “[human,” fetal “brain,” “mRNA,” 1452 nt] 850 −3 NC 0 0 142 NC 0 0 −282 D 1.5 0.22 Z12830 H. sapiens mRNA for SSR alpha subunit 39 27 NC 0 0 26 NC 0 0 43 MI 2.1 0.22 U14603 Human protein-tyrosine phosphatase (HU-PP-1) “mRNA,” partial sequence 279 −71 NC 0 0 37 NC 0 0 −116 D 1.7 0.21 X64364 H. sapiens mRNA for M6 antigen 645 220 NC 0 0 79 NC 0 0 305 I 1.5 0.21 Z37986 H. sapiens mRNA for phenylalkylamine binding protein 402 104 NC 0 0 −9 NC 0 0 216 I 1.5 0.21 G4318-HT458 Llm-Domain Transcription Factor Llm-1 — Also Represents: U14755 56 * −24 NC 0 0 −7 NC 0 0 −30 D 2.2 0.2 J03589 Human ublquitin-like protein (GdX) “gene,” complete cds 65 20 NC 0 0 25 NC 0 0 59 MI 1.9 0.2 L16842 Human ublquinol cytochrome-c reductase core I protein “mRNA,” complete cds 1010 18 NC 0 0 −4 NC 0 0 404 I 1.4 0.2 L25080 Human GTP-binding protein (rhoA) “mRNA,” complete cds 1151 121 NC 0 0 49 NC 0 0 442 I 1.4 0.2 M34338 Human spermidine synthase “mRNA,” complete cds — Also Represents: M64231_ma 802 100 NC 0 0 24 NC 0 0 343 I 1.4 0.2 M94046 Human zinc finger protein (MAZ) mRNA 583 30 NC 0 0 −34 NC 0 0 278 I 1.5 0.2 U77846 Human elastin “gene,” partial cds and partial 3′UTR — “Also Represents: HG2994-HT 13 * 30 NC 0 0 32 NC 0 0 31 I ˜2.2 0.2 G4638-HT505 Spliceosomal Protein Sap 49 289 36 NC 0 0 114 NC 0 0 165 I 1.6 0.19 L19871 Human activating transcription factor 3 (ATF3) “mRNA,” complete cds 16 * 3 NC 0 0 4 NC 0 0 28 I ˜2.2 0.19 M16279 Human MIC2 “mRNA,” complete cds 437 54 NC 0 0 31 NC 0 0 218 I 1.5 0.19 U16031 Human transcription factor IL-4 Stat “mRNA,” complete cds 29 * 16 NC 0 0 15 NC 0 0 32 MI 2.1 0.19 U30255 Human phosphogluconate dehydrogenase (hPGDH) “gene,” complete cds 264 74 NC 0 0 79 NC 0 0 151 I 1.6 0.19 U52112 RbP gene (renin-binding protein) extracted from Human Xq28 genomic DNA in the re 88 −46 NC 0 0 −37 NC 0 0 −44 MD 2 0.19 U57099 Human APEG-1 “mRNA,” complete cds 15 * 18 NC 0 0 12 NC 0 0 28 I ˜2.2 0.19 U66469 Human cell growth regulator CGR19 “mRNA,” complete cds 75 −14 NC 0 0 −31 NC 0 0 −38 D 2 0.19 X67951 H. sapiens mRNA for proliferation-associated gene (pag) 2638 −138 NC 0 0 −74 NC 0 0 −636 D 1.3 0.19 Z46632 H. sapiens HSPDE4C1 gene for “3′,5′-cyclic” AMP phosphodiesterase 14 * 31 NC 0 0 39 NC 0 0 29 MD ˜2.1 0.19 D00017 Human lipocortin II mRNA 3431 −148 NC 0 0 −249 NC 0 0 −757 D 1.3 0.18 L21936 Human succinate dehydrogenase flavoprotein subunit (SDH) “mRNA,” complete cds 282 62 NC 0 0 85 NC 0 0 157 I 1.6 0.18 U28386 Human nuclear localization sequence receptor hSRP1 alpha “mRNA,” complete cds 296 135 NC 0 0 145 NC 0 0 163 I 1.5 0.18 X03342 Human mRNA for ribosomal protein L32 7474 −365 NC 0 0 −304 NC 0 0 −1339 D 1.2 0.18 D13641 Human mRNA for KIAA0016 “gene,” complete cds 217 −15 NC 0 0 101 NC 0 0 −86 D 1.7 0.17 J04182 Homo sapiens lysosomal membrane glycoprotein-1 (LAMP1) “mRNA,” complete cds 572 60 NC 0 0 16 NC 0 0 243 I 1.4 0.17 M92843 H. sapiens zinc finger transcriptional regulator “mRNA,” complete cds — “Also Represe 26 15 NC 0 0 12 NC 0 0 28 MI 2.1 0.17 U57342 Human myelodysplasia/myeloid leukemia factor 2 (MLF2) “mRNA,” complete cds 612 56 NC 0 0 150 NC 0 0 260 I 1.4 0.17 U79257 Human clone 23932 mRNA sequence 1 * 11 NC 0 0 −11 NC 0 0 38 I ˜1.9 0.17 X69391 H. sapiens mRNA for ribosomal protein L6 4078 42 NC 0 0 −768 NC 0 0 −825 D 1.3 0.17 Y09022 H. sapiens mRNA for Not56-like protein 440 28 NC 0 0 34 NC 0 0 208 I 1.5 0.17 D85433 Human MURR1 “mRNA,” sequence. /gb = D85433 /ntype = RNA 35 * 3 NC 0 0 15 NC 0 0 32 I 1.9 0.16 J04031 Human methylenetetrahydrofolate dehydrogenase-methenyltetrahydrofolate cyclohy 137 34 NC 0 0 46 NC 0 0 85 I 1.6 0.16 L26339 Human autoantigen “mRNA,” complete cds 67 * 2 NC 0 0 0 NC 0 0 53 MI 1.8 0.16 M96995 Homo sapiens epidermal growth factor receptor-binding protein GRB2 (EGFRBP-GR 286 −40 NC 0 0 −51 NC 0 0 −106 D 1.6 0.16 U96113 Homo sapiens Nedd-4-like ublquitin-protein ligase WWP1 “mRNA,” partial cds. /gb = U 67 −35 NC 0 0 −38 NC 0 0 −32 MD 1.9 0.16 X06956 Human HALPHA44 gene for “alpha-tubulin,” exons 3-Jan 723 97 NC 0 0 −41 NC 0 0 278 I 1.4 0.16 X13293 Human mRNA for B-myb gene 173 * 41 NC 0 0 15 NC 0 0 101 MI 1.6 0.16 X01420 H. sapiens mRNA for hHKb1 protein 3070 −530 NC 0 0 995 NC 0 0 −651 D 1.3 0.16 X95586 H. sapiens MB1 gene 1294 116 NC 0 0 −95 NC 0 0 418 I 1.3 0.16 Z49105 H. sapiens HO21 mRNA 346 −76 NC 0 0 −24 NC 0 0 −122 MD 1.5 0.16 D13720 Human mRNA for “LYK,” complete cds — Also Represents: L10717 7 * 15 NC 0 0 22 NC 0 0 31 I ˜1.9 0.15 L09260 Human (chromosome 3p25) membrane protein mRNA 268 96 NC 0 0 26 NC 0 0 165 I 1.4 0.15 U03735 Human MAGE-3 antigen (MAGE-3) “gene,” complete cds 731 −157 NC 0 0 9 NC 0 0 −214 D 1.4 0.15 U12595 Human tumor necrosis factor type 1 receptor associated protein (TRAP1) “mRNA,” p 349 65 NC 0 0 −28 NC 0 0 162 I 1.5 0.15 U18300 Human damage-specific DNA binding protein p48 subunit (DDB2) “mRNA,” complete 128 31 NC 0 0 35 NC 0 0 81 I 1.6 0.15 U28686 Human putative RNA binding protein RNPL “mRNA,” complete cds 137 116 NC 0 0 112 NC 0 0 83 I 1.6 0.15 U83461 Human putative copper uptake protein (hCTR2) “mRNA,” complete cds. /gb = U83461 34 * 16 NC 0 0 3 NC 0 0 31 I 1.9 0.15 X59434 Human rohu mRNA for rhodanese 121 * 12 NC 0 0 4 NC 0 0 77 I 1.6 0.15 X76057 H. sapiens PMI1 mRNA for phosphomannose isomerase 81 6 I 1.1 0 55 NC 0 0 58 I 1.7 0.15 36 * −35 NC 0 0 −44 NC 0 0 −41 D ˜1.8 0.14 K02574 Human purine nucleoside phosphorylase (PNP) “mRNA,” complete cds 437 99 NC 0 0 38 NC 0 0 181 I 1.4 0.14 L11285 Homosapiens ERK activator kinase (MEK2) mRNA 330 38 NC 0 0 22 NC 0 0 150 MI 1.5 0.14 M19483 Human ATP synthase beta subunit gene 1639 107 NC 0 0 93 NC 0 0 461 I 1.3 0.14 S81003 L-UBC = ublquitin conjugating enzyme “[human,” odontogenic “keratocysts,” mRNA “R 344 96 NC 0 0 122 NC 0 0 156 MI 1.5 0.14 U01923 Human BTK region clone ftp-3 mRNA 38 −17 NC 0 0 3 NC 0 0 −28 D ˜1.9 0.14 U52427 Human RNA polymerase II seventh subunit (rpb-7) “gene,” complete cds. 308 96 NC 0 0 4 NC 0 0 142 MI 1.5 0.14 U58048 Human metallopeptidase PRSM1 “mRNA,” complete cds 170 26 NC 0 0 29 NC 0 0 92 MI 1.5 0.14 X78338 Synthetic adenovirus transformed human retina cell “line,” MRP mRNA 39 13 NC 0 0 18 NC 0 0 33 MI 1.8 0.14 X98261 H. sapiens mRNA for M-phase “phosphoprotein,” mpp5 107 * 11 NC 0 0 −49 NC 0 0 67 MI 1.6 0.14 Y11681 Homo sapiens mRNA for mitochondrial ribosomal protein S12. /gb = Y11681 /ntype = R 704 21 NC 0 0 57 NC 0 0 250 I 1.4 0.14 Z37166 H. sapiens BAT1 mRNA for nuclear RNA helicase (DEAD family) 1427 −91 NC 0 0 −80 NC 0 0 409 I 1.3 0.14 D16105 Human mRNA for leukocyte tyrosine “kinase,” complete cds 218 37 NC 0 0 −77 NC 0 0 105 MI 1.5 0.13 G1804-HT182 Ornithine Aminotransferase-Like 3 28 * −12 NC 0 0 5 NC 0 0 26 MI 1.9 0.13 J04809 Human cytosolic adenylate kinase (AK1) “gene,” complete cds 35 * 36 NC 0 0 29 NC 0 0 29 MI 1.8 0.13 M16750 Human plm-1 oncogene “mRNA,” complete cds — “Also Represents: M27903, M2477 10 * 2 NC 0 0 26 NC 0 0 27 I ˜1.9 0.13 U01833 Human nucleotide-binding protein “mRNA,” complete cds 80 8 NC 0 0 4 NC 0 0 52 MI 1.7 0.13 X56468 Human mRNA for 14.3.3 “protein,” a protein kinase regulator 1773 −18 NC 0 0 −490 NC 0 0 −387 D 1.3 0.13 D25539 Human mRNA for KIAA0040 “gene,” complete cds 37 * −36 NC 0 0 −7 NC 0 0 −24 MD ˜1.9 0.12 D86965 Human mRNA for KIAA0210 “gene,” complete cds 115 −11 NC 0 0 −9 NC 0 0 −45 MD 1.6 0.12 G1614-HT161 Protein Phosphatase “1,” Alpha Catalytic Subunit 738 144 NC 0 0 47 NC 0 0 240 MI 1.3 0.12 G2999-HT475 Thyroid “Peroxidase,” Alt. Splice 2 — Also Represents: M25715 36 −14 NC 0 0 −23 NC 0 0 −25 D ˜1.8 0.12 G3991-HT426 Cpg-Enriched “Dna,” Clone E18 398 146 NC 0 0 148 NC 0 0 152 I 1.4 0.12 J04444 Human cytochrome c-1 “gene,” complete cds 1004 45 NC 0 0 −61 NC 0 0 291 I 1.3 0.12 L08096 Human CD27 ligand mRNA, complete cds. — Also Represents: HG903-HT903 97 46 NC 0 0 47 NC 0 0 59 MI 1.6 0.12 M61832 Human S-adenosythomocysteine hydrolase (AHCY) “mRNA,” complete cds — Also Re 573 89 NC 0 0 60 NC 0 0 201 I 1.4 0.12 M62762 Human vacuolar H+ ATPase proton channel subunit “mRNA,” complete cds 771 88 NC 0 0 111 NC 0 0 246 I 1.3 0.12 U39412 Human platelet alpha SNAP “mRNA,” complete cds 55 * 31 NC 0 0 19 NC 0 0 38 I 1.7 0.12 U51586 Human slah binding protein 1 (SlahBP1) “mRNA,” partial cds. 491 105 NC 0 0 13 NC 0 0 175 I 1.4 0.12 X15729 Human mRNA for nuclear p68 protein — Also Represents: X52104 480 −23 NC 0 0 141 NC 0 0 −140 D 1.4 0.12 X53002 Human mRNA for integrin beta-5 subunit — Also Represents: J05633 462 −131 NC 0 0 −12 NC 0 0 −136 D 1.4 0.12 X53331 Human mRNA for matrix Gla protein 78 39 NC 0 0 −38 NC 0 0 50 MI 1.6 0.12 X81003 H. sapiens HCG V mRNA 302 61 NC 0 0 −56 NC 0 0 130 I 1.4 0.12 Z17227 H. sapiens mRNA for transmenbrane receptor protein 46 * 19 NC 0 0 7 NC 0 0 34 MI 1.7 0.12 Z36714 H. sapiens mRNA for cyclin F 129 * 4 NC 0 0 −36 NC 0 0 72 MI 1.6 0.12 AC002115 F25451_2 gene extracted from Human DNA from overlapping chromosome 19 cosm 99 −22 NC 0 0 −22 NC 0 0 −39 MD 1.7 0.11 D21851 Human mRNA for KIAA0028 “gene,” partial cds 30 11 NC 0 0 4 NC 0 0 24 I 1.8 0.11 G3039-HT320 Adp-Ribosylation-Like Factor 418 20 NC 0 0 −214 NC 0 0 151 I 1.4 0.11 J04794 Human aldehyde reductase “mRNA,” complete cds 319 55 NC 0 0 −7 NC 0 0 129 MI 1.4 0.11 L38935 Homo sapiens GT212 mRNA 39 * −8 NC 0 0 17 NC 0 0 −19 D 1.9 0.11 M28213 Homo sapiens GTP-binding protein (RAB2) “mRNA,” complete cds — Also Represents 117 −5 NC 0 0 52 NC 0 0 −45 D 1.6 0.11 M64098 Human high density lipoprotein binding protein (HBP) “mRNA,” complete cds 299 −128 NC 0 0 −6 NC 0 0 −93 MD 1.5 0.11 U10117 Human endothelial-monocyte activating polypeptide II “mRNA,” complete cds 76 2 NC 0 0 1 NC 0 0 −32 D 1.7 0.11 U59877 Human low-Mr GTP-binding protein (RAB31) “mRNA,” complete cds — Also Represen 159 −43 NC 0 0 58 NC 0 0 −57 MD 1.6 0.11 U91985 Human DNA fragmentation factor-45 “mRNA,” complete cds 114 * 15 NC 0 0 35 NC 0 0 61 I 1.5 0.11 X13839 Human mRNA for vascular smooth muscle alpha-actin 208 36 NC 0 0 17 NC 0 0 95 MI 1.5 0.11 AF009368 Homo sapiens Luman “mRNA,” complete cds. /gb = AF009368 /ntype = RNA 198 55 NC 0 0 −2 NC 0 0 85 MI 1.4 0.1 D21261 Human mRNA for KIAA0120 “gene,” complete cds 2203 −128 NC 0 0 −2 NC 0 0 454 I 1.2 0.1 D78275 Human mRNA for proteasome subunit “p42,” complete cds 131 54 NC 0 0 78 NC 0 0 −46 MD 1.5 0.1 L16464 Human ETS oncogene (PEP1) “mRNA,” complete cds 34 −6 NC 0 0 −5 NC 0 0 −26 MD ˜1.7 0.1 M25164 Human thyrotropin beta subunit gene 20 * 25 NC 0 0 36 NC 0 0 18 MI 1.9 0.1 U12897 Human non-translated mRNA sequence 35 −20 NC 0 0 −15 NC 0 0 −22 D ˜1.7 0.1 X74331 H. sapiens mRNA for DNA primase (subunit p58) 62 47 NC 0 0 7 NC 0 0 38 MI 1.6 0.1 X96698 H. sapiens mRNA for D1075-like gene 118 10 NC 0 0 −10 NC 0 0 60 I 1.5 0.1 D64142 Human mRNA for histone “Hix,” complete cds 646 137 NC 0 0 75 NC 0 0 184 I 1.3 0.09 HG415-HT415 “Lectin,” “Galactoside-Binding,” “Soluble,” 2 23 * 4 NC 0 0 3 NC 0 0 18 I 1.8 0.09 J03779 Human common acute lymphoblastic leukemia antigen (CALLA) “mRNA,” complete c 99 −26 NC 0 0 6 NC 0 0 −36 D 1.6 0.09 L02326 Homo sapiens (clone Hu lambda-17) lambda-like “gene,” complete cds 30 * 27 NC 0 0 3 NC 0 0 −51 D ˜1.5 0.09 L33842 Homo sapiens (clone FFE-7) type II inosine monophosphate dehydrogenase (IMPDH 1773 −212 NC 0 0 −274 NC 0 0 375 I 1.2 0.09 L43631 Homo sapiens scaffold attachment factor (SAF-B) “gene,” partial cds 116 8 NC 0 0 73 NC 0 0 56 MI 1.5 0.09 M31013 Human nonmuscle myosin heavy chain (NMHC) “mRNA,” 3′ end 652 −106 NC 0 0 119 NC 0 0 184 I 1.3 0.09 M93650 Human paired box gene (PAX6) “homologue,” complete cds 82 −29 NC 0 0 −4 NC 0 0 −30 MD 1.6 0.09 S75463 P43 = mitochondrial elongation factor homolog “[human,” “liver,” “mRNA,” 1644 nt] 1529 47 NC 0 0 −214 NC 0 0 321 I 1.2 0.09 X69550 H. sapiens mRNA for rho GDP-dissociated inhibitor 1 977 66 NC 0 0 130 NC 0 0 237 I 1.2 0.09 X75535 H. sapiens mRNA for PxF protein 50 * 19 NC 0 0 −8 NC 0 0 31 I 1.6 0.09 X82554 H. sapiens SPHAR gene for cyclin-related protein 33 −17 NC 0 0 −15 NC 0 0 −25 MD ˜1.7 0.09 Y00815 Human mRNA for LCA-homolog. LAR protein (leukocyte antigen related) 204 6 NC 0 0 −25 NC 0 0 84 I 1.4 0.09 Y08613 H. sapiens alternative 3′ UTR of Nup88 mRNA. /gb = Y08613 /ntype = RNA −7 * 54 NC 0 0 24 NC 0 0 38 MI ˜1.6 0.09 D50914 Human mRNA for KIAA0124 “gene,” partial cds 332 −2 NC 0 0 26 NC 0 0 108 MI 1.3 0.08 D55654 Human mRNA for cytosolic malate “dehydrogenase,” complete cds 490 31 NC 0 0 65 NC 0 0 −117 MD 1.3 0.08 G2279-HT237 Triosephosphate isomerase 3121 149 NC 0 0 −172 NC 0 0 490 I 1.2 0.08 L34587 Homo sapiens RNA polymerase II elongation factor “SIII,” p15 subunit “mRNA,” com 704 77 NC 0 0 101 NC 0 0 173 I 1.2 0.08 L49054 Homo sapiens t(3;5)(q25.1;p34) fusion gene NPM-MLF1 mRNA, complete cds. 4 * 3 NC 0 0 17 NC 0 0 28 I ˜1.6 0.08 M64676 Human K+ channel subunit “gene,” complete cds 31 * −25 NC 0 0 −25 NC 0 0 −30 MD ˜1.5 0.08 S67325 propionyl CoA carboxylase beta subunit “[human,” “liver,” “placenta,” “HL1008,” “mR 86 64 NC 0 0 0 NC 0 0 42 MI 1.5 0.08 U25435 Human transcriptional repressor (CTCF) “mRNA,” complete cds 42 1 NC 0 0 17 NC 0 0 24 MI 1.6 0.08 U26914 Human ras-responsive element binding protein (RREB-1) “mRNA,” complete cds 31 −19 NC 0 0 −31 NC 0 0 −34 D ˜1.5 0.08 Y07829 exon A2 from H. sapiens gene encoding RING finger protein. /gb = Y07829 /ntype = DN −90 * 62 NC 0 0 106 I ˜1.0 0 116 I ˜1.3 0.08 Z56281 H. sapiens mRNA for interferon regulatory factor 3 134 * 4 NC 0 0 −25 NC 0 0 56 I 1.4 0.08 5063 37 NC 0 0 −18 NC 0 0 634 I 1.1 0.07 D11428 Human mRNA for PMP-22(PAS-II/SR13/Gas-3) of peripheral “myelin,” complete cds 88 −15 NC 0 0 20 NC 0 0 −29 MD 1.5 0.07 D13118 Human mRNA for ATP synthase subunit c encoded by P1 gene 746 72 NC 0 0 −90 NC 0 0 169 I 1.2 0.07 D28589 Human mRNA “(KIAA00167),” partial sequence. /gb = D28589 /ntype = RNA 428 −59 NC 0 0 −70 NC 0 0 −101 MD 1.3 0.07 D29012 Human mRNA for proteasome subunit “Y,” complete cds 1016 89 NC 0 0 −118 NC 0 0 205 I 1.2 0.07 D82061 Human B-cell mRNA for a member of the short-chain alcohol dehydrogenase “family 86 18 NC 0 0 −3 NC 0 0 38 I 1.4 0.07 L37792 Human syntaxin 1A “mRNA,” complete cds 75 8 NC 0 0 −7 NC 0 0 36 MI 1.5 0.07 M15182 Human beta-glucuronidase “mRNA,” complete cds 101 −21 NC 0 0 20 NC 0 0 41 MI 1.4 0.07 M24485 Homo sapiens (clone pHGST-pl) glutathione S-transferase pl (GSTP1) “gene,” comp 1295 14 NC 0 0 −55 NC 0 0 244 I 1.2 0.07 M29610 Human glycophorin E “mRNA,” complete cds — Also Represents: J02982 8 * 11 NC 0 0 5 NC 0 0 22 I ˜1.5 0.07 U49436 Human translation initiation factor 5 (elF5) “mRNA,” complete cds 106 42 NC 0 0 −15 NC 0 0 46 I 1.4 0.07 U59831 Human transcription “factor,” forkhead related activator 4 (FREAC-4) “gene,” comple 446 −7 NC 0 0 37 NC 0 0 −98 D 1.3 0.07 U60269 putative envelope protein; orf similar to env of Type A and Type B retroviruses and to 40 * 1 NC 0 0 5 NC 0 0 21 I 1.5 0.07 U62325 Human FE65-like protein (hFE65L) “mRNA,” partial cds 33 4 NC 0 0 −12 NC 0 0 −17 MD ˜1.7 0.07 X12876 Human mRNA fragment for cytokeratin 18. — “Also Represents: M24842, M26326” 663 45 NC 0 0 −58 NC 0 0 165 I 1.2 0.07 X59417 H. sapiens PROS-27 mRNA 1741 −216 NC 0 0 −284 NC 0 0 306 I 1.2 0.07 Z29505 H. sapiens mRNA for nucleic acid binding protein sub2.3 986 −33 NC 0 0 −197 NC 0 0 218 I 1.2 0.07 D50912 Human mRNA for KIAA0122 “gene,” partial cds 64 −13 NC 0 0 15 NC 0 0 29 MI 1.5 0.06 D63390 Human mRNA for acetylhydrolase IB “beta-subunit,” complete cds 38 −17 NC 0 0 −17 NC 0 0 −15 MD 1.6 0.06 D79983 Human mRNA for KIAA0161 “gene,” complete cds 4 * 31 NC 0 0 22 NC 0 0 26 I ˜1.5 0.06 HG36-HT410 Polymyositis/Scleroderma (Pm-Scl) Autoantigen, Alt. Splice 2 — Also Represents: M58 95 19 NC 0 0 27 NC 0 0 −29 MD 1.4 0.06 M23197 Human differentiation antigen (CD33) “mRNA,” complete cds 90 23 NC 0 0 4 NC 0 0 35 I 1.4 0.06 M31303 Human oncoprotein 18 (Op18) “gene,” complete cds 330 9 NC 0 0 65 NC 0 0 −74 D 1.3 0.06 U16812 Human Bak-2 “gene,” complete cds — “Also Represents: U16811, U23765, X84213” 66 −16 NC 0 0 −9 NC 0 0 28 MI 1.4 0.06 U80184 Homo sapiens FLII “gene,” complete cds 147 * 66 NC 0 0 42 NC 0 0 49 MI 1.3 0.06 X05323 Human MRC OX-2 gene signal sequence 30 * −9 NC 0 0 −13 NC 0 0 −25 MD ˜1.5 0.06 X68560 H. sapiens SPR-2 mRNA for GT box binding protein 32 −7 NC 0 0 14 NC 0 0 −15 D ˜1.6 0.06 X96484 H. sapiens mRNA for DGCR6 protein 224 15 NC 0 0 −26 NC 0 0 70 I 1.3 0.06 X98801 H. sapiens mRNA for dynactin 234 −45 NC 0 0 −65 NC 0 0 67 MI 1.3 0.06 Y07566 H. sapiens mRNA for RIT protein 16 * 14 NC 0 0 14 NC 0 0 16 I ˜1.6 0.06 Y08999 H. sapiens mRNA for Sop2p-like protein 820 7 NC 0 0 48 NC 0 0 159 I 1.2 0.06 AF006041 Homo sapiens Fas-binding protein (DAXX) “mRNA,” partial cds. /gb = AF006041 /ntyp 173 13 NC 0 0 46 NC 0 0 51 I 1.3 0.05 D00596 Human thymidylate syntase (EC 2.1.1.45) “gene,” complete cds 592 58 NC 0 0 41 NC 0 0 120 I 1.2 0.05 D13636 Human mRNA for KIAA0011 “gene,” complete cds 121 5 NC 0 0 3 NC 0 0 39 MI 1.3 0.05 D14710 Human mRNA for ATP synthase alpha “subunit,” complete cds 1915 −21 NC 0 0 −38 NC 0 0 −255 MD 1.2 0.05 D43642 Human YL-1 mRNA for YL-1 protein (nuclear protein with DNA-binding “ability),” com 303 −10 NC 0 0 −35 NC 0 0 79 I 1.3 0.05 G3107-HT328 Plasma Membrane Calcium Pump Hpmca2a — Also Represents: U15688 34 * −1 NC 0 0 −9 NC 0 0 −12 MD 1.6 0.05 M14483 PTMA gene extracted from Human prothymosin alpha “mRNA,” complete cds — “Also 2251 54 NC 0 0 567 NC 0 0 −262 D 1.1 0.05 M81757 H. sapiens S19 ribosomal protein “mRNA,” complete cds 6279 647 NC 0 0 −9 NC 0 0 608 I 1.1 0.05 U60115 Human skeletal muscle LIM-protein SLIM1 “mRNA,” complete cds 79 13 NC 0 0 44 NC 0 0 29 I 1.4 0.05 X13973 Human mRNA for ribonuclease/anglogenin inhibitor (RAI) 528 53 NC 0 0 −102 NC 0 0 108 MI 1.2 0.05 X59766 H. sapiens mRNA for Zn-alpha2-glycoprotein −46 * 73 NC 0 0 60 NC 0 0 71 MI ˜1.2 0.05 X69836 H. sapiens mRNA sequence (15q11-13) 45 * 9 NC 0 0 −5 NC 0 0 21 MI 1.5 0.05 X80230 H. sapiens mRNA (clone C-2k) mRNA for serine/threonine protein kinase 287 36 NC 0 0 −84 NC 0 0 69 I 1.2 0.05 X82207 H. sapiens mRNA for beta-centractin (PC3) 106 −23 NC 0 0 −19 NC 0 0 38 I 1.4 0.05 X89399 H. sapiens mRNA for “ins(1,3,4,5)P4-binding” protein — Also Represents: L20688 50 0 NC 0 0 11 NC 0 0 23 I 1.5 0.05 X91257 H. sapiens mRNA for seryl-tRNA synthetase 720 −7 NC 0 0 −69 NC 0 0 131 MI 1.2 0.05 Y10376 H. sapiens mRNA for SIRP-beta1 113 * 1 NC 0 0 −38 NC 0 0 37 MI 1.3 0.05 7358 −700 NC 0 0 917 NC 0 0 562 I 1.1 0.04 AJ001421 Homo sapiens mRNA for Rer1 protein. /gb = AJ001421 /ntype = RNA 446 70 NC 0 0 85 NC 0 0 87 MI 1.2 0.04 D31764 Human mRNA for KIAA0064 “gene,” complete cds 332 10 NC 0 0 −14 NC 0 0 69 MI 1.2 0.04 J02645 Human translational initiation factor “(elF-2),” alpha subunit “mRNA,” complete cds 346 −12 NC 0 0 146 NC 0 0 70 MI 1.2 0.04 L37936 Human nuclear-encoded mitochondrial elongation factor Ts (EF-Ts) “mRNA,” 3′ end 205 9 NC 0 0 47 NC 0 0 48 MI 1.2 0.04 M13792 Human adenosine deaminase (ADA) “gene,” complete cds 135 69 NC 0 0 −2 NC 0 0 38 MI 1.3 0.04 M60483 protein phosphatase-2A catalytic subunit-alpha gene extracted from Human protein p 109 0 NC 0 0 20 NC 0 0 −26 MD 1.3 0.04 M65254 Protein phosphatase 2A 65 kDa regulatory subunit-beta “mRNA,” complete cds 47 −3 NC 0 0 14 NC 0 0 −14 MD 1.4 0.04 M69197 HPR from Human haptoglobin and haptoglobin-related protein (HP and HPR) “genes 11 * 22 NC 0 0 5 NC 0 0 17 I ˜1.4 0.04 M84332 Human ADP-ribosylation factor 1 gene 1308 138 NC 0 0 62 NC 0 0 163 I 1.1 0.04 U23143 Human mitochondrial serine hydroxymethyltransferase “gene,” nuclear encoded mito 316 33 NC 0 0 −4 NC 0 0 70 MI 1.2 0.04 U25988 Human pregnancy-specific glycoprotein 13 (PSG13′) “mRNA,” complete cds 280 * 13 NC 0 0 5 I 1 0 62 MI 1.2 0.04 U43944 Human breast cancer cytosolic NADP(+)-dependent malic enzyme “mRNA,” partial c 66 12 NC 0 0 25 NC 0 0 −19 D 1.4 0.04 X78565 H. sapiens mRNA for “tenascin-C,” 7560bp 41 * −24 NC 0 0 −4 NC 0 0 16 I 1.4 0.04 AF001548 815A9.1 gene (myosin heavy chain) extracted from Homo sapiens chromosome 16 B −5 * −14 NC 0 0 −5 NC 0 0 30 MI ˜1.3 0.03 8301 −487 NC 0 0 1056 NC 0 0 489 I 1.1 0.03 D15049 Human mRNA for protein tyrosine phosphatase 26 −23 NC 0 0 −15 NC 0 0 −24 MD ˜1.3 0.03 G3415-HT359 Poliovirus Receptor 224 −23 NC 0 0 22 NC 0 0 46 MI 1.2 0.03 G4606-HT501 “Centractin,” Alpha 174 −28 NC 0 0 16 NC 0 0 35 MI 1.2 0.03 G4747-HT519 Nadh-Ublquinone “Oxidoreductase,” 51 Kda Subunit 149 −16 NC 0 0 25 NC 0 0 35 I 1.2 0.03 J03027 Human MHC class I HLA-6.09 “gene,” complete cds 8 * 13 NC 0 0 4 NC 0 0 18 I ˜1.3 0.03 L15189 Homo sapiens mitochondrial HSP75 mRNA, complete cds. — Also Represents: L1106 204 17 NC 0 0 109 NC 0 0 −37 D 1.2 0.03 L36529 Human (clone N5-4) protein p84 “mRNA,” complete cds 25 * −13 NC 0 0 −8 NC 0 0 −22 MD ˜1.2 0.03 M14219 Human chondroitin/dermatan sulfate proteoglycan (PG40) core protein “mRNA,” com 6 * −7 NC 0 0 37 NC 0 0 19 I ˜1.3 0.03 S67156 ASP = aspartoacylase “[human,” “kidney,” “mRNA,” 1435 nt] 27 * −7 NC 0 0 −7 NC 0 0 −9 MD ˜1.4 0.03 U09646 Human camitine palmitoyltransferase II precursor (CPT1) gene 1 * 1 NC 0 0 10 NC 0 0 24 MI ˜1.3 0.03 U33936 Human adenosine kinase “mRNA,” complete cds. /gb = U33936 /ntype = RNA — Also Re 100 6 NC 0 0 16 NC 0 0 −23 MD 1.3 0.03 U81556 Human hypothetical protein A4 “mRNA,” complete cds 340 −26 NC 0 0 −138 NC 0 0 64 I 1.2 0.03 U89505 Human Hlark “mRNA,” complete cds. 511 −6 NC 0 0 −114 NC 0 0 71 MI 1.1 0.03 U92436 Human mutated in multiple advanced cancers protein (MMAC1) “mRNA,” complete c −4 * 18 NC 0 0 13 NC 0 0 29 I ˜1.3 0.03 X06614 Human mRNA for receptor of retinoic acid 119 18 NC 0 0 −65 NC 0 0 28 MI 1.2 0.03 X62535 H. sapiens mRNA for diacylglycerol kinase 174 * −5 NC 0 0 −32 NC 0 0 36 I 1.2 0.03 X64643 H. sapiens c6.1A mRNA 25 * −26 NC 0 0 −10 NC 0 0 −25 MD ˜1.2 0.03 X69654 H. sapiens mRNA for ribosomal protein S26 3581 28 NC 0 0 −544 NC 0 0 314 I 1.1 0.03 X74570 H. sapiens mRNA for Gal-beta(1-3/1-4)GlcNAc alpha-2.3-sialyltransferase 93 * −47 NC 0 0 11 NC 0 0 25 MI 1.3 0.03 X83572 H. sapiens ARSD mRNA 104 * −54 NC 0 0 −78 NC 0 0 25 I 1.2 0.03 X94910 H. sapiens mRNA for ERp31 protein 318 −81 NC 0 0 52 NC 0 0 53 MI 1.2 0.03 X99975 H. sapiens mRNA for hRTR/hGCNF protein −1 * 10 NC 0 0 23 NC 0 0 27 I ˜1.3 0.03 Y08991 H. sapiens mRNA for adaptor protein p150 55 * 0 NC 0 0 18 NC 0 0 18 I 1.3 0.03 24 −2 NC 0 0 −5 NC 0 0 −20 D ˜1.2 0.02 D16562 Human mRNA for ATP synthase gamma-subunit “(L-type),” complete cds 628 89 NC 0 0 265 NC 0 0 −56 MD 1.1 0.02 D38145 Human mRNA for prostacyclin “synthase,” complete cds 24 * −13 NC 0 0 −16 NC 0 0 −28 MD ˜1.2 0.02 D56495 Human mRNA for Reg-related sequence derived peptide-2 26 12 NC 0 0 10 NC 0 0 −11 D ˜1.3 0.02 L16991 Human thymidylate kinase (CDC8) “mRNA,” complete cds 254 30 NC 0 0 −2 NC 0 0 40 I 1.2 0.02 M14676 Human src-like kinase (slk) “mRNA,” complete cds 128 −22 NC 0 0 −22 NC 0 0 −21 MD 1.2 0.02 M33680 Human 26-kDa cell surface protein TAPA-1 “mRNA,” complete cds 1959 −64 NC 0 0 79 NC 0 0 159 I 1.1 0.02 M59371 Human protein tyrosine kinase “mRNA,” complete cds 191 23 NC 0 0 8 NC 0 0 32 I 1.2 0.02 M93143 Human plasminogen-like protein (PLGL) “mRNA,” complete cds. 13 * −5 NC 0 0 −5 NC 0 0 12 MI ˜1.2 0.02 U14575 Human (ard-1) “mRNA,” complete cds 49 11 NC 0 0 0 NC 0 0 11 MI 1.2 0.02 U86529 Human glutathione transferase Zeta 1 (GSTZ1) “mRNA,” complete cds. /gb = U86529 347 34 NC 0 0 −61 NC 0 0 49 MI 1.1 0.02 U88898 Human endogenous retroviral H protease/integrase-derived ORF1 “mRNA,” complete 97 * −28 NC 0 0 −13 NC 0 0 21 MI 1.2 0.02 X99699 H. sapiens mRNA for XIAP associated factor-1 65 * −26 NC 0 0 −57 NC 0 0 16 I 1.3 0.02 L00137 GHRF gene (growth hormone releasing factor) extracted from Human growth hormon 4 * −8 NC 0 0 17 NC 0 0 18 MI ˜1.1 0.01 M59807 Human NK4 “mRNA,” complete cds 234 * −57 NC 0 0 −16 NC 0 0 16 MI 1.1 0.01 S46622 calcineurin A catalytic subunit “[human,” “testis,” “mRNA,” 2134 nt] 23 * −1 NC 0 0 8 NC 0 0 −17 MD ˜1.1 0.01 U02019 Human AU-rich element RNA-binding protein AUF1 “mRNA,” complete cds 22 * −1 NC 0 0 0 NC 0 0 −22 MD ˜1.1 0.01 U17886 Human succinate dehydrogenase iron-protein subunit (sdhB) gene 337 42 NC 0 0 19 NC 0 0 34 MI 1.1 0.01 U37251 Human KRAB zinc finger protein (ZNF177) “mRNA,” splicing “variant,” complete cds 22 * −20 NC 0 0 4 NC 0 0 −25 D ˜1.1 0.01 U45975 Human phosphatidylinositol “(4,5)bisphosphate” 5-phosphatase homolog “mRNA,” pa 137 23 NC 0 0 12 NC 0 0 14 D 1.1 0.01 U74612 Human hepatocyte nuclear factor-3/fork head homolog 11A (HFH-11A) mRNA compl 326 0 MI 1 0 −22 NC 0 0 19 MI 1.1 0.01 X85134 H. sapiens RBQ-3 mRNA 22 3 NC 0 0 −9 NC 0 0 −26 D ˜1.1 0.01 Z68747 H. sapiens mRNA for imogen 38 /gb = Z68747 /ntype = RNA 22 * −2 NC 0 0 37 NC 0 0 −22 D ˜1.1 0.01 AB000114 Human mRNA for ”osteomodulin,” complete cds 12 * 22 NC 0 0 −8 NC 0 0 −35 D ˜1.0 0

TABLE 5 ISGs and IRGs identified from mouse embryonic fibroblast incubated in the presence or absence of IFN-αBBDB Database: GenBank accession numbers Diff, difference I = those genes that were induced or upregulated by the treatment (ISGs) D = those genes that were repressed or downregulated by the treatment (IRGs) Fold C, fold change Sig, significance factor intensity Change Dif B Fold C Sig X56602 Mus musculus mRNA interferon-induced 15-KDa protein gene 2655 2499 I 17 22.12 L32974 “Mouse interferon-inducible protein homologue mRNA, complete cds” gene 1829 1699 I 14 16.11 U73037 “Mus musculus interferon regulatory factor 7(mirf7) mRNA, complete cds” gene 890 844 I 19.4 13.81 X98519 M. musculus mRNA for interleukin 11 receptor gene 52 −868 D 17.8 13.37 M86829 “Mus musculus (crg-2) mRNA, complete cds” gene 624 599 I * 24.6 13.15 AA153021 mq67e05.r1 Soares 2NbMT Mus musculus cDNA clone 583808 5′ similar to gb:M55543 est 528 515 I * ˜26.4 12.6 U15636 “Mus musculus GTP binding protein (GTP2) mRNA, complete cds” gene 476 464 I * ˜23.8 11.39 L32973 “Mouse thymidylate kinase homologue mRNA, complete cds” gene 328 309 I * ˜16.4 7.57 U19119 “Mus musculus G-protein-like LRG-47 mRNA, complete cds” gene 400 367 I 12.2 6.78 U06924 “Mus musculus signal transducer and activator of transcription (Stat1) mRNA, complete gene 461 420 I 11.1 6.76 M63620 “Mus musculus predicted GTP binding protein (IRG-47) mRNA, complete cds” gene 265 255 I * ˜13.3 5.98 M34815 “Mouse monokine induced by gamma interferon (MIG) mRNA, complete cds” gene 260 245 I * ˜13.0 5.78 U46637 “Mus musculus thymic shared antigen-1 (TSA-1) gene, complete cds” gene 1717 1371 I 5 5.53 U22031 “Mus musculus 20S proteasome subunit Lmp7 (Lmp7d allele) mRNA, complete cds” gene 382 340 I 9 5.14 U15635 “Mus musculus IFN-gamma induced (Mg11) mRNA, complete cds” gene 380 331 I 7.7 4.36 AA013783 mh13a03.r1 Soares mouse placenta 4NbMP13.5 14.5 Mus musculus cDNA clone 4423 est 250 223 I * 9.5 4.34 U44731 “Mus musculus putative purine nucleotide binding protein mRNA, complete cds” gene 241 211 I 8.1 3.65 X56548 M. musculus Np-b mRNA for purine-nucleoside phosphorylase gene 833 641 I 4.3 3.16 L16894 “Mus musculus Cylcophilin C (CyCPA) mRNA, complete cds” gene 765 586 I 1.3 2.96 L04262 “Mus musculus(clones p10a-[1.5n, 1.7]b and pG4-14) lysyl oxidase gene, exon 7 and cd gene 278 −788 D 3.8 2.93 M21117 “Mouse interferon-onduced Mx1 protein gene conferring selective resistance to influenza gene 152 450 I * ˜7.6 2.9 U60328 “Mus musculus proteasome activator PA28 alpha subunit mRNA, complete cds” gene 366 293 I 5.1 2.61 X75129 “M. musculus (129/Sv) gene for xanthing dehydrogenase, exon 1” gene 188 159 I 6.5 2.55 W13646 ma93f05.r1 Soares mouse p3NMF19.5 Mus musculus cDNA clone 318273 5′ similar to est 140 127 I * ˜7.0 2.46 W13646 ma93f05.r1 Soares mouse p3NMF19.5 Mus musculus cDNA clone 318273 5′ similar to est 136 122 I ˜6.8 2.34 U33626 “Mus musculus PML isoform 1 (Pml) mRNA, complete cds” gene 163 137 I 6.2 2.24 X52574 Mouse mRNA from Mov10 locus gene 164 136 I * 6 2.15 L39123 “Mus musculus apolipoprotein D (apoD) mRNA, complete cds” gene 530 322 I 4 1.98 D21207 “Mouse mRNA for peripheral-type benzodiazepine receptor, complete cds” gene 657 468 I 3.5 1.93 U43085 “Mus musculus glucocorticoid-attenuated response gene 39 (GARG-39) mRNA, complete gene 115 109 I * ˜5.8 1.85 AA165782 mt74e04.r1 Soares mouse lymph node NbMLN Mus musculus cDNA clone 635646-5′ s est 402 291 I 3.6 1.63 U43084 “Mus musculus glucocorticoid-attenuated response gene 16 (GARG-39) mRNA, complete gene 107 96 I * ˜5.3 1.58 M44537 “Mus musculus HAM1 gene, complete cds” gene 151 120 I 4.9 1.58 U60329 “Mus musculus proteasome activator PA28 beta subunit mRNA, complete cds” gene 403 287 I 3.5 1.52 W76686 “me81f08.r1 Soares mouse embryo NbME13.5 14.5 Mus musculus cDNA clone 401991 est 235 177 I 4.1 1.51 X04653 Mouse mRNA fro Ly-6 alloantigen (Ly-6E.1) gene 2057 1175 I 2.3 1.47 M31419 “Mouse 204 interferon-activatable protein mRNA, complete cds” gene 116 92 I 4.9 1.4 AA013830 “mh04h06.r1 Soares mouse placenta 4NbMP13.5 14.5 Mus musculus cDNA clone 441 est 99 84 I * ˜4.9 1.34 AA002528 mg54a04.r1 Soares mouse embryo NbME13.5 14.5 Mus musculus cDNA clone 427566 est 571 374 I * 2.9 1.27 U02298 “Mus musculus NIH 3T3 chemokine rantes (Scya5) gene, complete cds” gene 117 91 I 4.6 1.27 U65313 “Mus musculus ras-GTPase-activating SH3-domain binding proteifl (G3BP) gene, complete gene 128 99 I 4.4 1.27 U46690 “Mus musculus ATP-dependent RNA helicase mRNA, partial cds” gene 178 133 I 3.9 1.23 D44464 “Mouse mRNA for uridine phosphorylase, complete cds” gene 96 75 I * 4.5 1.14 X70058 M. musculus cytokine gene gene 2114 1107 I 2.1 1.12 L38847 “Mus musculus hepatoma transmembrane kinase ligand (HTK ligand) mRNA, complete gene 26 −81 D 4.1 1.02 AA060167 mj72h03.r1 Soares mouse p3NMF19.5 Mus muscufus cDNA clone 481685 5′ similar to est 96 73 I 4.2 1.02 D76440 “Mouse gene for necdin, complete cds and promoter sequence” gene 387 251 I 2.8 1.01 AA059700 mj77g08.r1 Soares mouse p3NMF19.5 Mus musculus cDNA clone 482174 5′ similar to est. 1306 1107 I 2.2 1 M86736 “Mouse acrogranin mRNA, complete cds” gene 652 390 I 2.5 0.97 X07699 Mouse nucleolin gene gene 106 −200 D 2.9 0.93 AA072961 “mm80b02.r1 Stratagene mouse embryonic carcinomaRA (#937318) Mus musculus cD est 80 72 I * ˜4.0 0.92 X51397 Murine MyD88 mRNA induced by interleukin-6 gene 194 133 I * 3.2 0.91 AA106166 mm18d01.r1 Stratagene mouse diaphragm (#937303) Mus musculus cDNA clone 5218 est 165 116 I 3.3 0.9 L10244 “Mouse spermidine/spermine N1-acetyltransferase (SSAT) mRNA, complete cds” gene 384 241 I 2.7 0.89 AA034714 “mi55h03.r1 Soares mouse embryo NbME13.5 14.5 Mus musculus cDNA clone 467477 est 911 −892 D 2 0.88 W41883 “mc64g08.r1 Soares mouse embryo NbME13.5 14.5 Mus musculus cDNA clone 35334 est 1394 718 I 2.1 0.87 D13664 Mouse mRNA for osteoblast specific factor 2 (OSF-2) gene 234 −338 D 2.4 0.87 M21050 “Mouse lysozyme M gene, exon 4” gene 421 −513 D 2.2 0.87 M73748 “Mouse OTS-8 mRNA, complete cds” gene 568 331 I 2.4 0.83 X58251 MouseCOL1A2 mRNA for pro-alpha-2(I) collagen gene 7702 2811 I 1.6 0.81 L11613 “Mus musculus proteasome (imp2) gene, complete mRNA” gene 72 75 I * ˜3.6 0.81 M63658 “M. musculus G protein. beta-subunit mRNA, complete cds” ge.ne 129 90 I 3.4 0.8 M33960 “Mouse plasminogen activator inhibitor (PAI-1) mRNA, complete cds” gene 2684 1191 I 1.8 0.79 U08020 “Mus musculus FVB/N collagen pro-alpha-1 type I chain mRNA, complete cds” 1936 914 I 1.9 0.79 AA170444 ms90f10.r1 Soares mouse 3NbMS Mus musculus cDNA clone 618859 5′ similar to SW 150 102 I 3.1 0.77 AA087943 “mn94h06.r1 Stratagene mouse lung 937302 Mus musculus cDNA clone 55177l 5′ sim est 602 338 I 2.3 0.75 U51992 “Mus musculus interferon stimulated gene factor gamma mRNA, complete cds” gene 74 56 I ˜3.7 0.74 W13646 ma93f05.r1 Soares mouse p3NMF1.9.5 Mus musculus cDNA clone 318273 5′ similar to est 3002 1253 I 1.7 0.71 M57890 “Mouse factorB mRNA, complete cds” gene 130 89 I 3.1 0.7 M21065 “Mouse interferon regulatory factor 1 mRNA, complete cds” gene 112 78 MI 3.2 0.7 L04961 Mouse nuclear-localized inactive X-specific transcript (Xist) mRNA gene 13 −56 D ˜3.5 0.66 X14425 Mouse mRNA for profilin gene 557 305 I 2.2 0.66 D49382 “Mouse Nedd5 mRNA for DIFF6- orCDC3,10,11,12-like protein with GTPase-motif” gene 114 −172 D 2.5 0.65 U02997 “Mus musculus 129 cryptdin-2 (Defcr2) gene, exon 2 and complete cds” gene 150 97 MI 2.8 0.62 D28599 “Mouse mRNA for proteoglycan, PG-M” gene 68 −113 D 2.7 0.6 M55154 “Mouse transglutaminase (TGase) mRNA, complete cds” gene 68 48 I 3.4 0.59 M26270 “mouse stearoyl-CoA desaturase (SCD2) mRNA, complete cds” gene 191 −231 D 2.2 0.58 X51703 Mouse mRNA for ubiquitin gene 7705 2388 I 1.4 0.56 Y00516 Mouse mRNA for aidolase A gene 3042 1149 I 1.8 0.55 U59463 “Mus musculus ICH-3 mRNA, complete cds” gene 86 58 i 3.1 0.55 AA068780 mm64g04.r1 Stratagene mouse embryonic carcinoma (#937317) Mus musculus cDNA est 63 50 MJ ˜3.1 0.53 W45807 mc80a10.r1 Soares mouse embryo NbME13.5 14.5 Mus musculus cDNA clone 354810 est 63 46 MJ * ˜3.2 0.5i U29152 “Mus musculus aldose reductase mRNA, complete cds” gene 675 328 I 1.9 0.51 U60087 “Mus musculus TAP2 (TAP2-d) mRNA, complete cds” gene 61 50 J * ˜3.0 0.5 D88793 “Mouse mRNA for cystein rich protein-1, complete cds” gene 337 181 i 2.2 0.49 U27838 “Mus musculus glycosyl-phosphatidyl-inositol-anchored protein homolog mRNA, compl gene 83 −95 D 2.5 0.48 AA117100 mo60a10.r1 Stratagene mouse Tcell 937311 Mus musculus cDNA clone 557946 5′ sim est 196 −211 D 2.1 0.48 U77630 “Mus musculus adrenomedullin precursor mRNA, complete cds” gene 182 97 MI 2.5 0.48 X77952 M. musculus (CDI) endoglin mRNA gene 61 44 I ˜3.1 0.47 AA118758 mp59h02.r1 Soares 2NbMT Mus musculus cDNA clone 573555 5′ similar to gb:X54326 est 37 −64 D 2.7 0.47 W82026 me96a05.r1 Soares mouse embryo NbME13.5 14.5 Mus musculus cDNA clone 403376 est 294 159 I 2.2 0.46 X75313 M. musculus (C57BL/6) GB-like mRNA gene 7224 2071 I 1.4 0.46 U14172 “Mus musculus p162 protein mRNA, complete cds” gene 28 −51 D 2.9 0.46 W29730 mc09c09.r1 Soares mouse p3NMF19.5 Mus musculus cDNA clone 348016 5′ similar to est 292 158 I 2.2 0.46 M58691 “Mouse growth factor-inducible protein mRNA, complete cds” gene 72 47 MI 2.9 0.45 J05186 “Mouse protein disuifide isomerase-related protein (ERp72)mRNA, complete cds” gene 575 276 I 1.9 0.45 AA097287 mk16h10.r1 Sbares mouse p3NMF19.5 Mus musculus cDNA clone A93123 5′ similar to est 155 91 MI 2.4 0.43 X63535 M. musculus ufo mRNA gene 564 264 J 1.9 0.42 M91458 “Mus musculus sterol-carrier protein X mRNA, complete cds” gene 58 −82 D 2.4 0.41 X80638 M. musculus rhoC mRNA gene 804 350 I 1.8 0.41 U50712 “Mus musculus monocyte chemoattractant protein-5 precursor(MCP-5) mRNA, comple gene 57 42 I ˜2.9 0.41 U27455 “Mus musculus serine palmitoyltransferase LCB2 subunit mRNA, complete cds” gene 110 66 I 2.5 0.41 AA114648 mn04b0S.r1 Beddington mouse embryonic region Mus musculus cDNA clone 536913 5 est 83 52 I 2.7 0.41 AA033424 m136b07.r1 Soares mouse embryo NbME13.5 14.5 Mus musculus cDNA clone 465589 est 20 −38 D 2.9 0.4 W36586 mb86c07.r1 Soares mouse p3NMF19.5 Mus musculus cbNA clone 336300 5′ similar to est 43 −65 D 2.5 0.4 D38379 Mouse mRNA for pyrubate kinase M gene 2164 748 I 1.5 0.38 W85270 mf42d05.r1 Soares mouse embryo NbME13.5 14.5 Mus musculus cDNA clone 407721 est 507 233 I 1.9 0.38 D87903 “Mouse mRNA for ARF6, complete cds” gene 122 70 I 2.4 0.37 AA140026 mq39h04.r1 Barstead MPLRB1 Mus musculus cDNA clone 581143 5′ similar to TR:G92 est 24 −41 ME 2.7 0.37 L14677 “Mus musculus Epoc-1 mRNA, complete cds” gene 54 40 I ˜2.7 0.36 Z49085 M. musculus mRNA for mouse developmental kinase 2 (MDK2) gene 399 188 I 1.9 0.36 AA080704 mj63b03.d Soares mouse P3NMF19.5 Mus musculus cDNA clone 480749 5′ similar to est 436 203 I 1.9 0.36 U58884 “Mus musculus SH3-containing protein SH3P7 mRNA, complete cds similar to Human gene 125 72 MI 2.3 0.36 U38196 “Mus musculus palmytoylated protein p55 mRNA, complete cds” gene 73 45 MI * 2.6 0.36 M38381 “Mouse serine threonine tyrosine kinase (STY) mRNA, complete cds” gene 13 −40 D ˜2.7 0.35 L15429 “Mus musculus L6 antigen mRNA, complete cds” gene 825 336 I 1.7 0.35 AA170104 “ms49a04.r1 Life Tech mouse embryo 13.5dpc 10686014 Mus musculus cDNA clone 6 est 54 38 I ˜2.7 0.35 M60474 “Mouse myristoylated alanine-rich C-kinase substrate (MARCKS) mRNA, complete cds” gene 128 −128 D 2 0.35 AA034714 “mi55h03.r1 Soares mouse embryo NbME13.5 14.5 Mus musculus cDNA clone 467477 est 1807 −829 D 1.5 0.34 AA034874 mi53a02.r1 Soares mouse embryo NbME13.5 14.5 Mus musculus cDNA clone 467210 est 55 34 I * 2.7 0.34 U38981 “Mus musculus uterine mRNA, complete cds” gene 13 −40 D ˜2.6 0.34 X81582 M. musculus mRNA for insulin-like growth factor binding protein-4 gene 371 174 I 1.9 0.34 M19681 “Mouse platelet-derived growth factor-inducible protein (JE) gene, complete cds” gene 1798 618 I 1.5 0.34 W36757 mb94b01.r1 Soares mouse p3NMF19.5 Mus musculus cDNA clone 337033 5′ similar to est 235 −194 D 1.8 0.33 X16319 Mouse mRNA for 54K subunit of signal recognition particle gene 33 −47 D 2.4 0.32 D63902 “Mouse mRNA for estrogen-responsive finger protein, complete cds” gene 72 43 MI * 2.5 0.32 D10727 “Mouse mRNA for NDPP-1 protein, complete cds” gene 19 −34 MD ˜2.7 0.32 L09104 “Mus musculus glucose phosphate isomerase mRNA, 3′ end” gene 389 174 I 1.8 0.31 M22479 “Mouse tropomyosin isoform 2 mRNA, complete cds” gene 650 −387 D 1.6 0.31 U78085 “Mus. musculus ribosomal protein S5 mRNA, complete cds” gene 2491 767 I 1.4 0.31 J04179 “Mouse chromatin nonhistone high mobility group protein (HGM-I(Y), complete cds” gene 355 162 I 1.8 0.31 X99572 M. musculus mRNA for new member of PDGFNEGT family of growth factors gene 111 61 MI 2.2 0.3 AA107455 mp08f02.r1 Life Tech mouse embryo 8. 5dpc 1066401.9 Mus musculus cDNA clone 568 est 122 65 I 2.2 0.29 M21285 “Mouse stearoyl-CoA desaturase gene, exon 6” gene 117 −110 D 1.9 0.29 M28071 “Mouse tissue factor (mtf) mRNA, complete cds” gene 134 71 MI 2.1 0.29 U25633 “Mus musculus tumor-associated membrane protein (TMP) mRNA, complete cds” gene 551 227 I 1.7 0.29 AA103356 mo18e02.r1 Life Tech mouse embryo 13 5dpc 10666014 Mus musculus cDNA clone 55 est 137 72 MI 2.1 0.29 Z30970 M. musculus (Balb/C) TIMP-3 gene for metalloproteinase-3 tissue inhibitor gene 118 −108 D 1.9 0.28 U69488 “Mus musculus viral envelope like protein (G7e) gene, complete cds” gene 105 56 MI 2.2 0.27 X07997 Mouse mRNA for cytotoxic T-cell membrane glycoprotein Ly-3 340 flank gene 121 −108 D 1.9 0.27 X07295 M. musculus mitochondrial malate dehydrogenase gene 5′ flank and exon 1 (and joined( gene 290 −201 D 1.7 0.27 X75313 M. musculus (C57BL/6) GB-like mRNA gene 4600 1132 I 1.3 0.26 AA118729 mp57g08.r1 Soares 2NbMT Mus musculus cDNA clone 573374 5′ sirnilar to SW:TRAM est 63 36 I 2.3 0.26. L19932 “Mouse (beta ig-h3) mRNA, complete cds” gene 140 71 I 2 0.26 D86232 “House mouse; Musculus domesticus mRNA for Ly-6C variant, complete cds” gene 128 66 MI 2.1 0.26 AA089117 mt57e07.r1 Stratagene mouse testis (#937308) Mus. musculus cDNA clone 516132 5′ s est 13 −35 D ˜2.4 0.26 M57999 “Mouse transcription factor NF-kappa-B DNA binding subunit mRNA, complete cds” gene 41 −48 D 2.2 0.25 AA034714 “mi55h03.r1 Soares mouse embryo NbME13.5 14.5 Mus musculus cDNA clone 467477 est 567 −308 D 1.5 0.25 X61172 Mouse mRNA for alpha-mannosidase II gene 73 −71 D 2 0.25 X65128 M. musculus gas1 mRNA gene 582 223 I 1.6 0.25 AA105621 “rnm68b06.r1 Stratagene mouse macrophage (#937306) Mus musculus cDNA clone 53 est 666 249 I 1.6 0.25 W99875 “mg28d12.r1 Soares mouse embryo NbME13.5 14.5 Mus musculus cDNA clone 42491 est 460 183 I 1.7 0.24 X65582 M. musculus mRNA for alpha-2 collagen VI gene 521 201 I 1.8 0.24 W08610 mb46d04.r1 Soares mouse p3NMF19.5 Mus musculus cDNA clone 332455 5′ similar to est 218 98 MI 1.8 0.24 D83784 “Mouse mRNA for MIDA1, complete cds” gene 19 −28 D −2.4 0.23 X63162 M. musculus mRNA for transin-1 gene 850 292 I 1.5 0.23 X65553 M. musculus mRNA for poly(A) binding protein gene 622 229 I 1.6 0.23 AA106783 mm91d10.r1 Stratagene mouse embryonic carcinomaRA (#937318) Mus musculus cDN est 188 86 MI 1.9 023 AA107807 “mp04g03.r1 Life Tech mouse embryo 8 5dpc 10664019 Mus musculus cDNA clone 56 est 498 190 I 1.6 0.23 U79523 “Mus musculus peptidyiglycine alpha-amidating monooxygenase (PAM) mRNA, comple gene 48 32 I * ˜2.3 0.23 VV65178 md78h05.r1 Soares mouse embryo NbME13.5 14.5 Mus musculus cDNA clone 374553 est 52 −52 D 2 0.22 AA003431 “mg49a11.r1 Soares mouse embryo NbME13.5 14.5 Mus musculus cDNA clone 42710 est 675 235 I 1.5 0.22 X82786 M. musculus mRNA for Ki-67 gene 13 −32 D ˜2.3 0.22 W15003 mb25b12.r1 Soares mousep 3NMF19.5 Mus musculus cDNA clone 330431 5′ similar to est 47 27 MI * ˜2.3 0.22 X53929 M. musculus mRNA for PGII (decorin) gene 1023 326 I 1.5 0.22 X65026 M. musculus mRNA for GTP-binding protein gene 117 58 MI 2 0.22 AA117980 mn06b05.r1 Beddington mouse embryonic region Mus musculus cDNA clone 537105 5 est 190 86 MI 1.8 0.22 D21252 “Mouse mRNA for OSF-3, complete cds” gene 1139 358 I 1.5 0.22 W15873 “mb55b12.r1 Soares mouse p3NMF19.5 Mus musculus CDNA clone 333311 5′ similar to est 184 −124 D 1.7 0.21 L25126 “Mus musculus RNA helicase mRNA, complete cds” gene 27 −33 D 2.2 0.21 L27990 “Mus musculus Ro protein mRNA, complete cds” gene 49 28 MI * 2.3 0.21 U38940 “Mus musculus asparagine synthetase mRNA, complete cds” gene 417 181 I 1.6 0.21 X16151 Mouse mRNA for early T-lymphocyte activation 1 protein (ETa-1) gene 828 −355 D 1.4 0.2 X92665 M. musculus mRNA for ubiquitin-conjugating enzyme UbcM3 gene 144 66 I 1.9 0.2 X59728 M. musculus mRNA for gas5 growth arrest specific protein gene 277 −161 D 1.8 0.2 U34259 “Mus musculus Goigi 4-transmembrane spanning transporter MTP mRNA, complete cd gene 413 155 I 1.6 0.2 X80478 M. musculus AEBP1 mRNA gene 807 2561 1.5 .0.19 W99235 mf60c03.r1 Soares mouse embryo NbME13.5 14.5 Mus musculus cDNA clone 418660 est 45 25 MI * ˜2.2 0.19 U42386 “Mus musculus fibroblast growth factor inducible gene 14 (FIN14) mRNA, complete cds gene 34 −35 D 2 0.19 W13875 “mb36g03.r1 Soares mouse p3NMF19.5 Mus musculus cDNA clone 331540 5′ similar to est 433 156 I 1.6 0.19 M28723 “Mus musculus housekeeping-type protein (MERS) mRNA, complete cds” gene 30 −33 D 2.1 0.19 M77174 “Mouse perlecan mRNA, complete cds” gene 58 −51 ME 1.9 0.18 J03776 “Mouse down regulatory protein (rpt-1r) of interleukin 2 receptor mRNA, complete cds” gene 42 29 I * ˜2.1 0.18 W41883 “mc64g08.r1 Soares mouse embryo NbME13.5 14.5 Mus musculus cDNA clone 35334 est 1106 317 I 1.4 0.18 L38611 “Mus musculus protein synthesis initiation factor 4A (elf-4A) gene, exons 10 and 11, cor gene 543 183 I 1.5 0.18 D10578 Mouse mRNA for ubiquitin activating enzyme E1 gene 442 157 I 1.5 0.18 AA036265 “rni72g03.r1 Soares mouse embryo NbME13.5 14.5 Mus musculus CDNA clone 469108 est 64 32 I 2 0.18 Y00309 Mouse LDH-A gene for lactate dehydrogenase-A gene 2240 547 1 1.3 0.18 M65255 “Mouse hydrophilic protein (KE2 wt) mRNA, complete cds” gene 76 −61 ME 1.8 0.18 M15525 “Mouse laminin B1 mRNA, complete cds” gene 128 −89 D 1.7 0.18 L20315 “Mus musculus MP81 gene and mRNA1 3′ end” gene 42 26 MI * ˜2.1 0.17 D10061 Mouse mRNA for DNA topoisomerase 1 gene 40 −37 D 1.9 0.17 AA000813 mg3Sh10.r1 Soares mouse embryo NbME13.5 14.5 Mus musculus cDNA clone 425827 est 155 67 MI 1.8 0.17 AA002605 mg44g07.r1 Soares mouse embryo NbME13.5 14.5 Mus musculus cDNA clone 426684 est 168 70 MI 1.7 0.17 AA028877 mh90g10.r1 Soares mouse placenta 4NbMP13.5 14.5 Mus musculus cDNA clone 4582 est 143 62 I 1.8 0.17 X01756 Mouse cytochrome c gene (MCI) gene 529 175 I 1.5 0.17 U19825 “Mus musculus macrophage migration inhibitory factor (Mif) gene, complete cds” gene 889 281 MI 1.4 0.17 M31131 “Mouse neural cadherin (N-cadherin) mRNA, complete cds” gene 35 −34 I 2 0.17 AA036574 “mi69e05.r1 Soares mouse embryo NbME13.5 14.5 Mus musculus cDNA clone 468800 est 39 −36 D 1.9 0.16 U27267 “Mus musculus LPS-induced C-X-C chernokine LIX precursor, mRNA, complete cds” gene 562 −236 D 1.4 0.16 W29420 99mb99a01.r1 Soares mouse p3NMF19.5Mus musculus cDNA clone 337512 5′ similar to est 2150 502 I 1.3 0.16 AA034646 mh17d07.r1 Soares mouse placenta 4NbMP13.5 14.5 Mus musculus cDNA clone 34427 est 37 41 I * ˜1.9 0.16 X81323 M. musculus mRNA for tripeptidyl peptidase II gene 48 −41 D 1.9 0.18 AA064066 mj62d04.r1 Soares mouse p3NMF19.5 Mus musculus cDNA clone 480679 5′ similar to est 1116 301 I 1.4 0.16 U43208 “Mus musculus phosphatidylethanolamine binding protein mRNA, complete cds” gene 1027 285 I 1.4 0.16 AA118546 mn09c06.r1 Beddington mouse embryonic region Mus musculus cDNA clone 537418 5 est 173 71 MI 1.7 0.16 AA003383 mg49d05.r1 Soares mouse embryo NbME13.5 14.5 Mus musculus cDNA clone 427113 est 50 25 MI 2 0.18 M81477 “Mouse cytoplasmic phosphotyrosine phosphatase mRNA, complete cds” gene 28 −28 D 2 0.16 AA103457 mo24g05.r1 Life Tech mouse embryo 13 5dpc 10866014 Mus musculus CDNA clone 55 est 71 34 MI 1.9 0.18 J04596 “Mouse platelet-derived growth factor-inducible KC protein mRNA, complete cds” gene 118 −78 D 1.6 0.15 U13262 “Mus musculus myelin gene expression factor (MEF-2) mRNA, partial cds” gene 15 −25 D ˜2.0 0.15 L42293 “Mus musculus acyl-coenzyme A:cholesterol acyltransferase (ACACT) mRNA, complet gene 179 70 MI 1.6 0.15 M032948 mi24a02.r1 Soares mouse embryo NbME13.5 14.5 Mus musculus cDNA clone 464426 est 105 46 MI 1.8 0.15 X66473 M. musculus mRNA for (pro)collagenase gene 115 50 MI 1.8 0.15 AA144469 mr16c09/r1 Soares mouse 3NbMS Mus musculus cDNA clone 597618 5′ similar to gb:X est 69 32 I * 1.9 0.15 W18308 “mb68h11.r1 Soares mouse p3NMF19.5 Mus musculus cDNA clone 334629 5′ similar to est 2126 478 I 1.3 0.15 W47719 est 57 27 MI 1.9 0.14 X14194 Mouse mRNA for entactin gene 178 −95 ME 1.5 0.14 AA119078 “mp65d05.r1 Soares 2NbMT Mus musculus cDNA clone 574089 5′ similar to gb:X5874C est 106 48 I 1.8 0.14 W42234 mc37a06.r1 Soares mouse p3NMF19.5 Mus musculus cDNA clone 350674 5′ similar to est 144 58 MI 1.7 0.14 Y00094 Mouse mRNA for ras-related YPT1 protein gene 687 195 I 1.4 0.14 U76832 “Mus musculus plasma membrane protein syntaxin-4 mRNA, complete cds” gene 88 39 I 1.8 0.14 W33440 mc15d01.r1 Soares mouse p3NMF19.5 Mus musculus cDNA clone 348577 5′ similar to est 223 81 MI 1.8 0.14 M12347 “Mouse skeletal alpha-actin gene, complete cds” gene 271 96 MI 1.5 0.14 X16834 Mouse mRNA for Mac-2 antigen gene 605 221 I 1.4 0.14 D88729 “Mouse mRNA for topoisomerase-inhibitor suppressed, complete cds” gene 372 −184 D 1.4 0.14 J02870 “Mouse laminin receptor mRNA, complete cds” gene 1745 −477 D 1.3 0.14 X72910 M. musculus Cd24a gene gene 84 −57 ME 1.7 0.14 M29015 “Mouse ribosomal protein L7 (rpL7) gene, complete cds” gene 110 −67 D * 1.6 0.13 W51271 est 34 −29 D 1.9 0.13 M88489 “Mouse thymidine kinase gene1 complete cds” gene 25 −23 D 1.9 0.13 L37092 “Mus musculus cyclin-dependent kinase homologue (P130PITSL) mRNA1 complete cds” gene 38 −31 D 1.8 0.13 U11073 “Mus musculus Balb/angiotensin II receptor type 2 gene, exon 3 and complete cds” gene 74 −50 ME 1.7 0.13 W71543 “me39c09.r1 Soares mouse embryo NbME13.5 14.5 Mus musculus cDNA clone 38987 est 275 126 ME 1.5 0.13 L41154 “Mus musculus SM22 alpha mRNA, complete cds” gene 2020 427 I 1.3 0.13 D49949 “Mouse mRNA for IGIF precursor polypeptide, complete cds” gene 35 37 I * ˜1.7 0.13 U37353 “Mus musculus protein phosphatase 2A B′alpha3 regulatory subunit mRNA1 partial cds” gene 57 27 1 1.9 0.13 U20372 “Mus musculus voltage-dependent calcium channel beta-3 subunit (CCHB3) mRNA, co gene 94 40 MI 1.7 0.13 D30782 “Mouse mRNA for epiregulin, complete cds” gene 17 −22 D ˜1.9 0.13 X56123 Mouse mRNA for talin gene 147 57 I 1.6 0.13 W83337 rnf25h11.r1 Soares mouse embryo NbME.13.5 14.5 Mus musculus cDNA clone 406149 est 517 155 I 1.4 0.13 W17644 mb76b03.r1 Soares mouse p3NMF19.5 Mus musculus cDNA clone 335309 5′ similar to est 1124 270 I 1.3 0.13 AA009014 mg97b12.r1 Soares mouse embryo NbME13.5 14.5 Mus musculus cDNA clone 440927 est 29 −24 D 1.8 0.12 X53753 Mouse mRNA for nonmuscle tropomyosin 5 gene 796 205 I 1.3 0.12 U49112 “Mus musculus calcium-binding protein ALG-2 (ALG-257) mRNA, complete cds” gene 196 70 MI 1.6 0.12 X53584 “Mouse mRNA for HSP60 protein (clones 3T3-71 -9, and -M1)” gene 413 −156 D 1.4 0.12 X15052 Mouse mRNA for3′-end of NCAM-140 and NCAM-180 isoforms gene 42 −32 D 1.8 0.12 X573371 M. musculus CDNAp14 mRNA gene 706 184 I 1.4 0.12 AA089264 mo59d06.r1 Stratagene mouse Tcell 937311 Mus musculus cDNA clone 557867 5′ sim est 831 212 I 1.3 0.12 W13461 mb34g09.r1 Soares mouse p3NMF19.5 Mus muscularis cDNA clone 331360 5′ similar to est 187 −89 ME 1.5 0.12 U58494 “Mus musculus melanoma cell-derived intracisternal A-particle mRNA, gag gene, comp gene 86 −52 D 1.6 0.12 AA164143 mq84c11.r1 Stratagene mouse melanoma (#937312) Mus musculus cDNA clone 58542 est 36 28 I * ˜1.8 0.12 W13502 ma85a03.r1 Soares mouse p3NMF19.5 Mus musculus cDNA clone 317452 5′ similar to est 836 212 I 1.3 0.12 W51109 est 43 −31 D 1.7 0.11 X62622 “M. musculus TIMP-2 mRNA for tissue inhibitor of metalloproteinases, Type 2” gene 75 31 I 1.7 0.11 M32309 “Mouse zinc finger protein (Zfx) mRNA, complete cds, clone pDP1119” gene 5 −29 D ˜1.7 0.11 L35556 “Mus musculus Int-6 mRNA, complete cds” gene 355 −139 ME 1.4 0.11 D14571 “Mouse mRNA for PEBP2b2 protein, complete cds” gene 111 61 D 1.6 0.11 X61940 Mouse mRNA for a growth factor-inducible immediate early gene (3CH134) gene 104 41 MI 1.6 0.11 D87663 “House mouse; Musculus domesticus mRNA for 14-3-3 epsilon, complete cds” gene 702 181 I 1.3 o.11 X95580 M. musculus mRNA for hypoxia-inducible factor I alpha gene 60 39 ME 1.6 0.11 J02623 “Mouse cytosolic aspartate aminotransferase isoenzyme mRNA, complete cds, clone pr gene 63 27 I 1.7 0.11 W46016 mc77f12.r1 Soares mouse embryo NbME13.5 14.5 Mus musculus cDNA clone 354575 est 33 30 I * ˜1.7 0.11 AA110896 mp62a09.r1 Soares 2NbMT Mus musculus cDNA clone 573784 5′ similar to SW:EPIP est 185 61 I 1.5 0.11 AA008043 mg68e02.r1 Soares mouse embryo NbME13.5 14.5 Mus musculus cDNA clone 43817C est 87 −48 D 1.6 0.1 D18432 “Mouse murine CD83 mRNA for murine homologue of CD63/ME491, complete cds” gene 1439 −334 D 1.2 0.1 D50411 “Mouse mRNA for metrin alpha, complete cds” gene 7 −27 D 1.7 0.1 Z72000 M. musculus BTG3 mRNA gene 219 701 1.5 0.1 U41785 “Mus musculus metalloprotease/disintegrin/cysteine rich protein precursor (MDC9) cDN gene 69 −41 D 1.6 0.1 Z31555 M. musculus (129/Sv) Ccte mRNA for CCT (chaperonin containing TCP-1) epsilon subu gene 699 167 I 1.3 0.1 AA168350 ms30c06.r1 Stratagene mouse skin (#937313) Mus musculus cDNA clone 608458 5′ si est 47 21 MI 1.8 0.1 AA008136 mg68g11.r1 Soares mouse embryo NbME13.5 14.5 Mus musculus cDNA clone 438212 est 967 218 1 1.3 0.1 M18194 Mouse fibronectin (FN) mRNA gene 1024 −266 D 1.3 0.1 M20658 “Mouse interleukin-1 receptor mRNA, complete cds” gene 148 −70 D 1.5 0.1 W33838 mc55c11.r1 Soares mouse embryo NbME13.5 14.5 Mus musculus cDNA clone 352438 est 48 −31 D 1.6 0.1 M25244 “Mouse pre-B celI P2B/LAMP-1 mRNA, complete cds” gene 1098 −283 D 1.3 0.1 M82831 “Mus musculus macrophage metalloelastase mRNA, complete cds” gene 5 −29 D  1.7 0.1 M84607 “Mus musculus PDGF-alpha-receptor (PDGF-alpha-R) mRNA, complete cds” gene 194 −82 D 1.4 0.1 M15668 “Mus musculus X chromosome-linked phosphoglycerate kinase (pgk-1) mRNA, comple gene 1254 254 1 1.3 0.09 AA059517 mj61c11.r1 Soares mouse embryo NbME13.5 14.5 Mus musculus cDNA clone 480596 est 14 −20 D ˜1.7 0.09 M76727 “Mouse pyruvate dehydrogenase (pdha-1) mRNA, complete cds” gene 68 −37 D 1.5 0.09 U28138 “Mus musculus dishevelled-1 protein (Dvl1) gene, complete cds” gene 39 −25 D 1.6 0.09 W98059 mg07e08.r1 Soares mouse embryo NbME13.5 14.5 Mus musculus cDNA clone 423110 est 9 −24 D ˜1.7 0..09 AA016858 mh35f03.r1 Soares mouse placenta 4NbMP13.5 14.5 Mus musculus cDNA clone 4445( est 71 27 MI 1.6 0.09 X55316 M. musculus mRNA for CAAT-box DNA binding protein subunit B (NF-YB) (partial) gene 38 −25 ME 1.7 0.09 X70847 M. musculus mRNA for adenine nucleotide translocase gene 328 90 MI 1.4 0.09 L22355 “Mus musculus vascular adhesion cell molecule-1 (VCAM1) gene, exon 10” gene 216 67 MI 1.5 0.09 D78188 Mouse mRNA for SCID complementing gene 2 gene 178 −71 D 1.4 0.08 D78647 “Mouse mRNA for phospholipase A2, complete cds” gene 168 50 MI 1.4 0.08 W17411 mb58c09.r1 Soares mouse p3NMF19.5 Mus musculus cDNA clone 3336.18 5′ s est 1137 218 I 1.2 0.08 X66084 M. musculus Pgp‘mRNA for CD44 (clone M4) gene 65 24 MI 1.6 0.08 W34756 “mc32g09.r1 Soares mouse p3NMF19.5 Mus musculus cDNA clone 350272 5′ similar to est 27 −19 D 1.7 0.08 M60847 “Mouse lipoprotein lipase (LPL) gene, exon 10” gene 197 −720 1.4 0.08 M91380 “Mus musculus TGF-beta-inducible protein (TSC-36) mRNA, complete cds” gene 962 182 I 1.2 0.07 AA114576 mo63h09.r1 Stratagene mouse heart (#937316) Mus musculus cDNA clone 558305 5′ s est 84 28 I 1.5 0.07 D000613 Mouse mRNA for matrix Gla protein (MGP) gene 1778 2781 1.2 0.07 AA119191 mp60h03.r1 Soares 2NbMT Mus musculus cDNA clone 573653 5′ similar to TR:G1017 est 248 −81 ME 1.3 0.07 W41722 mc67b11.r1 Soares mouse embryo NbME13.5 14.5 Mus musculus cDNA clone 353585 est 123 −52 ME 1.4 0.07 W62091 md84h04.r1 Soares mouse embryo NbME13.5 14.5 Mus musculus cDNA clone 375127 est 136 −49 ME 1.4 0.06 U33840 “Mus musculus TRAF-related protein (TRAFarrin) mRNA, complete cds” gene 1 −28 D ˜1.5 0.06 W29434 mb99f07.r1 Soares mouse p3NMF19.5 Mus musculus cDNA clone 337573 5′ similar to est 1188 198 I 1.2 0.06 M74227 “Mouse cyclophiiin C (cyp C) mRNA, complete cds” gene 187 −59 D 1.3 0.06 X16705 Mouse mRNA for lamin B gene 24 −15 D 1.6 0.06 L22472 “Mouse Bax alpha mRNA, complete cds” gene 249 −66 M 1.3 0.05 X04663 Mouse mRNA for beta-tubulin (isotype Mbeta 5) gene 1181 −190 D 1.2 0.05 AA003990 mg30c04.r1 Soares mouse embryo NbME13.5 14.5 Mus musculus CDNA clone 439302 est 59 −25 D 1.4 0.05 Y00769 Murine mRNA for integrin beta subunit gene 813 −155 D 1.2 0.05 AA104459 mo55a03.r1 Life Tech mouse embryo 8 5dpc 10664019 Mus musculus cDNA clone 557 est 34 12 I 1.5 0.05 AA109714 mp49e12.r1 Barstead MPLRBI Mus musculus CDNA clone 572590 45′ similar to SW:SK est 91 27 I 1.4 0.05 L25069 “Mouse catalase mRNA, complete cds” gene 90 −34 D 1.4 0.05 AA144240 mr78c07.r1 Stratagene mouse heart (#937316) Mus musculus cDNAclone 603564 5′s est 32 −16 MI 1.5 0.05 M21332 “Mouse MHC class III RD gene (H2-d and H2Sk haplotypes), complete cds” gene 51 −22 D 1.4 0.05 X04017 Mouse mRNA for cysteine-rich glycoprotein SPARC gene 1909 −232 D 1.1 0.04 D45210 “Mouse mRNA for zinc finger protein, complete cds” gene 5 −22 MD * ˜1.3 0.04 L29454 “Mouse fibrillin (Fbn-1) mRNA, complete cds” gene 284 −62 MI 1.2 0.04 U13053 Mus musculus Ras-like protein (kir) mRNA, complete cds” gene 28 17 I * ˜1.4 0.04 AA103933 mo43h05.r1 Life Tech mouse embryo 15 5dpc 10667012 Mus musculus cDNA clone 55 est 27 24 I * ˜1.4 0.04 D12907 “Mouse gene for 47-kDa heat shock protein(H8P47), exon 6” gene 1386 169 I 1.1 0.04 L01640 Mus musculus D-type GI cyclin catalytic subunit (P8K-J3/CDK4) mRNA1 complete cds gene 397 −79 MI 1.2 0.04 M64086 Mouse sp12 proteinase inhibitor (spi2/eb4) mRNA, complete cds” gene 148 31 MI 1.3 0.03 M98035 Mus musculus guanine nucleotide exchange factor delta subunit (JGR1) mRNA, comp gene 59 −17 D 1.3 0.03 AA038511 mi85h01.r1 Soares mouse p3NMF19.5 Mus musculus cDNA clone 473425 5′ similar to est 412 −73 ML 1 .2 0.03 W77701 “me81b01.r1 Soares mouse embryo NbME13.5 14.5 Mus musculus cDNA clone 40192 est 12 −14 D ˜1.3 0.03 AA009169 “mh01g11.r1 Soares mouse embryo NbME13.5 14.5 Mus musculus cDNA clone 44128 est 62 −19 MI 1.3 0.03 AA146282 “mr06e08.r1 Soares mouse 3NbMS Mus musculus cDNA clone 596678 5′ similar to gb: est 26 21 I * −1.3 0.03 M57891 Mouse complement component C2 mRNA, complete cds” gene 27 16 I * −1.3 0.03 W29424 mb99b02.r1 Soares mouse p3NMF19.5 Mus musculus cDNA clone 33751 5 5′ similar to est 191 −42 D 1.2 0.Q3 W65084 me01e06.ri Soares mous eembryo NbME13.5 14.5 Mus musculus cDNA clone 386242 est 24 29 MI * ˜1.2 0.02 W62646 md82a07.r1 Soares mouse embryo NbME13.5 14.5 Mus musculus CDNA clone 37486 est 25 −8 D 1.3 0.02 U07159 Mus musculus medium chain acyl-CoA dehydrogenase mRNA, complete cds” gene 29 −9 M( 1.3 0.02 L21973 “Mus musculus E2F1 mRNA, complete cds” gene 30 −8 MI 1.3 0.02 U05809 “Mus musculus LAF1 transketolase mRNA, complete cds” gene 142 22 MI 1.2 0.02 W34915 mc60c11.r1 Soares mouse embryo NbME13.5 14.5 Mus musculus cDNA clone 352916 est 69 −16 D 1.2 0.02 M81342 “BALB/c flbroblast growth factor receptor 3 (mFR3) mRNA, complete cds” gene 4 −21 D ˜1.2 0.02 U37413 “Mus musculus guanine nucleotide-binding protein (Gna11) gene, exon 3-7,and comple gene 136 −14 MD 1.1 0.01

TABLE 6 ISGs and IRGs identified from mouse embryonic fibroblast incubated in the presence or absence of IFN-αBBDB in the presence or absence of encephalomyocarditis virus Sample (1) untreated cells, Sample (2) cells treated for 16 h with 10,000 units per ml of IFN-αBBDB, Sample (3) cells treated for 16 h with 10,000 units per ml of IFN-αBBDB followed by infection with encephalomyocarditis virus at a multiplicity of infection of 10 plaque forming units per cell for an additional 6 h. Database: GenBank accession numbers 1 vs 2, control vs interferon 1 vs 3, control vs. interferon plus virus. 2 vs 3, interferon vs interferon plus virus Diff, difference I = those genes that were induced or upregulated by the treatment D = those genes that were repressed or downregulated by the treatment Fold C, fold change Sig, significance factor RNL +/+ - IFN/EMCV vs 2 1 vs 3 2 vs 3 Database EntrezDefinition Seq C R Dif B Fold C Sig Di B Fold C Sig Dif B Fold C Sig X56602 Mus musculus mRNA Interferon-induced 15-KDa protein gene B N I * ˜165. 57.7 I * ˜120. 45.56 D 1.4 0.4 U73037 “Mus musculus interferon regulatory factor 7 (mirf7) mRN gene C N I * ˜117. 44.7 I * ˜105. 41.26 NC 0 0 L32974 “Mouse interferon-inducible protein homologue mRNA, co gene D N I * 44.3 25.6 I * 59.4 32.9 I 1.3 0.3 L16894 “Mus musculus Cyclophilin C (CyCAP) mRNA, complete cd gene D N I * 8.1 15.9 I * 13.9 11.72 D 1.3 0.2 U22031 “Mus musculus 205 proteasome subunit Lmp7 (Lmp7d all gene A N I * ˜3 3.2 15.7 I * ˜23.4 11.11 D 1.4 0.2 U06924 “Mus musculus signal transducer and activator of transcri gene C N I * ˜31.5 15.3 I * ˜24.8 12.16 D 1.3 0.1 X04653 Mouse mRNA for Ly-6 alloantigen (Ly-6E.1) geneD N I 8.1 12.3 I 6.6 8.95 D 1.2 0.2 U15636 “Mus musculus GTP binding protein (GTP2) mRNA, compl gene A N I * ˜21.5 10.3 I * ˜31.4 14.96 MI 1.5 0.2 M86829 “Mus musculus (crg-2) mRNA, complete cds” gene A N I * ˜19.9 9.46 I * ˜53.4 23.9 I 2.7 2.1 U19119 “Mus musculus G-protein-like LRG-47 mRNA, complete cd gene B N I * 17.7 8.9 I * ˜20.2 10.29 NC 0 0 L04262 “Mus musculus (clones p10a-[1.5n, 1.7]b and pG4-14)lysy gene D N I I 11.1 8.27 I 13.2 10.28 NC 0 0 AA059700 mj77g08.r1 Soares mouse p3NMF19.5 Mus musculus cDNA est D N I 5.1 8.12 I 5 7.85 NC 0 0 L39223 “Mus musculus apolipoprotein D (apoD) mRNA, complete gene A N I * ˜16.7 7.94 I * ˜7.3 2.74 D 2.3 0.8 M27034 “Mouse MHC class 1 D-region cell surface antigen (D2d) g gene D N I 11.2 7.51 MI 9.7 6.13 NC 0 0 M55637 “Mus musculus HAM1 gene, complete cds” gene D N I * ˜15.8 7.3 I * 13.3 5.94 NC 0 0 M19681 “Mouse platelet-derived growth factor-inducible protein (J gene D N I 8.9 7.04 I * 11.1 9.51 I 1.2 0.1 U44731 “Mus musculus putative purine nucleotide binding protein gene B N I * ˜13.3 6.15 I * ˜13.2 6.08 NC 0 0 U27838 “Mus musculus glycosyl-phosphatidyl-inositol-anchored p gene A N I * ˜13.3 5.99 I * ˜12.7 5.65 NC 0 0 AA013783 mh13a03.r1 Soares mouse placenta 4NbMP13.5 14.5 Mus est D N I * ˜13.3 5.78 I * 9 3.55 D 1.4 0.2 L32973 “Mouse thymidylate kinase homologue mRNA, complete c gene A N I * ˜12.8 5.75 I * ˜39.7 18.53 I 3.1 2.5 U47737 “Mus musculus thymic shared antigen-1 (TSA-1) gene, cc gene C N I 3.5 5.64 I 3.2 4.55 NC 0 0 X14194 Mouse mRNA for entactin gene A N I 8.8 5.61 I 6.8 3.75 D 1.3 0.1 D13664 Mouse mRNA for osteoblast specific factor 2 (OSF-2) gene D N I 8.8 5.35 I 7.5 4.21 D 1.2 0.1 X61172 Mouse mRNA for alpha-mannosidase II gene B N I * 1.1 5.01 I * 10.1 4.48 NC 0 0 X95580 M. musculus mRNA for hypoxia-inducible factor I alpha gene C N I * ˜11.1 4.74 I * ˜11.9 5.21 NC 0 0 X07699 Mouse nucleolin gene gene B N I * 8.9 4.64 I * 11.9 6.9 I 1.3 0.1 U15635 “Mus musculus IFN-gamma induced (Mg11) mRNA, compl gene A N I * ˜10.5 4.39 I ˜13.8 6.23 NC 0 0 Y00769 Murine mRNA for integrin beta subunit gene A N I 4.5 4.31 I 4.6 4.37 NC 0 0 D14571 “Mouse mRNA for PEBP2b2 protein, complete cds” gene A N I 10.2 4.24 I * 11.6 5.02 NC 0 0 D78188 Mouse mRNA for SCID complementing gene 2 gene A N I 9.3 4.2 I 15.8 8.27 I 1.7 0.4 Z30970 M. musculus (Balb/C) TIMP-3 gene for metalloproteinase-3 gene A N I * 8.6 3.95 I * 11.9 6.14 MI 1.4 0.1 U43084 “Mus musculus glucocorticoid-attenuated response gene 1 gene C N I * ˜9.5 3.91 I * ˜33.5 15.85 I 3.5 2.7 D63902 “Mouse mRNA for estrogen-responsive finger protein, com gene C N I * ˜8.6 3.78 I * ˜10.3 4.74 NC 0 0 W55140 est A Y I 7.9 3.77 I 8.9 4.52 NC 0 0 X16151 Mouse mRNA for early T-lymphocyte activation 1 protein gene A N I 4.4 3.75 I 6.1 6.79 I 1.4 0.3 X56548 M. musculus Np-b mRNA for purine-nucleoside phosphoryla gene A N I 4.9 3.43 I 4.5 2.91 NC 0 0 L38847 “Mus musculus hepatoma transmembrane kinase ligand (I- gene A N I * ˜8.7 3.43 I * ˜5.9 1.9 MC 1.5 0.1 U16162 “Mus musculus prolyl 4-hydroxylase alpha(I)-subunit mRNA gene A N I 4.1 2.98 I 2.4 0.77 D 1.7 0.6 D49382 “Mouse Nedd5 mRNA for DIFF6- or CDC3,10,11,12-like p gene A N I 5.4 2.97 I 6.3 3.84 NC 0 0 U65313 Mus musculus ras-GTPase-activating SH3-domain binding gene C N I 6.6 2.96 I 7.1 3.39 NC 0 0 D90225 Mouse mRNA for OSF-1 gene C N I 4.3 2.87 I 3.2 1.5 D 1.3 0.2 X64070 M. musculus gene for cation-dependent mannose-6-phosp gene D N I * ˜7.8 2.84 I * ˜9.1 3.57 NC 0 0 M60474 “Mouse myristoylated alanine-rich C-kinase substrate (MAF gene D N I 4.6 2.81 I 3.1. 1.13 D 1.5 0.3 U60329 “Mus musculus proteasome activator PA28 beta subunit r gene C N I 3.9 2.79 I 3.8 2.58 NC 0 0 M33212 “Mouse nucleolar protein NC38 mRNA, complete cds” gene A N I 3.9 2.78 I 4.7 3.96 I 1.2 0.1 M91380 “Mus musculus TGF-beta-inducible protein (TSC-36) mRN gene A N I 4 2.78 I 3.9 2.63 NC 0 0 M26071 “Mouse tissue factor (mtf) mRNA, complete cds” gene A N I * 6.8 2.74 I * 8.5 3.88 NC 0 0 M63630 “Mus musculus predicted GTP binding protein (IRG-47) mf gene D N I * ˜7.2 2.74 I * ˜7.5 2.92 NC 0 0 U63323 “Mus musculus translation initiation factor (Eif4g2) mRNA gene C N I 4 2.73 I 4.2 3.01 NC 0 0 AA162233 mn44h04.r1 Beddington mouse embryonic region Mus mu est C N I * ˜7.4 2.67 I * ˜8.4 3.23 NC 0 0 D13003 “Mouse mRNA for reticulocabin, complete cds” gene C N I 5.2 2.67 I 4.6 2.13 NC 0 0 U12763 “Mus musculus OX40 ligand (ox401) mRNA, complete cds” gene D N D * ˜7.0 2.65 D ˜7.0 2.62 NC 0 0 U16740 “Mus musculus capping protein alpha 1 subunit mRNA, pa gene A N I 5.1 2.56 I 5.7 3.11 NC 0 0 W66636 me22g10.r1 Soares mouse embryo NbME13.5 14.5 Mus est A N I * 6.9 2.55 I * 10.2 4.56 I 1.5 0.2 M88242 Mouse glucocortoid-regulated inflammatory prostaglandin gene D N I ˜7.0 2.51 I * ˜39.0 18.23 I 5.6 7.2 X70058 M. musculus cytokine gene gene D N I 3.6 2.48 I 5.1 5.17 I 1.4 0.4 X70296 M. musculus PN-1 mRNA for protease-nexin 1 gene B N I 4.3 2.43 I 3.1 1.22 D 1.4 0.1 U33626 “Mus musculus PML isoform 1 (Pm1) mRNA, complete cds gene B N I * 5.1 2.43 I 3.2 0.93 D 1.6 0.2 U60328 “Mus musculus proteasome activator PA2B alpha subunit gene C N I * 3.7 2.42 I 3.3 1.87 NC 0 0 AA022526 mg54a04.r1 Soares mouse embryo NbMEt3.5 14.5 Mus m est B N I * 3.4 2.42 I * 2.6 1.26 D 1.3 0.2 X16319 Mouse mRNA for 54K subunit of signal recognition particle gene C N I * ˜6.7 2.4 I * ˜14.4 6.74 I 2.2 0.6 X89650 M. musculus mRNA for Rab7 protein gene B N I 4.6 2.4 I 4.6 2.36 NC 0 0 W63809 “md84a12.r1 Soares mouse embryo NbME13.5 1.4.5 Mus est D N I * 5.9 2.4 I 5.6 2.17 NC 0 0 M21285 “Mouse stearoyl-CoA desaturase gene, exon 6” gene A N I 3.9 2.39 I 2.3 0.67 D 1.7 0.4 X56304 Mouse mRNA for tenascin gene A N I 3.2 2.38 I 3.1 2.3 NC 0 0 D85414 “House mouse; Musculus domesticus embryo neural precu gene C N I 4.4 2.33 I 3.8 1.72 NC 0 0 U20532 “Mus musculus p45NF-E2 related factor 2 (Nrf 2) mRNA, gene A N I * ˜6.8 2.32 I * ˜5.8 1.77 NC 0 0 M33960 “Mouse plasminogen activator inhibitor (PAI-1) mRNA, co gene A N I 2.6 2.3 I 5.4 11.64 I 2.1 2.6 XS9990 M. musculus alpha-catenin gene for alpha-catenin gene A N I 4 2.24 I 3.7 1.86 NC 0 0 U37720 “Mus musculus CDC42 mRNA, complete cds” gene A N I 3.9 2.23 I 3.9 2.13 NC 0 0 L02526 “Mouse protein kinase (MEK) mRNA, complete cds gene D N I 4.2 2.23 I 3.5 1.5 NC 0 0 AA030569 m126g10.r1 Soares mouse embryo NbME13.5 14.5 Mus n est B N MD ˜6.6 2.17 NC 0 0 NC * 0 0 AA072961 “mm80b02.r1 Stratagene mouse embryonic carcinomaRA est C N I * ˜6.3 2.16 I * ˜5.2 1.54 NC 0 0 M87276 Mouse thrombospondin 1 mRNA, complete cds” gene A N I 3.3 2.14 I 4.9 4.91 I 1.5 0.4 D17666 “Mousese gene for mitochondrial stress-70 protein (PBP74/ gene D N I 3.8 2.13 I 3.5 1.77 NC 0 0 M86736 “Mouse acrogranin mRNA, complete cds” gene D N I 3.2 2.1 I 2.6 1.19 D 1.2 0.1 L02918 “Mouse procollagen type V alpha 2 (Col5a-2) mRNA, com gene D N I I 2.7 2.06 I 2.1 1 D 1.3 0.2 L20276 “Mouse biglycan (Bgn) mRNA, complete cds” gene A N I 2.1 2.01 I 1.8 1.03 D 1.2 0.2 M22479 “Mouse tropomyosin isoform 2 mRNA; complete cds” gene A N I 2.8 1.99 I 3 2.42 NC 0 0 U35142 “Mus musculus retinoblastoma-binding protein (mRbAp46 gene A N I 3.7 1.97 I 3.1 1.25 D 1.2 0.1 X52574 Mouse mRNA from Mov10 locus gene B N I 4.6 1.95 I 3 0.76 D 1.5 0.2 U14172 “Mus musculus p162 protein mRNA, complete cds” gene B N I * 6 1.93 I * 7.3 2.64 MI 1.2 0 X80937 M. musculus mRNA for RIP1 protein gene B N MI * ˜5.9 1.86 * ˜5.7 1.71 NC 0 0 U27830 “Mus musculus mSTI1 mRNA, complete cds” gene A N I 2.8 1.84 I 2.8 1.87 NC 0 0 AA138777 “mq40g12.r1 Barstead MPLRB1 Mus musculus cDNA clon est D N I 3.7 1.82 I 3.9 2.01 NC 0 0 L12447 “Mus musculus insulin-like growth factor binding protein 5 gene A N I 3.3 1.82 I 2.7 1.14 NC 0 0 M36332 “Mouse insulin-like growth factor II (IGF-II) gene, exons 5 gene D N I 2.8 1.82 I 2.1 0.74 D 1.4 0.3 L18888 “Mus musculus calnexin mRNA, complete cds” gene C N I 5 1.8 I 4.6 1.47 NC 0 0 M21065 “Mouse interferon regulatory factor 1 mRNA, complete cc gene D N I * ˜5.6 1.79 I * ˜11.3 5 I 2 0.6 L07918 “Mus musculus GDP-dissociation inhibitor mRNA, preferen gene A N I 3.5 1.79 I 3.3 1.47 NC 0 0 M90364 “Mouse (clone PMCAT) beta-catenin mRNA, complete cds gene D N I * ˜5.7 1.78 I * ˜3.9 0.86 NC 0 0 W51428 est A Y I * ˜5.8 1.77 I * ˜5.7 1.73 NC 0 0 A038626 “m193b07.r1 Soares mouse p3NMF19.5 Mus musculus cD est B N MI * 4.3 1.73 I 3.3 0.94 NC 0 0 U37413 “Mus musculus guanine nucleotide-binding protein (Gna11 gene A N I 4.1 1.72 I 4.5 2.09 NC 0 0 M21952 “Mouse macrophage colony-stimulating factor (4 kb) mR gene D N I 3.9 1.71 I 5.7 3.47 I 1.4 0.2 U03283 “Mus musculus C3H cytochrome P450 (Cyp1b1) mRNA, c gene C N I 4 1.7 I 6.9 4.81 I 1.8 0.5 U79550 “Mus musculus Slug zinc finger protein (Slugh) mRNA, co gene C N I 5 1.65 I 4.6 1.42 NC 0 0 U69488 “Mus musculus viral envelope like protein (G7e) gene, cor gene C N I 3.9 1.63 I 3 0.91 NC 0 0 J03776 “Mouse down regulatory protein (rpt-1r) of interleukin 2 r gene A N I * ˜5.4 1.63 I * ˜3.5 0.71 D 1.5 0.1 W62326 md97c08.r1 Soares mouse embryo NbME13.5 14.5 Mus m est A N I * ˜5.4 1.62 I * 2 0.15 D 2.6 0.7 X60672 M. musculus mRNA for radixin gene C N I * ˜5.5 1.61 I * ˜8.8 3.39 NC 0 0 X81323 M. musculus mRNA for tripeptidyl peptidase II gene B N I * ˜5.2 1.56 I * ˜5.6 1.73 NC 0 0 U43844 “Mus musculus cyclin D3 gene, complete cds” gene D N I 3.5 1.55 I 2.6 0.79 D 1.3 0.1 X13605 Murine mRNA for replacement variant histone H3.3 gene B N I 3.2 1.64 I 3.7 2.35 NC 0 0 J04179 “Mouse chromatin nonhistone high mobility group protein gene D N I 3 1.54 I 3.5 2.29 NC 0 0 AA00813 “6mg68g11.r1 Soares mouse embryo NbME13.5 14.5 Mus est D N I 2.6 1.53 I 3.1 2.39 NC 0 0 AA060167 mj72h03.r1 Soares mouse p3NMF19.5 Mus musculus cDNA est B N I * ˜5.2 1.53 NC * 0 0 D 2.2 0.4 M31131 “Mouse neural cadherin (N-cadherin) mRNA, complete cds gene D N I * ˜5.4 1.52 I ˜6.4 2.08 NC 0 0 AA118062 mn07h01.r1 Beddington mouse embryonic region Mus mus est C N I 3.7 1.52 I 3.2 1.14 NC 0 0 M73696 “Murine Givr-1 mRNA, complete cds” gene A N I 4.1 1.51 I 5.9 3.1 I 1.5 0.2 AA003876 mg79c01.r1 Soares mouse embryo NbME13.5 14.5 Mus r est D N I * 4.7 1.51 I * 2.5 0.35 NC 0 0 X53584 “Mouse mRNA for HSP60 protein (clones 3T3-7, -9, and- gene B N I 2.8 1.49 I 3 1.67 NC 0 0 U51992 “Mus musculus interferon stimulated gene factor 3 gamma gene B N I * ˜5.2 1.48 I * ˜3.5 0.63 NC 0 0 D85904 “Mouse mRNA for apg-2, complete cds” gene C N I 3.7 1.47 I 5 2.68 I 1.3 0.1 W97102 “mf61h08.r1 Soares mouse embryo NbME13.5 14.5 Mus m est D N I * ˜5.1 1.47 I * ˜6.7 2.32 NC 0 0 M94087 “M. musculus mATF4 (mTR67) mRNA, complete cds” gene A N I 2.1 1.47 I 1.9 1.05 NC 0 0 U34883 “Mus musculus ATP sulfurylase/APS kinase mRNA, comple gene A N I 4.3 1.47 I 3.2 0.76 D 1.3 0.1 L40406 “Mus musculus heat shock protein (hsp-E71) mRNA, comp gene B N I 3.2 1.47 I 1.5 0.13 D 2.1 0.7 D21297 “Mouse mRNA for peripheral-type benzodiazepine recepto gene C N I 2.5 1.46 I 2.1 0.88 NC 0 0 X56045 Mouse mRNA (clone lambda-19) for hypothetical protein gene A N I 2.9 1.45 I 3.1 1.74 NC 0 0 X17459 Mouse mRNA for J kappa RS-binding protein gene B N I 4.7 1.45 I 4.2 1.14 NC 0 0 AA048974 mj50d06.r1 Soares mouse embryo NbME13.5 14.5 Mus n esy B N I * ˜5.0 1.45 NC * 0 0 NC 0 0 J05287 “Mouse lysosoma; membrane glycoprotein (LAMP2 ) mRN gene D N I * 4.6 14.2 I * 3.5 0.79 MC 1.3 0.1 D42048 “Mouse mRNA for sqalene epoxidase, complete cds” gene B N I 3.2 1.42 NC 0 0 D 3.4 2 W82720 mf07g03.r1 Soares mouse p3NMF19.5 Mus musculus cDNA est B N I 3.6 1.41 I 3.7 1.47 NC 0 0 L35556 “Mus musculus Int-6 mRNA, complete cds” gene A N I 3.1 1.39 I 4.3 2.94 I 1.4 0.2 X80508 M. musculus YAP65 mRNA gene B N I 3.4 1.39 I 3.2 1.18 NC 0 0 AA163272 mr27b12.r1 Soares mouse 3NbMS Mus musculus cDNA c est D N I 3.8 1.37 I 3.2 0.96 I 0 0 U20326 “Mus musculus cellular nucleic acid binding protein mRNA gene A N I 2.9 1.36 I 3.4 1.88 NC 0 0 D28599 “Mouse mRNA for proteoglycan, PG-M” gene A N I * 5 1.36 I * 5.7 1.75 NC 0 0 X61232 Mouse mRNA for carboxypeptidase H gene A N I 3.5 1.36 NC 0 0 NC 0 0 D26089 “Mouse mRNA for mcdc21 protein, complete cds” gene C N I 4.1 1.35 I 5.1 2.09 NC 0 0 L09104 “Mus musculus glucose phosphate isomerase mRNA, 3′ er gene A N I * 2.5 1.35 I 1.7 0.35 D 1.5 0.4 X14425 Mouse mRNA for profilin gene C N D 1.9 1.34 D 2.2 2.06 NC 0 0 M97635 M. musculus helix-loop-helix transcription factor sequence gene C N I 4.6 1.29 I 5.1 1.62 NC 0 0 AA097203 mm35h09.r1 Stratagene mouse skin (#937313) Mus musc est C N I * ˜4.1 1.28 I * ˜3.4 0.9 NC 0 0 D42124 “Mouse mRNA for MafK1 complete cds” gene A N I 4.5 1.27 I 6.1 2.28 NC 0 0 AA165782 mt74e04.r1 Soares mouse lymph node NbMLN Mus musculus est D N I 3.4 1.27 I 3.3 1.14 NC 0 0 M13227 Mouse enkephalin mRNA gene D N I * 4.6 1.27 I * 3.5 0.72 NC 0 0 L07803 “Mouse thrombospondin 2 (THBS2) mRNA, complete cds” gene A N I 2.6 1.27 I 1.9 0.49 D 1.4 0.2 LJ1613 “Mus musculus proteasome (Imp2) gene, complete mRNA gene C N I * ˜4.3 1.26 I * ˜3.5 0.86 NC 0 0 AA118758 mp59h02.r1 Soares 2NbMT Mus musculus cDNA clone 573 est D N I * 4.3 1.25 I * 4.8 1.59 NC 0 0 W10645 ma39f12.r1 Soares mouse P3NMF19.5 Mus musculus cD est D N I * ˜4.8 1.25 NC * 0 0 NC 0 0 DB6729 “Mouse mRNA for topoisomerase-inhibitor suppressed, co gene D N I 2.8 1.24 I 3.9 2.81 I 1.4 0.3 W71889 “meA6b06.r1 Soares mouse embryo NbME13.5 14.5 Musr est A N I 2.9 1.23 I 2.7 1 NC 0 0 D86726 “Mouse mRNA for mMIS5, complete cds” gene C N I 2.8 1.22 I 2.6 1.03 NC 0 0 AA016858 mh35f03.r1 Soares mouse placenta 4NbMP.13.5 14.5 Mus est B N I * ˜4.6 1.22 I * ˜3.0 0.48 MC 1.5 0.1 X77952 M. musculus (CD1) endoglin mRNA gene B N I * ˜4.7 1.21 I * ˜4.6 1.19 NC 0 0 AA145371 mr10b08.r1 Soares mouse 3NbMS Mus musculus cDNA clo est D N I * 4.1 1.21 I * 3.9 1.05 NC 0 0 X92665 M. musculus mRNA for ubiquitin-conjugating enzyme UbcM gene B N MI 4 1.2 I 3.5 0.92 NC 0 0 L29454 “Mouse fibriliin (Fbn-1) mRNA, complete cds” gene A N I 2.6 1.2 I 1.3 0.07 D 2 0.9 U70622 “Mus musculus lysophosphatidic acid receptor (vzg-1) mR gene A N I * ˜4.5 1.19 I * ˜4.8 1.33 NC 0 0. D10061 Mouse mRNA for DNA topoisomerase I gene A N I * ˜4.4 1.18 I * ˜7.1 2.63 NC 0 0 X53753 Mouse mRNA for nonmuscle tropomyosin 5 gene A N I 2.3 1.18 I 2 0.76 NC 0 0 U46690 “Mus musculus ATP-dependent RNA helicase mRNA, partia gene C N I 2.7 1.18 I 2.1 0.51 D 1.3 0.1 D78645 “Mouse mRNA for 78 kDa glucose-regulated protein, com gene D N I 2.5 1.17 I 2.7 1.44 NC 0 0 X16857 Mouse mRNA f4HSP86 heat-shock protein gene D N I 3.4 1.16 I 5.4 3 I 1.6 0.3 U25633 “Mus musculus tumor-assoclated membrane protein (TMP gene C N I 2.3 1.15 I 2.9 2.11 NC 0 0 U41765 “Mus musculus metalloprotease/disintegrin/cysteine rich gene B N I * ˜4.4 1.14 I * ˜4.9 1.39 NC 0 0 AA038511 m185h01.r1 Soares mouse p3NMF19.5 Mus musculus cDNA est A N I 2.2 1.14 I 1.9 0.69 NC 0 0 AA123463 mn23e03.r1 Eddington mouse embryonic region Mus mu est C N I 2.4 1.13 I 2.9 1.89 NC 0 0 M62867 “Mouse Y box transcription factor (MSY-1) mRNA, comple gene A N I 2.1 1.11 I 3 3.23 NC 0 0 X58196 M. musculus H19 mRNA gene A N I 1.9 1.11 I 1.4 0.29 D 1.3 0.4 U10406 “Mus musculus capping protein beta-subunit isoform 1 mF gene A N I 2.2 1.1 I 2.4 1.35 NC 0 0 AA002277 mg42b03.r1 Soares mouse embryo NbME13.5 14.5 Mus est B N I 3.3 1.1 I 3 0.87 NC 0 AA139989 mq95e05.r1 Stratagene mouse heart (#937316) MuS musc est A N I * 3.9 1.1 I * 3.1 0.63 NC 0 0 Z37110 M. musculus mRNA for cyclin G gene B N I * 4 1.09 I * 5.5 2.02 NC 0 0 J05185 “Mouse protein disulfide isomerase (ERP59) mRNA, compL gene A N I 2 1.09 I 2 1.06 NC 0 0 M86390 Mus domesticus moesin mRNA, 3′ end” gene D N I 4 1.08 I 4.9 1.64 NC 0 0 Z31553 “M. musculus (129/Sv) Cctb mRNA for CCT (chaperonin co gene B N I 2.3 1.08 I 2.3 1.07 NC 0 0 U75680 “Mus musculus histone stem-loop binding protein (SLBP) gene C N I * ˜4.3 1.08 I * ˜3.6 0.72 NC 0 0 U77630 “Mus musculus adrenomedullin precursor mRNA, complete gene C N I 3.1 1.08 NC 0 0 D 4 2.3 X99915 “M. musculus HMGI-C gene, exon 1, and joined CDS” gene B N I 3.2 1.06 I 4.8 2.64 I 1.5 0.2 M13685 “Mouse prion protein (PrP) mRNA, complete cds” gene A N I 2.9 1.06 I 3.5 1.67 MI 1.2 0.1 M64640 “Mouse Mov-34 36 kD protein gene, exon 7” gene D N I 2.9 1.04 I 3 1.19 NC 0 0 X63100 M. musculus mRNA for connexin45 gene B N I * ˜4.3 1.04 I * ˜4.1 0.92 NC 0 0 X58876 Murine mdm2 mRNA for mdm2 protein gene B N I * ˜4.2 1.03 I I * ˜4.2 1.03 NC 0 0 M75122 “Mouse acid beta-galactosidase (GLB-1) gene, exon 16” gene D N I * ˜4.3 1.01 I * ˜2.8 0.38 NC 0 0 M91458 “Mus musculus sterol-carrier protein X mRNA, complete c gene A N I 4.1 1 I 4.5 1.24 NC 0 0 J03880 “Mouse UDP-galactose:N-acetylglucosamine galactosyltrar gene D N I * 3.8 1 I * 3.5 0.85 NC Q 0 AA111149 “mp10e11.r1 Life Tech mouse embryo 8 5dpc 10664019 est C N I 2.2 1 I 2.1 0.79 NC 0 0 X979982 “M. musculus mRNA for poly(C)-binding protein, splice vari gene A N I 2.4 1 NC 0 0 D 1.6 0.4 L25069 “Mouse catalase mRNA, complete cds” gene D N I 3.7 0.99 I 3.4 0.8 NC 0 0 W18503 “mb88b08.r1 Soares mouse p3NMF19.5 Mus musculus cD est D N I 3.1 0.99 I 2.4 0.48 D 1.3 0.1 M70641 “Mouse FISP-12 protein (fisp-12) gene, complete cds” gene D N I 2.2 0.98 I 3.7 3.84 I 1.7 0.9 W48519 est A Y I * ˜4.1 0.98 I * ˜6.1 2.05 NC * 0 0 AA003323 mg51g09.r1 Soares mouse embryo NbME13.5 14.5 Mus m est A N I 2.5 0.98 I 1.9 0.36 D 1.4 0.2 AA153032 “mr17e03.r1 Soares mouse 3NbMS Mus musculus cDNA est D N D ˜4.0 0.97 D ˜4.0 0.97 NC 0 0 Z25524 “M. musculus integrin assoclated protein mRNA, complete gene D N I * ˜4.2 0.97 I * ˜3.0 0.44 NC 1.4 0.1 D12713 “Mouse DNA for MSEC66, complete cds” gene C N I * 4 0.96 I * 4 0.96 NC 0 0 X81058 M. musculus tex261 mRNA gene C N I 3.2 0.96 I 2.9 0.76 NC 0 0 AA110543 m196e01.r1 Stratagene mouse kidney (#937315) Mus musc est C N I 2.9 0.95 I 3.2 1.17 NC 0 0 W20828 mb91g06.r1 Soares mouse p3NMF19.5 Mus musculus cDN est D N D 1.9 0.95 D 1.4 0.32 I 1.3 0.3 L13968 “Mouse delta/YY1/NF-E1/UCRBP transcription factor exor gene D N I * ˜4.1 0.93 I * ˜4.0 0.91 NC 0 0 M58566 “Mouse TJS11 primary response gene, complete cds” gene A N I 3.4 0.93 MI 2.6 0.49 MC 1.3 0.1 U05245 “Mus musculus BALB/c invasion inducing protein (Tiam-1) gene C N I * ˜3.8 0.92 NC * 0 0 NC 0 0 Z11997 M. musculus mRNA for non-histone chromosomal high-mo gene C N I * ˜4.1 0.9 I * ˜3.1 0.48 NC 0 0 U40375 “Mus musculus Supt6h mRNA, complete cds” gene C N I * 3.9 0.89 I * 2.7 0.38 NC 0 0 L42293 “Mus musculus acyl-coenzyme A:cholesterol acyltransfera” gene A N I 3 0.88 I 4.5 2.14 I 1.5 0.2 W62742 md71c06.r1 Soares mouse embryo NbME13.5.14.5 Mus mL est A N I * 3.6 0.88 I * 4.8 1.65 NC 0 0 D86232 “House mouse; Musculus domesticus mRNA for Ly-6C var gene D N I * 3.4 0.88 I * 3.2 0.75 NC 0 L29441 “Mus musculus mRNA, complete cds” gene A N I 2.7 0.88 I 2.1 0.41 D 1.3 0.1 W98349 mg13a01.r1 Soares mouse embryo NbME13.5 14.5, Mus r est A N MI * 3.7 0.88 I 0 0 NC 0 0 Z17804 M. musculus p120 gene gene B N I * ˜3.9 0.88 NC * 0 0 D 1.7 0.2 AA003022 mg39h11.r1 Soares mouse embryo NbME13.5 14.5 Mus mu est D N I * 3.7 0.87 I * 3.7 0.87 NC 0 0 M63114 “Mouse surfeit locus surfeit 4 protein mRNA, complete cd gene A N I 2.4 0.86 I 3 1.53 I 1.2 0.1 AA038437 m185f02.r1 Soares mouse p3NMF19.5 Mus musculus cDNA est B N I 2.7 0.86 I 2.4 0.64 NC 0 0 J00424 “Mouse interferon-beta; 12S fraction mRNA, 3′ end” gene D N I * 3.9 0.86 I * 3 0.46 NC 0 0 AA015026 mh26103.r1 Soares mouse placenta 4NbMP13.5 l4.5 Mus est B N MI * 4 0.86 NC * 0 0 NC * 0 0 X57024 Murine GLUD mRNA for glutamate dehydrogenase gene B N I 3 0.85 I 3.6 1.25 NC 0 0 X59379 Mouse mRNA for amyloid beta precursor (protease nexin 1 gene D N I 2.4 0.85 I 2.6 0.99 NC 0 0 W14540 mb24c01.r1 Soares mouse p3NMF19.5.Mus musculus cD” est D N I * ˜3.9 0.85 NC * 0 0 MC * 3.8 1.3 U20086 “Mus. domesticus nuclear binding factor NF2d9 mRNA, co gene A N I * ˜3.8 0.84 I * ˜3.4 0.66 NC 0 O X63535 M. musculus ufo mRNA gene B N I 2.2 0.84 I 2 0.64 NC 0 0 U79716 Mus musculus ajuba (Ajuba) mRNA, complete cds” gene C N I 2.9 0.84 NC 0 0 NC 1.4 0.1 X59728 M. musculus mRNA for gas5 growth arrest specific protein gene B N I 2.8 0.83 I 3.3 1.21 NC 0 0 AA124715 mq81h11.r1 Stratagene mouse melanoma (#937312) Mus m est C N I 2.1 0.83 I 1.9 0.62 NC 0 0 U18869 “Mus musculus mitogen-responsive 96 kDa phosphoprotei gene C N I * 3.5 0.83 I * 3 0.59 NC 0 0 X90875 M. musculus mRNA for FXR1 protein gene B N I * ˜3.7 0.82 I * ˜5.8 1.88 NC 0 0 J03484 “Mouse laminin B2 chain mRNA, complete cds” gene D N I 3.1 0.81 I 2.6 0.5 NC 0 0 AA118121 “mn07h07.r1 Beddington mouse embryonic region Mus mus est A N I 3.1 0.81 I 2.5 0.47 NC 0 0 X66032 M. musculus mRNA for cyclin B2 gene B N I * ˜3.6 0.8 I * ˜4.2 1.08 NC 0 0 X80686 M. musculus mRNA for C5 component of protease gene D N D 2 0.8 D 1.6 0.37 MI 1.2 0.1 AA144078 mq53g12.r1 Soares 2NbMT Mus musculus cDNA clone 58 est A N I 3.9 0.8 NC 0 0 MC 1.9 0.3 M72414 “Mouse microtubule-associated protein 4 (MAP4) mRNA gene A N I 3 0.8 I 0 0 MC 1.5 0.2 XS9520 “Mouse CCK gene for cholecystokinin, exon 1” gene D N I 2.5 0.79 I 3.8 2.09 I 1.5 0.3 Y00094 Mouse mRNA for ras-related YPT1 protein gene B N I 2.2 0.78 I 2.7 1.42 NC 0 0 M32745 “mouse transforming growth factor beta-3 mRNA, comple gene A N I 2.6 0.78 I 1.6 0.17 D 1.6 0.2 D87663 “House mouse; Musculus domesticus mRNA for 14-3-3 ep gene B N I 2 0.77 I 2.2 0.92 NC 0 0 U53456 “Mus musculus protein phosphatase 1cgamma (PP1cgamr gene D N I 2.4 0.77 I 2.5 0.79 NC 0 0 AA103538 “mo40h06.r1 Life Tech mouse embryo 15 5dpc 10667012 est C N I * 3.7 0.77 NC * 0 0 NC 0 0 M95200 “Mouse vascular endothelial growth factor mRNA, comple gene A N I 3.1 0.76 I 3.7 1.17 NC 0 0 X83577 M. musculus mRNA for K-glypican gene B N I 3.1 0.76 MI 2.3 0.33 NC 0 0 AA072911 mm72h12.r1 Stratagene mouse macrophage (#937306) M est C N I * 3.4 0.75 I * 4.1 1.13 NC 0 0 U14648 “Mus musculus putative myelin regulatory factor 1 mRNA gene D N I 2.6 0.75 I 2.7 0.88 NC 0 0 L22482 “Mus musculus HIC-5 mRNA, complete cds” gene A N I 2.1 0.75 I 2.1 0.82 NC 0 0 M83749 “Mouse D-type cyclin (CYL2) mRNA, complete cds” gene D N I 2.4 0.75 I 2.4 0.8 NC 0 0 U47543 “Mus musculus NGFI-A binding protein 2 (NAB2) mRNA, c gene C N MI 3 0.75 I 2.3 0.38 NC 0 0 M211T7 “Mouse interferon-induced Mx1 protein gene conferring s gene A N I * 3.7 0.74 I * 7.8 2.97 I 2.1 0.5 AA002759 mg45a11.r1 Soares mouse embryo NbME13.5 14.5 Mus r est B N I 2.6 0.74 I 3.3 1.43 I 1.3 0.1 W55556 est A Y I * ˜3.1 0.74 I * ˜3.3 0.81 NC 0 0 U07617 “Mus musculus Grb2 adaptor protein (grb2) mRNA, comp gene B N I * 3.6 0.74 I * 3.2 0.58 NC 0 0 AA032596 mi29e04.r1 Soares mouse embryo NbME13.5 14.5 Mus m est B N I 2.6 0.74 I 2 0.35 NC 0 0 L12030 “Mus musculus cytokine (SDF-1-beta) mRNA, complete cc gene B N I 2.5 0.74 I 1.7 0.2 D 1.5 0.2 X52046 M. musculus COL3A1 gene for collagen alpha-I gene B N I 1.7 0.74 I 1.3 0.15 D 1.3 0.3 X78709 M. musculus NRF1 mRNA gene B N I 2.8 0.74 NC 0 0 D 1.7 0.3 X52101 Mouse mRNA for a 25kDa nuclearprotein found in murine gene B N I * 3 0.74 NC * 0 0 NC 0 0 U37353 “Mus musculus proteinphosphatase 2A B′alpha3 reguato gene B N I * ˜3.7 0.73 I * ˜5.1 1.41 MI 1.4 0.1 L22355 “Mus musculus vascular adhesion cell molecule-1 (VCAM1 gene D N I * 3.1 0.73 I * 3.1 0.73 NC 0 0 AA153021 mq67e05.r1 Soares 2NbMT Mus musculus cDNA clone 583 est D N I * ˜3.3 0.72 I * ˜11.9 5.46 I 3.6 2 W21013 mb80g05.r1 Soares mouse p3NMF19.5 Mus musculus cD est D N D 1.8 0.72 D 2 0.92 NC 0 0 W08454 mb50a10.r1 Soares mouse p3N.MF19.5 Mus musculus cD est C N I 2.5 0.72 I 1.9 0.31 D 1.3 0.1 U16163 “Mus musculus prolyl 4-hydroxylase alpha(II)-subunit mRN gene A N I 2.3 0.72 NC 0 0 D 1.7 0.4 Y07836 M. musculus mRNA for basic-helix-loop-helix protein gene C N I * ˜3.7 0.72 NC * 0 0 NC 0 0 W55283 est A Y I * ˜3.4 0.71 I * ˜4.6 1.27 NC 0 0 L00681 “Mus musculus Unp mRNA, complete cds” gene A N I 2.9 0.71 I 2.1 0.27 MI 1.4 0.1 W90947 mf82f08.r1 Soares mouse embryo NbME13.5 14.5 Mus mu est A N MI * ˜3.5 0.71 NC * 0 0 NC * 0 0 X51397 Murine MyD88 mRNA induced by interleukin-6 gene B N I * 3.1 0.7 I * 5.1 1.98 NC 0 0 D90151 “Mouse mRNA for CArG-binding factor-A, complete cds” gene D N I 1.9 0.7 I 2.3 1.29 NC 0 0 D38379 Mouse mRNA for pyrubate kinase M gene B N I 1.6 0.7 I 1.4 0.39 NC 0 0 J03520 “Mouse tissue plasminogenactivator mRNA, complete cd gene A N I 3 0.7 I 2.4 0.36 NC 0 0 M69260 “Mouse lipocortin I gene, exon 13” geneD N I 1.9 0.69 I 3.1 2.83 I 1.6 0.8 U06670 “Mus musculus very low densitylipoprotein receptor mRN geneA N I 3.4 0.69 I 1.8 0.1 D 1.9 0.3 D87901 “Mouse mRNA for ARF4, complete cds” gene C N I 1.9 0.68 I 2.2 1.06 NC 0 0 AA058163 mj59c08.r1 Soares mouse embryo NbME13.5 14.5 Mus rr est B N D 1.6 0.68 0 1.7 0.87 NC 0 0 Z14044 M. musculus mRNA for valosin-containing protein gene B N I 2.4. 0.68 I 2.5 0.73 NC 0 0 W11011 ma47a11.r1 Soares mouse p3NMF19.5 Mus musculus cD est C N I * ˜3.4 0.68 I * ˜3.3 0.65 NC * 0 0 X74438 M. musculus PTP35 mRNA gene A N I * 3.2 0.68 I * 2.9 0.56 NC 0 0 M74753 “Mouse myosin heavy chain mRNA, 3′ flank” gene A N I * ˜3.6 0.68 I * 0 0 NC 0 0 X64414 M. musculus mRNA for low density lipoprotein receptor bene B N I 2.4 0.68 NC 0 0 D 3 1.5 D50086 “Mouse mRNA for neuropilin, complete cds” gene B N I 3.3 0.67 I 5.4 1.91 NC 0 0 X14432 Mouse mRNA for thrombomodulin gene B N I 2.8 0.67 I 4.1 1.58 NC 0 0 U17162 “Mus musculus bcl-2 binding protein BAG-1 m NA, comp gene A N I 2.5 0.67 I 2.7 0.82 NC 0 0 U42383 “Mus musculus fibroblast growth factor inducible gene 13 gene C N I 2.3 0.67 I 2.2 0.63 NC 0 0 AA114648 mn04b05.r1 Beddington mouse embryonic region Mus mu est C N I * 2.8 0.67 I * 2.6 0.57 NC 0 0 U28138 “Mus musculus dishevelled-1 proten (DvI1) gene, compe gene A N I 3.1 0.67 NC 0 0 D 2 0.3 M72394 “Mouse calcium-dependent phosopholipid binding protein ( gene B N I 2.8 0.66 I 3.5 1.13 I 1.2 0.1 AA048304 mj28a07.r1 Soares mouse embryo NbME13.5 14.5 Mus mu est A N I 3 0.66 I 3.1 0.71 NC 0 0 M73329 “Mouse phospholipase C-alpha (PLC-alpha) mRNA, comple gene A N I 2 0.66 I 1.8 0.44 NC 0 0 M28723 “Mus musculus housekeeping-tupe protein (MER5) mRNA, gene D N I * 3 0.65 I * 2.4 0.36 MC 1.2 0.1 L36314 “Mus musculus GDP dissociation inhibitor beta mRNA, con gene A N I 2.1 0.64 I 2.3 0.84 NC 0 0 L27453 “Mus musculus PBX1B mRNA, complete cds” gene C N I * 3.4 0.64 I * 3.2 0.55 NC 0 0 M32486 “Mouse 19.5 mRNA, complete cds” gene D N I 3.1 0.64 I 2.5 0.39 NC 0 0 U39302 “Mus musculus 26S proteasome subunit 4 ATPase mRNA gene C N I 2.3 0.63 I 3 1.28 I 1.3 0.1 AA002621 mg55f02.r1 Soares mouse embryo NbME13.5 14.5 Mus mu est B N I 1.7 0.63 I 1.7 0.62 NC 0 0 M18186 “Mduse 84 kD heatshock protein mRNA, complete cds” gene D N I 1.7 0.63 I 1.6 0.48 NC 0 0 L22143 “Mouse insulin-like growth factor II/cation independent m gene A N L 2.7 0.63 I 1.6 0.1 D 1.7 0.2 AA023796 mh65e02.r1 Soares mouse placenta 4NbMP13.5 14.5 Mu est B N I 2.9 0.62 I 4.2 1.42 MI 1.4 0.1 W33838 mc55c11:rl Soares mouse embryo NbME13.5 14.5 Mus mu est D N I * 2.8 0.62 I * 3.3 0.9 NC 0 0 AA104459 mo55a03.r1 Life Tech mouse embryo 8 5dpc 10664019 Mu est C N I 2.6 0.62 I 2.8 0.78 NC 0 0 J02652 “Mouse malate NADP oxidoreductase mRNA, complete cds” gene D N I * ˜3.3 0.62 I * ˜3.6 0.72 NC 0 0 X60203 M. musculus mRNA for FK506-binding protein gene B N I 2 0.62 I 2 0.7 NC 0 0 W37000 “mb65311.r1 Soares mouse p3NMF19.5 Mus musculus c[ est A N I 1.7 0.62 I 1.7 0.67 NC 0 0 U43921 “Mus. musculus ubi-d4 mRNA, complete cds” gene A N I * 2.6 0.62 I * 1.8 0.18 NC 0 0 X80478 M. musculus AEBP1 mRNA gene B N L 1.9 0.62 I 1.3 0.11 D 1.4 0.3 AA059527 mj61f10.r1 Soares mouse embryo NbME13.5 14.5 Mus mus est A N I * ˜3.3 0.62 NC * 0 0 NC 0 0 U11274 “Mus musculus clone pmuAUF1-3 RNA-binding protein AU gene A N I * 3.1 0.62 NC * 0 0 NC 0 0 W96831 mf96h07.r1 Soares mouse embryo NbME13.5 14.5 Mus mi est A N I 3.1 0.61 I 4.9 1.68 NC 0 0 L20294 “Mus musculus GTP-binding protein (mSara) homologue rr gene A N I 2.4 0.61 I 2.7 0.87 NC 0 0 L21707 “Mus musculus receptor tyrosine kinase (MRK) mRNA, cor gene D N I 2.3 0.61 I 2.4 0.69 NC 0 0 X92664 M. musculus mRNA for ubiquitin-conjugating enzyme UbcM gene B N I * 3.2 0.61 I * 3 0.52 NC 0 0 X15052 Mouse mRNA for 3′-end of NCAM-140 and NCAM-180 iso gene B N I * 2.9 0.61 I * 2.5 0.43 NC 0 0 W70905 me23c05.r1 Soares mouse embryo NbME13.5 14.5 Mus r est D N MI * 3.2 0.61 MI * 2.7 0.39 NC 0 0 W6489T md9gb10.r1 Soares mouse embryo NbME13.5 14.5Mus rr est A N I 2.7 0.61 I 2.2 0.36 NC 0 0 U27455 “Mus muscuilus serine palmitoyltransferase LCB2 subunit r gene C N I 2.5 0.61 I 2.1 0.34 NC 0 0 AA047939 “mj23e01.r1 Soares mouse embryo NbME13.5 14.5 Mus. r est B N I 2.8 0.61 I 2.2 0.31 NC 0 0 X53476 Mouse mRNA for non-histone chromosomal protein HMG-1 gene B N I 1.8 0.61 I 2 0.8 NC 0 0 M57999 “Mouse transcription factor NF-kappa-B DNA binding subu gene A N I 2.6 0.6 I 2.1 0.32 NC 0 0 Y00516 Mouse mRNA for aldolase A gene B N I 1.5 0.6 I 1.3 0.19 D 1.2 0.2 W74874 est A Y MI * ˜3.1 0.6 NC * 0 0 NC * 0 0 W29420 “mb99a01.r1 Soares mousep3NMF19.5 Mus musculus cD est B N D 1.5 0.59 D 1.9 1.41 NC 0 0 M26251 “Mouse mRNA encoding vimentin, complete cds” gene A N I 1.5 0.59 I 1.6 0.85 NC 0 0 X79233 M. musculus EWS mRNA gene B N I 2.4 0.59 I 2.7 0.79 NC 0 0 L39879 “Mus musculus ferritin L-subunit gene exons 1-4, complet gene D N I 1.7 0.59 I 1.5 0.31 NC 0 0 AA058163 mj59c08.r1 Soares mouse embryo NbME13.5 14.5.Mus m est B N D 1.6 0.59 MC 1.3 0.24 NC 0 0 D31717 “Mouse MARib mRNA for ribophorin, complete cds” gene C N I 1.8 0.59 MI 1.4 0.17 D 1.3 0.2 W41762 mc65g02.r1 Soares mouse embryo NbME13.5 14.5 Mus m est D N I * 2.9 0.58 I * 3.8 1.08 I 1.3 0.1 X80232 M. musculus mRNA for SIG41 gene C N I 2.9 0.58 I 3.7 1.03 MI 1.3 0.1 X75313 M. musculus (C57B/6) GB-like mRNA gene B N D 1.4 0.57 D 1.4 0.52 NC 0 0 M26270 “Mouse stearoyl-CoA desaturase (SCD2) mRNA, complete gene A N I 1.8 0.57 NC 0 0 D 2.1 1.4 X53333 Mouse mRNA for triosephosphate isomerase (EC 5.3.1.1) gene A N I 1.6 0.57 NC 0 0 D 1.7 1 L47480 “Mus musculus BMPA gene, complete gene A N I * ˜3.2 0.57 NC * 0 0 MC 1.4 0.1 X75014 M. musculus Phox2 mRNA for homeodomain protein gene C N D ˜3.2 0.56 D ˜3.2 0.6 NC 0 0 U58205 Mus musculus Btk locus, alpha-D-galactosidase A (Ags), gene C N I * 2.9 0.56 I * 2.6 0.41 NC 0 0 U31758 “Mus musculus transcriptional regulator RPD3 homdlog mf gene C N I 2.9 0.55 I 6 2.61 I 2.1 0.5 U78103 Mus musculus embryonic ectoderm development protein ( gene C N I 3 0.55 I 3.7 0.85 NC 0 0 AA058163 mj59c08.r1 Soares mouse embryo NbME13.5 14.5 Mus m est B N D 1.6 0.55 D 1.7 0.84 NC 0 0 W29456 mc03e02.r1 Soares mouse p3NMF19.5 Mus muscuus cDNA est D N I * 2.5 0.55 I * 2.5 0.55 NC 0 0 D21252 “Mouse mRNA for OSF-3, complete cds” gene C N I 1.6 0.55 I 1.5 0.44 NC 0 0 AA103356 mo18e02.r1 Life Tech mouse embryo 13 5dpc 10666014 est C N I 2.1 0.55 I 1.9 0.42 NC 0 0 U70662 “Mouse epithelial zinc-finger protein EZF (Zie) mRNA,com gene A N I 2.9 0.55 I 2.5 0.39 NC 0 0 U25708 “Mus musculus CD98 heavy chain mRNA, complete cds” gene B N I 1.9 0.55 I 1.4 0.15 D 1.3 0.2 D31898 “Mouse mRNA for protein tyrosine phosphatase, PTPBR7” gene C N MD 2.9 0.55 NC 0 0 NC 0 0 M15668 “Mus musculus X chromosome-linked phosphoglycerate ki gene A N I 1.6 0.55 NC 0 0 NC 0 0 U35249 Mus musculus CDK-activating kinase assembly factor p3 gene B N I 3.1 0.54 I 4.6 1.32 I 1.5 0.1 AA033153 m137c08.r1 Soares mouse embryo NbME13.5 14.5 Mus mu est A N I 2.9 0.54 I 2.8 0.53 NC 0 0 U35141 “Mus musculus retinobiastoma-binding protein (mRbAp48) gene A N I 1.9 0.54 I 1.6 0.29 NC 0 0 W50167 est A Y I * ˜3.2 0.54 NC * 0 0 NC 0 0 AA120387 mn46h09.r1 Beddington mouse embryonic region Mus mus est A N I * ˜3.2 0.54 NC * 0 0 MC 1.4 0.1 M64404 Mus domesticus interleukin 1 receptor antagonist (IL-1RA gene C N I 2.4 0.54 NC 0 0 D 1.6 0.2 U44426 “Mus musculus D52 (mD52) mRNA, complete cds” gene C N I * ˜3.1 0.53 I * ˜3.9 0.84 NC 0 0 X54149 “Mouse mRNA for MyD118, a myeloid differentiation prime gene B N I 2.8 0.53 MI 3.4 0.81 NC 0 0 U26259 “Mus musculus C2-H2 zinc finger protein mRNA, complete gene A N I * 3 0.53 I * 3.1 0.57 NC 0 0 D14340 “Mouse mRNA for ZO-1, complete cds” gene D N I * ˜3.0 0.53 I * ˜3.1 0.56 NC 0 0 M77174 “Mouse periecan mRNA, complete cds” gene A N I 2.3 0.53 I 1.6 0.15 NC 0 0 M64292 “Mouse T1521 gene, complete cds” gene A N I * 2.9 0.52 I * 3 0.58 NC 0 0 W10377 mb65a02.r1 Soares mouse p3NMF19.5 Mus musculus cD est B N I 1.9 0.52 I 1.4 0.14 D 1.4 0.2 W65920 “me09e10.r1 Soares mouse embryo NbME13.5 14.5 Mus est A N I 1.8 0.52 NC 0 0 D 1.7 0.6 X67644 M. musculus gly96 mRNA gene B N I 2.6/ 0.51 I 4.4 1.78 I 1.7 0.3 Z46757 M. musculus mRNA for high mobiiity group2 pr0tein gene B N MI 2.4 0.51 I 3.8 1.66 I 1.6 0.2 W98592 mg22g03.r1 Soares mouse embryo NbME13.5 14.5 Mus r est B N MD 3 0.51 MD> ˜4.0 0.89 NC 0 0 AA023287 mh70h01.r1 Soares mouse placenta 4NbMP13.5 14.5 Mus est D N I * ˜3.1 0.51 * ˜4.0 0.88 NC 0 0 M36084 “Mouse dytosolid malate dehydrogenase (cMDHase) gene, gene D N I 2.2 0.51 I 2.6 0.83 NC 0 0 U43900 “Mus musculus signal transducing adaptor molecule STAM gene C N I 3.1 0.51 I 3.7 0.77 NC 0 0 D67015 “Mouse mRNA for scg, complete cds” gene C N I 2.4 0.51 I 2.5 0.62 NC 0 0 W17644 mb76b03.r1 Soares mouse p3NMF19.5 Mus musculus cD est D N I 1.7 0.51 I 1.6 0.36 NC 0 0 X76653 M. musculus mRNA for ARP-1 gene C N I * ˜3.0 0.51 I * ˜2.5 0.34 NC 0 0 L42115 Mus musculus insulin-activated amino acid transporter m gene A N I 2.3 0.51 I 1.9 0.28 MD 1.2 0 X95351 M. musculus mRNA for pMELK protein gene C N I 2.9 0.51 I 2 0.18 NC 0 0 L75822 “Mus musculus follistatin-like protein mRNA, complete gene B N I 1.6 0.51 I 1.3 0.11 D 1.3 0.2 J03236 “Mouse (M. musculus) jun-B mRNA, complete cds” gene D N I * 3.1 0.5 I * 7.7 2.85 I 2.4 0.8 AA048650 mj33b02.r1 Soares mouse embryo NbME13.5 14.5 Mus mu est B N I * ˜3.1 0.5 I * ˜3.8 0.79 NC 0 0 U19891 “Mus musculus putative CCAAT binding factor 1, (mCBF) gene C N I * 3 0.5 I * 3.5. 0.72 NC 0 0 X13586 “Murine mRNA for 2,3-bisphosphoglycerate mutase (BPGN gene B N I * ˜3.0 0.5 I * ˜3.3 0.6 NC 0 0 X55126 M. musculus Zfp-29 gene for zinc finger protein gene B N D ˜3.0 0.5 D ˜3.0 0.5 NC 0 0 W83187 mf09b08.r1 Soares mouse p3NMF19.5 Mus musculus cDNA est B N I 2.6 0.5 I 2.3 0.38 NC 0 0 D87903 “Mouse mRNA for ARF6, complete cds” gene C N I 2 0.49 I 2.2 0.67 NC 0 0 U18797 “Mus musculus MHC class 1 antigen H-2M3 (H-2M3) mRN gene D N I * ˜3.0 0.49 I * ˜3.2 0.56 NC 0 0 AA036265 “mi72g03.r1 Soares mouse embryo NbME.13.5 14.5 Mus mu est B N MI 2.5 0.49 I 2.3 0.38 NC 0 0 D12907 “Mouse gene for 47-kDa heat shock protein(HSP47), exor gene D N I 1.6 0.49 I 1.4 0.28 NC 0 0 J04953 “Mouse gelsolin gene, complete cds” gene D N I 1.8 0.49 NC 0 0 D 1.3 0.2 X01023 Mouse normal c-myc gene and translocated homologue fr gene B N I 2.5 0.48 I 3.7 1.29 I 1.5 0.1 X65627 M. musculus mRNA TN for p68 RNA helicase gene B N I 2.2 0.48 I 3.2 1.28 I 1.4 0.2 X87817 M. musculus mRNk for Ulip protein gene B N I 2.2 0.48 I 2.3 0.54 NC 0 0 M65255 “Mouse hydrophiiic protein(KE2 wt) mRNA, complete cds gene D N I 2.4 0.48 I 2.3 0.44 NC 0 0 M19960 “Mouse cAMP-dependent protein kinase alpha subunit gen gene A N I 2.3 0.48 MI 1.7 0.18 MC 1.3 0.1 W13586 “ma93a02.r1 Soares mouse P3NMF19.5 Mus.musculus cDN est D N MD 3 0.48 NC 0 0 MI * 1.4 0 U16216 “Mus musculus uroporphyrinogen III synthase (UROS) mRN gene A N I 2.9 0.48 NC 0 0 NC 0 0 AA139469 mr82e09.r1 Stratagene mouse heart(#937316) Mus musc est D N I * ˜3.0 0.47 I * ˜3.9 0.86 NC * 0 0 AA118546 mn09c06.r1 Beddington mouse embryonic region Mus mus est C N I 2 0.47 I 2.4 0.83 NC 0 0 W44201 mc74b05.r1 Soares mouse embryo NbME13.5 14.5 Mus m est A N I 2.6 0.47 I * 3 0.7 NC 0 0 AA068057 mm26b03.r1 Stratagene mouse skin (#937313) Mus mus est C N I 2.3 0.47 I 2.6 0.64 NC 0 0 AA167947 “ms21d05.r1 Stratagene mouse skin (#937313) Mus musc est D N I * ˜3.1 0.47 I * ˜3.4 0.61 NC 0 0 W29669 mc05f11.r1 Soares mouse p3NMF19.5 Mus musculus cDNA est D N I * 2.8 0.47 I * 2.6 0.39 NC 0 0 W14823 mb35d10.r1 Soares mouse p3NMF19.5 Mus musculus cDNA est D N I 2.5 0.47 I 2.1 0.27 NC 0 0 AA000813 mg35h10.r1 Soares mouse embryo NbME13.5 14.5 Mus mu est B N I 2.1 0.47 I 1.6 0.14 D 1.4 0.1 AA116282 mq05f12.r1 Soares 2NbMT Mus musculus cDNA clone 5 est C N MI * 2.7 0.47 NC * 0 0 NC * 0 0 W62960 “md86g09.r1 Soares mouse embryo NbME13.5 14.5 Mus r est A N MI 2.3 0.47 NC 0 0 NC 0 0 M34815 “Mouse monokine induced by gamma interferon (MIG) mR gene D N I * ˜2.9 0.46 I * ˜6.1 2.03 I 2.1 0.5 M32490 “Mouse Cyr61 mRNA, complete cds” gene D N I 2 0.46 I 3.1 1.74 I 1.6 0.4 AA118739 mp54b08.r1 Soares 2NbMT Mus musculus cDNA clone 5 est D N I 2.4 0.46 I 2.9 0.82 MI 1.2 0.1 U73200 “Mus musculus p116Rip mRNA, complete cds” gene C N I 1.8 0.46 I 1.8 0.53 NC 0 0 X83601 M. musculus PTX3 mRNA gene C N I * 2.5 0.46 I * 2.2 0.32 NC 0 0 AA142800 “mq64e01.r1 Soares 2NbMT Mus musculus cDNA clone 58 est D N I 2.1 0.46 I 1.8 0.28 NC 0 0 D55720 “Mouse mRNA for nuclear pore-targeting complex, comple gene A N I 2.1 0.46 I 1.7 0.22 MI 1.2 0.1 U14103 “Mus musculus RGL protein mRNA, complete cds” gene A N I * ˜2.7 0.46 NC * 0 0 MI 1.8 0.2 W82881 “mf22b12.r1 Soares mouse embryo NbME13.5 14.5 Mus m est B N I 2.4 0.46 NC 0 0 D 1.3 0.1 D88793 Mouse mRNA for cystein rich protein-1, complete cds” gene C N I 1.7 0.45 I 2.2 0.98 I 1.2 0.1 W17549 “mb74a01.r1 Soares mouse p3NMF19.5 Mus musculus c est B N I * 2.4 0.45 I * 2.9 0.72 NC 0 0 U29152 “Mus musculus at dose reductase mRNA, complete cds” gene A N I 1.9 0.45 I 1.7 0.28 NC 0 0 W15722 mb53b04.r1 Soares mouse p3NMF19.5 Mus musculus cb est A N I * ˜2.9 0.45 NC * 0 0 D * ˜6.0 3.2 U48363 “Mus musculus transcription at activator alpha-NAC (Naca) gene B N I 1.7 0.44 I 1.9 0.72 NC 0 0 W77613 me68d10.r1 Soares mouse embryo NbME13.5 14.5 Mus r est D N I 2.4 0.44 I 2.5 0.49 NC 0 0 M29464 “Mouse platetet-derived growth factor A chain (PDGFA) m gene A N I 2.4 0.44 I 2.5 0.48 NC 0 0 AA087332 mn95e11.r1 Stratagene mouse lung 937302 Mus muscull est C N D 2.6 0.44 D 2.5 0.42 NC 0 0 W33440 mc15d01.r1 Soares mouse p3NMF19.5 Mus musculus cbN est C N I 1.9 0.44 I 1.6 0.23 NC 0 0 W33721 mc54h12.r1 Soares mouse embryo NbME13.5 14.5 Mus m est D N I 1.5 0.44 I 1.3 0.16 NC 0 0 L31398 “Mus musculus dynamin (UDnm) mRNA, complete cds” gene A N I * 2.2 0.44 NC * 0 0 NC 0 0 U27462 “Mus musculus BS4 peptide RNA, complete cds” gene A N I * ˜2.9 0.44 NC * 0 0 MI 1.9 0.2 U28789 “Mus musculus p53-associated cellular protein PACT mRN gene C N I * 2.9 0.44 NC * 0 0 NC 0 0 U43085 “Mus musculus glucocorticoid-attenuated response gerie gene C N I * ˜2.6 0.43 I * ˜12.4 5.75 I 4.7 2.7 AA039109 “mi99d11.r1 Soares mouse embryo NbME13.5 14.5 Mus m est D N I 2.1 0.43 I 2.9 1.1 I 1.4 0.2 U22015 “Mus musculus retinoid X receptor interacting protein (RIF gene A N I * ˜2.7 0.43 I * ˜3.3 0.68 NC 0 0 AA039104 mi99c09.r1 Soares mouse embryo NbME13.5 14.5 Mus mI est B N I * ˜3.0 0.43 I * ˜3.2 0.54 NC 0 0 AA119078 “mp65d05.r1 Soares 2NbMT Mus musculus cDNA clone 5 est B N I * 2.5 0.43 I 2.4 0.42 NC 0 0 U20636 “Mus musculus cyclin F mRNA, alternatively spliced form, gene A N I * ˜2.8 0.43 NC * 0 0 MI 3.1 0.7 W33415 mc52c10.r1 Soares mouse embryo NbME13.5 14.5 Mus m est D N I 2.7 0.43 NC 0 0 D 1.6 0.2 AA161979 ms25g12.r1 Stratagene mouse skin (#937313) Mus muscu est C N I * ˜2.7 0.42 I * ˜5.3 1.63 NC 0 0 U42386 “Mus musculus fibroblast growth factor inducible gene 14 gene C N I * 2.9 0.42 t 4.8 ..1.3 I . 1.7 0.2 D00925 Mouse mRNA for transcription factor S-II-related protein gene D N I * ˜2.9 0.42 I * ˜3.9 0.84 NC 0 0 AA162093 mn45d08.r1 Beddington mouse embryonic region Mus mu est C N I * 2.9 0.42 I * 3.6 0.72 NC 0 0 U21960 “Mus musculus calcium modulating cyclophilin ligand (CA gene B N I * 2.5 0.42 I * 3 0.67 NC 0 0 Z31554 M. musculus (129/Sv) Cctd mRNA for CCT (chaperonin co gene D N I 1.8 0.42 I 2 0.58 NC 0 0 L31958 “Mus musculus (clone pMAT1) mRNA, complete cds” gene A N I 2 0.42 I 2 0.38 NC 0 0 D38077 “Mouse gene for APEX nuclease, complete cds” gene D N I 2.1 0.42 I 2 0.36 NC 0 0 X12507 Mouse eIF-4All mRNA for protein synthesis initiation facto gene B N I 2.1 0.42 I 1.8 0.25 NC 0 0 AA108822 mp39h01.r1 Barstead MPLRB1 Mus musculus cDNA clone 5 est A N I 2.2 0.42 I 1.1 0.01 D 1.9 0.4 AA107471 m196g10.r1 Stratagene mouse kidney (#937315) Mus musc est B N I * ˜2.8 0.42 NC * 0 0 NC 0 0 X52102 M. musculus p16K gene for 16 kDa protein gene B N I 2.4 0.42 NC 0 0 NC 0 0 D78641 “Mouse mRNA for membrane glycoprotein, complete cds”gene C N I 2.3 0.42 NC 0 0 NC 0 0 M16465 “Mouse calpactin I light chain (p11) mRNA, complete cds” gene D N MD 1.6 0.42 NC 0 0 NC 0 0 M63725 “Mouse binding protein for T-cell receptor (TCR-ATF1) mF gene A N I * ˜2.9 0.41 I * ˜3.1 0.48 NC 0 0 U43512 “Mus musculus dystroglycan (Dag1) mRNA, partial cds” gene C N I 2.1 0.41 I 1.6 0.13 NC 0 0 M34476 “Mouse retinoic acid receptor gamma (mRAR-gamma-A) n gene A N I * ˜2.9 0.42 NC 0 0 NC 0 0 1.1 0 AA051486 mg55d01.r1 Soares mouse embryo NbME 13.5 14.5 Mus mu est B N I 1.9 0.4 I 2.6 1.09 I 1.4 0.2 L16846 “Mouse BTG1 mRNA, complete cds” gene D N I 2.6 0.4 I 3.1 0.67 NC 0 0 AA089187 mi85h02.r1 Stratagene mouse kidney (#937315) Mus mu est A N I 2.4 0.4 I 2.5 0.46 NC 0 0 W70629 me19c04.r1 Soares mouse embryo NbME13.5 14.5 Mus mu est A N I * ˜2.8 0.4 I * ˜3.0 0.46 NC 0 0 U29396 “Mus musculus annexin V (Anx5) mRNA, complete cds” gene A N I 1.7 0.4 I 1.6 0.31 NC 0 0 AA117064 mn29e08.r1 Beddington mouse embryonic region Mus mus est C N I 2.7 0.4 I 2 0.16 D 1.4 0.1 L08757 “Mus musculus homeobox protein (Hoxa10) mRNA, comp gene A N I 2.3 0.4 I 1.7 0.14 D 1.4 0.1 M25244 “Mouse pre-B cell P2B/LAMP-1 mRNA,complete cds” gene D N I 1.6 0.4 I 1.3 0.13 NC 0 0 L18880 “Mouse vinculin mRNA, complete cds” gene A N I * ˜2.8 0.4 I * ˜1.8 0.12 D 1.5 0.1 X53824 Mouse X16 mRNA gene B N I 2.2 0.4 NC 0 0 NC 0 0 M87539 “Mouse cellular retinoic acid binding protein type II (CRAB gene D N I * ˜2.6 0.4 NC * 0 0 D ˜7.1 2.8 M23384 “Mouse glucose transporter 1 mRNA, complete cds” gene D N I 1.9 0.4 NC 0 0 D 1.7 0.5 M57999 “Mouse transcription factor NF-kappa-B DNA binding subu gene A N I 2.7 0.39 I 3.1 0.57 NC 0 0 AA072252 “mm69d07.r1 Stratagene mouse macrophage (#937306) M est C N I 2.5 0.39 I 2 0.19 NC 0 0 AA027667 “mi09f07.r1 Soares mouse p3NMF19.5 Mus musculus cDNA est B N I * 2.9 0.39 NC * 0 0 NC 0 0 U08020 “Mus musculus FVB/N collagen pro-alpha-1 type 1 chain m gene A N I 1.4 0.39 NC 0 0 D 1.2 0.3 M84324 “Mus musculus type IV collagenase mRNA, complete cds” gene D N I 1.9 0.39 NC 0 0 D 1.6 0.4 U70210 “Mus musculus TR2L mRNA, complete cds” gene C N MI 2.5 0.38 MI 2.7 0.47 NC 0 0 U08110 Mus musculus RNA1 homolog (Fug1) mRNA, complete cd gene B N I * 2.2 0.38 I * 2.3 0.42 NC 0 0 AA144601 mr68g02.r1 Stratagene mouse testis (#937308) Mus muscu est D N I * 2.5 0.38 I * 2.6 0.4 NC 0 0 AA050551 mj20e07.r1 Soares mouse embryo NbME13.5 14.5 Mus mu est D N I * ˜2.7 0.38 I * ˜2.6 0.34 NC 0 0 AA020620 mh63a06.r1 Soares mouse placenta 4NbMR13.5 14.5 Mus m est B N I * ˜2.8 0.38 I * ˜2.5 0.28 NC 0 0 AA155371 mn43f12.r1 Beddington mouse embryonic region Mus mu est A N I * 2.5 0.38 I * 1.6 0.08 D 1.5 0.1 Z72000 M. musculus BTG3 mRNA gene B N I 1.9 0.37 I 2.7 1.05 I 1.4 0.2 X52875 Mouse homeobox gene S8 mRNA gene B N MI 2.2 0.37 I 2.8 0.76 MI 1.3 0.1 AA145181 “ms04d10.r1 Stratagene mouse skin (#937313) Mus musc est D N I * 2.6 0.37 I * 3.3 0.68 NC 0 0 W85250 mf49e09.r1 Soares mouse embryo NbME13.5 14.5 Mus mu est D N I * ˜2.8 0.37 I * ˜3.3 0.55 NC 0 0 X51829 Mouse myeloid differentiation primary response mRNA en gene B N I * 2.5 0.37 I * 2.7 0.44 NC 0 0 D28492 “Mouse mRNA for Nedd2 protein, complete cds” gene A N I * 2.6 0.37 I * 2.6 0.37 NC 0 0 AA008737 mg98e04.r1 Soares mouse embryo NbME13.5 14.5 Mus r est B N I * ˜2.7 0.37 I * ˜2.2 0.21 NC 0 0 W82026 me96a05.r1 Soares mouse embryo NbME13.5 14.5 Mus mu est A N I 1.9 0.37 MI 1.5 0.16 D 1.2 0.1 W97055 “mg07h12.r1 Soares mouse embryo NbME13.5 14.5 Mus est A N I 2 0.37 NC 0 0 D 2.5 0.9 UD6119 “Mus musculus cathepsin H prepropeptide (ctsH) mRNA, gene A N MI 2.6 0.37 NC * 0 0 NC 0 0 X69657 M. musculus (clone W13) WRS mRNA for tryptophan--tRN/ gene B N I * 2.2 0.37 0 0 D 1.6 0.2 AA163305 mr92g12.r1 Stratagene mouse embryonic carcinoma (#937 est B N I * 2.6 0.36 I * 3.7 0.9 NC 0 0 XD1756 Mouse cytochrome c gene (MC1) gene B N I 2 0.36 I 2.6 0.88 I 1.3 0.1 AA051500 mL53d10.r1 Soares mouse embryo NbME13.5 14.5 Mus m est C N I 1.8 0.36 I 2 0.56 NC 0 0 U55861 “Mus musculus RNA binding protein TIAR mRNA, complet gene C N I 2.2 0.36 MI 2.3 0.42 NC 0 0 U66620 “Mus musculus SWI/SNF complex 60 kDa subunit (BAF60 gene A N I * ˜2.7 0.36 I * ˜2.6 0.3 NC 0 0 W13502 ma85a03.r1 Soares mouse p3NMF19.5 Mus musculus cDN est D N D 1.5 0.36 D 1.4 0.24 NC 0 0 X64837 M. musculus Oat mRNA for ornithine aminotransferase gene B N I 1.9 0.36 I 1.7 0.22 D 1.1 0 D16141 “Mouse mgl-1 mRNA for CRF, complete cds” gene B N I 2 0.36 I 1.6 0.14 NC 0 0 M57891 “Mouse complement component C2 mRNA, complete cds” gene D N I * ˜2.4 0.36 I * ˜1.6 0.1 NC 0 0 M12600 “Mouse androgen regulated gene RP2, complete cds, with gene A N I 2.6 0.36 NC 0 0 NC 0 0 M34141 “Mouse prostaglandin endoperoxide (PGG/H) mRNA, comp gene A N I 2.2 0.35 I 2.8 0.73 NC 0 0 U10119 “Mus musculus SKD1 protein mRNA, complete cds” gene A N I * ˜2.6 0.35 I * ˜2.9 0.45 NC 0 0 D50367 “House mouse; Musculus domesticus mRNA for KAP3B, c gene C N I ˜2.7 0.35 I * ˜3.0 0.44 NC 0 0 AA061989 mj83a01.r1 Soares mouse p3NMF19.5 Mus musculus cDN est C N MD 2.7 0.35 D * ˜2.9 0.4 NC 0 0 W30116 “mc26h02.r1 Soares mouse p3NMF19.5 Mus musculus cDN est D N I 2.1 0.35 I 2.2 0.39 NC 0 0 U43076 “Mus musculus cdc37 homolog mRNA, complete cds” gene C N I 1.6 0.35 I 1.6 0.35 NC 0 0 W11011 ma47a11.r1 Soares mouse p3NMF19.5 Mus musculus ,cD est C N I * 2.1 0.35 MI * 2.1 0.34 NC 0 0 M12379 Mouse Thy-1.2 glycoprotein gene, complete cds” gene A N I 1.6 0.35 I 1.6 0.33 NC 0 0 L37092 “Mus musculus cyclin-dependent kinase homologue (p130 gene A N I * 2.4 0.35 I * 2.2 0.28 NC 0 0 X7D887 M. musculus mRNA for p59 immunophiliin gene A N I 1.7 0.35 MI 1.4 0.11 D 1.3 0.1 W08392 “mb43c10.r1 Soares mouse p3NMF19.5 Mus musculus cD est C N I 1.7 0.35 I 1.3 0.1 D 1.3 0.1 AAD31158 mi47c11.r1 Soares mouse embryd NbME13.5 14.5 Mus m est B N I 1.6 0.34 I 2 0.82 I 1.2 0.1 D13695 “Mouse mRNA for ST2L protein, complete cds” gene D N I * ˜2.6 0.34 I * ˜3.4 0.67 I 1.3 0.1 AA166088 ms24c05.r1 Stratagene mouse skin (#937313) Mus muscu est D N I 2.5 0.34 I 3.1 0.58 NC 0 0 AA168959 “mr31d03.r1 Soares mouse 3NbMS Mus musculus cDNA clo est C N I * 2.6 0.34 I * 3.2 0.56 NC 0 0 Z67745 “M. musculus mRNA for phosphatase 2A catalytic subunit, gene B N I 1.9 0.34 I 2.2 0.54 NC 0 0 L33726 “Mouse fascin mRNA, complete cds” gene D N I 1.8 0.34 I 1.9 0.43 NC 0 0 M96163 “Mus musculus (clone 2) serum inducible kinase (SNK) ,mF gene A N I 2 0.34 MI 1.9 0.29 NC 0 0 AA050852 mj20d12.r1 Soares mouse embryo NbME13.5 14.5 Mus m est A N I 1.7 0.34 I 1.6 0.23 NC 0 0 M33760 “Mouse FGF receptor mRNA, complete cds” gene D N I 2 0.34 I 1.8 0.23 NC 0 0 X07997 Mouse mRNA for cytotoxic T-cell membrane glycoprotein gene D N I 2 0.34 I 1.5 0.1 D 1.3 0.1 J04036 “Mus musculus (clone p70ZN8) band 3-related protein mF gene A N I 2 0.34 NC 0 0 NC 0 0 X67083 M. musculus chop-10 mRNA gene B N I 1.8 0.34 NC 0 0 D 2 0.6 AA153519 ms61g12.r1 Stratagene mouse embryonic carcinoma (#93 est A N I 2.4 0.33 I 4.1 1.26 NC 0 0 X79003 M. musculus mRNA for integrin alpha 5 subunit gene B N I 1.9 0.33 I 2.3 0.62 NC 0 0 M76727 “Mouse pyruvate dehydrogenase (pdha-1) mRNA, comple gene A N I 2.1 0.33 I 2.2 0.43 NC 0 0 Z26580 M.musculus mRNA for cyclin A gene B N MI 2.3 0.33 I 2.3 0.35 NC 0 0 X84692 M. musculus 5pnr mRNA for RNA binding protein gene C N D ˜2.6 0.33 D ˜2.6 0.33 NC * 0 0 Z37164 “M. musculus Cctq mRNA encoding cytosolic chaperone c gene B N I 1.8 0.33 I 1.8 0.32 NC 0 0 M84607 “Mus musculus PDGF-alpha-receptor (PDGF-alpha-R) mRN gene D N I * 2.4 0.33 I * 2.3 0.26 NC 0 0 U76832 “Mus musculus plasma membrane protein syntaxin-4 mRN gene C N I 2.1 0.33 I 1.9 0.23 NC 0 0 D10475 Mouse mRNA for epimorphin gene A N I 2.1 0.33 I 1.8 0.2 NC 0 0 M18194 Mouse fibronectin (FN) mRNA gene D N I 1.5 0.33 I 1.3 0.1 NC 0 0 W41501 mc43d41.r1 Soares mousse p3NMF19.5 Mus musculus cD est A N I 1.9 0.33 NC 0 0 D 1.3 0.1 D29016 Mouse mRNA for squalene synthase gene A N I 1.7 0.33 NC 0 0 D 2.2 1.1 W13425 mb33h06.r1 Soares mouse p3NMF19.5 Mus musculus cDNA est D N I 1.9 0.33 NC 0 0 D 1.7 0.4 X96639 M. musculus mRNA for protein responsible for hereditary n gene B N I 1.9 0.32 I 2.6 0.93 I 1.4 0.2 U49112 “Mus musculus calcium-binding protein ALG-2 (ALG-257) gene B N I 2 0.32 I 2.1 0.42 NC 0 0 Z46663 M. musculus DNA for growth hormone gene and promoter gene D N MI * 2.3 0.32 MI * 2.5 0.38 NC * 0 0 D76446 “Mouse mRNA for TAK1 (TGF-beta-activated kinase), corr gene C N I * ˜2.5 0.32 I * ˜2.4 0.29 NC 0 0 W11954 “ma79e11.r1 Soares mouse p3NMF19.5 Mus musculus cDN est D N I * 2.5 0.32 I * 2 0.17 NC 0 0 AA154451 mq47f04.r1 Soares 2NbMT Mus musculus cDNA clone 58 est B N I * 2.4 0.32 I * 1.9 0.16 NC 0 0 W63876 md64b01.r1 Soares mouse embryo NbME13.5 14.5 Mus m est A N I 2.2 0.32 NC 0 0 MC 1.7 0.2 U22394 “Mus musculus mSin3A (sin3A) mRNA, complete cds” gene A N I * 2.5 0.32 NC * 0 0 NC 0 0 AA003458 “mg58h04.r1 Soares mouse embryo NbME13.5 14.5 Mus mu est B N I 2 0.32 NC 0 0 NC 0 0 U51112 “Mus musculus Na+/H+ exchanger (NHE-1) mRNA, compl gene B N I 2.2 0.32 NC 0 0 NC 0 0 U38196 “Mus musculus palmytoylated protein p55 mRNA, comple gene C N I 2.3 0.32 NC 0 0 NC 0 0 W20990 mb89f11.r1 Soares mouse p3NMF19.5 Mus musculus cD est D N I 2.2 0.32 NC 0 0 NC 0 0 W41899 mc64g01.r1 Soares mouse embryo NbME13.5 14.5 Mus mu est D N D 1.8 0.32 NC 0 0 NC 0 0 X72910 M. musculus Cd24a gene gene D N I 2.2 0.31 I 3.8 1.35 I 1.7 0.4 U13262 “Mus musculus myelin gene expression factor (MEF-2) mF gene A N I * ˜2.4 0.31 I * ˜3.2 0.59 NC 0 0 AA152884 mr14e04.r1 Soares mouse 3NbMS Mus musculus cDNA cl est D N I 2.3 0.31 I 2.7 0.51 I 1.2 0 D14636 “Mouse mRNA for PEBP2a1 protein, complete cds” gene B N I * ˜2.5 0.31 I * ˜3.0 0.5 NC 0 0 U52945 “Mus musculus tumor susceptibility protein TSG101 (tsg1 gene B N I 1.9 0.31 I 1.9 0.43 NC 0 0 X14926 Mouse mRNA for calreticulin gene D N I 1.9 0.31 I 1.9 0.37 NC 0 0 AA067362 mm39b05.r1 Stratagene mouse melanoma (#937312) MU est A N I * 2.2 0.31 I * 2.2 0.34 NC 0 0 D88315 “Mouse mRNA for tetracycline transporter-like protein, co gene C N I 2.5 0.31 I 2.4 0.25 NC 0 0 L07037 “Mus musculus (clone E31.1 in pGEM7ZI(+)) N-acetylgluc gene D N I 2.1 0.31 I 1.7 0.14 NC 0 0 M62766 “Mouse HMG-CoA reductase mRNA1 3′ end” gene D N I * 2.4 0.31 I * 1.5 0.06 NC 0 0 X13135 Murine mRNA fragment for fatty acid synthase (EC 2.3.1 gene B N I 1.8 0.31 NC 0 0 D 1.9 0.5 U08378 “Mus musculus acute phase response factor (APRF) mRN gene C N I 1.8 0.31 NC 0 0 NC * 0 0 J03928 “Mouse CD1 phosphofructokinase (PFK) mRNA, complete gene C N I 1.6 0.31 NC 0 0 D 2.2 1.1 W84260 mf45b08.r1 Soares mouse embryo NbME13.5 14.5 Mus m est A N MI * ˜2.5 0.3 I * ˜3.9 0.87 NC * 0 0 W51433 est A Y I * 2.3 0.3 I * 3.4 0.85 NC 0 0 X66091 M. musculus ASF mRNA gene B N I * ˜2.5 0.3 I 3.8 0.81 NC 0 0 L36611 “Mus musculus protein synthesis initiation factor 4A (elf-4 gene A N MI 1.5 0.3 I 1.8 0.62 NC 0 0 AA032948 m124a02.r1 Soares mouse embryo NbME13.5 14.5 Mus m est B N I 2 0.3 I 2.6 0.62 NC 0 0 U69270 Mus musculus nuclear LiM interactor (NLI) mRNA, compl (gene C N MI 2.1 0.3 I 2.6 0.59 NC 0 0 AA097292 “mk16h08.r1 Soares mouse p3NMF19.5 Mus musculus c est C N D 1.5 0.3 D 1.7 0.46 NC 0 0 AA111494 mo51c06.r1 Life Tech mouse embryo 10 5dpc 10665016 M est C N I * 2.5 0.3 I * 2.5 0.31 NC 0 0 AA030635 “mi11hp9.r1 Soares mouse p3NMF19.5 Mus musculus cDN est B N D * ˜2.3 0.3 D * ˜2.3 0.26 NC 0 0 U16741 “Mus musculus capping protein alpha 2 subunit mRNA. c gene A N I 2.1 0.3 I 2 0.23 NC 0 0 U25844 “Mus musculus serine proteinase inhibitor (SP1I) mRNA, c gene A N I 1.7 0.3 NC 0 0 NC 0 0 W35058 mc35g06.r1 Soares mouse p3NMF19.5 Mus musculus cD est B N I 1.7 0.3 NC 0 0 D 1.8 0.5 X99572 M. musculus mRNA for new member of PDGF/VEGT family gene C N I 2.1 0.3 NC 0 0 NC 0 0 Y00309 Mouse LDH-A gene for lactate dehydrogenease-A gene C N I 1.3 0.3 NC 0 0 D 1.3 0.4 AA008095 my71h12.r1 Soares mouse embryo bME13.5 14.5 Mus est D N I * ˜2.6 0.3 NC * 0 0 NC 0 0 J04115 “Mouse c-jun protein oncogene mRNA, complete cds” gene D N I * ˜2.3 0.29 I * ˜6.0 2.04 I 2.6 0.8 U19854 “Mus musculus ubiquitinating enzyme E2-20K mRNA ,com gene B N I * ˜2.3 0.29 I * ˜4.2 1.07 NC 0 0 X66976 “M. musculus coI8a1 gene, exon 1 (and joined CDS)” gene C N I * 2.5 0.29 I * 3.1 0.55 NC 0 0 D64160 “Mouse clone Rae-107 mRNA for cell surface protein, com gene B N I * 2.5 0.29 I * 2.4 0.28 NC 0 0 M59378 “Murine tumor necrosis factor 1 receptor (TNFR-1) mRNA, gene D N I * 2.4 0.29 I * 2.1 0.2 NC 0 0 D84096 “Mouse mRNA for ubiquitin carboxyl-terminal hydrolase ( gene B N I * 2.2 0.29 I * 1.9 0.18 NC 0 0 AA003990 mg89c04.r1 Soares mouse embryo NbME13.5 14.5 Mus r est A N I 2.1 0.29 I 1.7 0.15 NC 0 0 AA170444 ms90t10.r1 Soares mouse 3NbMS Mus musculus cDNA clone est D N I * 2.1 0.29 I * 1.5 0.09 NC 0 0 U03715 “Mus musculus alpha-1 (XVIII) collagen (COL18A1) gene, gene B N I * 2.1 0.29 MI * 1.5 0.08 NC 0 0 X17502 Mouse mRNA overexpressed and amplified in teratocarcino gene B N I 1.6 0.29 MI 1.2 0.06 D 1.3 0.1 W54584 md01d12.r1 Soares mouse embryo NbME13.5 14.5 Mus r est A N I 2.1 0.29 NC 0 0 MC 1.2 0 L31783 “Mus musculus uridine kinase mRNA, partial cds” gene A N I * ˜2.6 0.29 NC 0 0 NC 0 0 W65178 md78h05.r1 Soares mouse embryo NbME13.5 14.5 Mus m est A N I 2.1 0.29 NC 0 0 D 1.5 0.1 U24674 “Mus musculus Max interacting protein 1 alternatively spli gene A N I * 2.5 0.29 NC * 0 0 NC 0 0 X62701 M. musculus muPAR2 mRNA gene A N I * 2.1 0.28 I * 4.9 2.18 I 2.3 0.7 W82115 me98c09.r1 Soares mouse p3NMF19.5 Mus musculus cDN est A N I * 2.1 0.28 I * 3 0.75 NC 0 0 AA105763 m184e01.r1 Stratagene mouse kidney (#937315) Mus musc est D N I * ˜2.5 0.28 I * ˜3.5 0.64 NC 0 0 W53188 md19a08.r1 Soares mouse embryo NbME13.5 14.5 Mus m est D N I 2 0.28 I 2.4 0.53 NC 0 0 X70298 M. musculus sox-4 mRNA gene C N MI 2.1 0.28 I 2.5 0.49 NC 0 U74359 “Mus musculus mothers-against-dpp-related-1 mRNA, cor gene C N I * ˜2.4 0.28 I * ˜2.9 0.43 NC 0 0 X61576 M. musculus mRNA for connexin 43 gene D N I * ˜2.5 0.28 I * ˜2.7 0.34 NC 0 W85566 “mf49e05.r1 Soares mouse embryo NbME13.5 14.5 Mus m est A N D * ˜2.3 0.28 D * ˜2.3 0.29 NC 0 0 AA060704 j63b03.r1 Soares mouse p3NMF19.5 Mus musculus cDN est B N D 1.7 0.28 D 1.7 0.29 NC 0 0 X61506 Mouse E46 mRNA for E46 protein gene C N I 1.7 0.28 I 1.7 0.29 NC 0 0 W18308 “mb68h11.r1 Soares mouse p3NMF19.5 Mus musculus c est D N I 1.4 0.28 I 1.4 0.25 NC 0 0 U77040 “Mus musculus LIM protein 3 (mSLiM3) mRNA, complete gene C N I 1.8 0.28 I 1.6 0.2 NC 0 0 L19932 “Mouse (beta ig-h3) mRNA, complete cds” gene C N I 2 0.28 I 1.8 0.2 NC 0 0 L10106 “Mus-musculus protein tyrosine phosphate mRNA, comple gene A N I ˜2.5 0.28 I * 2.0 0.16 NC 0 0 W15789 mb51a07.r1 Soares mouse p3NMF1.9.5 Mus musculus cD est D N I 1.8 0.28 I 1.6 0.16 NC 0 0 X14805 Mouse mRNA encoding DNA (cytosine-5)-methyltransfera gene C N I 2.2 0.28 I 1.8 0.15 NC 0 0 M13444 “Mouse alpha-tubulin isotype M-alpha-4 mRNA, complete gene A N I 2 0.28 I 1.6 0.13 NC 0 0 Z14986 M. musculus mRNA encoding adenosylmethionine decarbox gene A N I 2.3 0.28 NC 0 0 D 1.3 o:I D16262 “Mouse mRNA encoding unknown protein, complete cds” gene A N I 2.1 0.28 NC 0 0 NC 0 0 U02887 “Mus musculus DNA repair protein (XRCC1) mRNA, compl gene B N I 2.1 0.28 NC 0 0 NC 0 0 X04367 Mouse pre-PDGF receptor mRNA (PDGF = platelet-derivec gene B N I 1.9 0.28 NC 0 0 D 1.9 0.4 U63337 “Mus musculus cyclin-dependent kinase-2 alpha (Cdk2-alp gene C N I 2.2 0.28 NC 0 0 NC 0 0 U69695 “Mus musculus hyaluronan synthase homolog mRNA, comp gen C N I * ˜2.4 0.2 7 I * ˜7.4 2.7 I 3.1 1 W30651 mc14e08.r1 Soares mouse 3NMF19.5 Mus musculus cDN est D N I * 2.3 0.27 I * 3.9 0.98 I 1.7 0.2 AA003554 mg61d10.r1 Soares mouse embryo NbME.13.5 14.5 Mus m est B N I 1.7 0.2 7 I 2.2 0.59 I 1.2 0.1 U17961 “Mus musculus p62 mRNA, complete cds” gene A N I * 2.3 0.27 I * 2.8 0.48 NC 0 0 AA068582 mm45f05.r1 Stratagene mouse melanoma (#937312) Mus est C N I 2.3 0.27 I 2.7 0.44 NC 0 0 M32010 “Mouse MHC H˜2K/t-W5-linked open reading frame mRNA gene D N I 1.8 0.27 I 2 0.41 NC 0 0 X15267 “Mouse mRNA for acidic ribosomal phosophoprotein PO gene B N D 1.2 0.27 D 1.3 0.37 NC 0 0 AA003841 mg78n06.r1 Soares mouse embryo NbME13.“5, 14.5 Mus est B N I * 2.1 0.27 I * 2.3 0.33 NC 0 0 M15501 “Mouse alpha-cardiac actin mRNA, 3′ end” gene D N I 2.1 0.27 I 1.9 0.2 NC 0 0 W13498 ma84h06.r1 Soares mouse P3NMF19.5 Mus musculus cD est D N I 2.4 0.27 I 2.1 0.17 NC 0 0 U37485 “Mus musculus CDE1-binding protein CDEBP (Cdebp) gen gene C N I 1.8 0.27 I 1.5 0.12 D 1.2 0.1 W51315 est A Y I * 2.3 0.27 NC * 0 0 NC 0 0 L25885 “Mouse beta 1,4N-acetylgalactosaminyltransferase mRNA gen A N I 2.5 0.27 NC 0 0 NC 0 0 X94616 M. muscuus RNA for glycogen synthase gene B N I 1.8 0.27 NC 0 0 D 2 0.5 X62940 M. musculus TSC-22 mRNA gene B N I 1.6 0.27 NC 0 0 NC 0 0 X60831 Mousse ubf gene for transcription factor UBF gene B N I * 2.4 0.27 NC * 0 0 NC 0 0 X53929 M. musculus mRNA for PGII (decorin) gene B N I * 2.2 0.27 NC * 0 0 D ·9.5 4 X67469 M. musculus mRNA for AM2 receptor gene C N I 1.7 0.27 NC 0 0 D 2.4 1.1 U73744 “Mus musculus heat shock 70 protein (Hsc70) gene, com gene D N I 1.4 0.27 NC 0 0 NC 0 0 D12618 “Mouse mRNA for nucleosome assembiy protein-1, compl gene C N I 1.7 0.26 I 2.8 1.26 I 1.6 0.4 Z31557 M. musculus (129/Sv) Cctz mRNA for CCT (chaperonin co gene B N I 1.7 0.26 I 2.2 0.76 I 1.3 0.2 AA003093 mg51a08.r1 Soares mouse embryo NbME13.5 14.5 Mus m est B N I 2 0.26 I 2.4 0.5 I 1.2 0 D49429 “Mouse NCBP-29 mRNA for PW29, complete cds” gene B N I 2 0.26 MI 2.5 0.49 NC 0 0 J04620 Mouse primase p49 subunit (priA) mRNA, complete cds” gene A N I * 2.4 0.26 I * 2.9 0.46 NC 0 0 W78338 me84b10.r1 Soares mouse embryo NbME13.5 14.5 Mus mu est A N MI 1.6 0.26 MI 1.8 0.46 NC 0 0 W13878 mb36.h02.r1 Soares mouse p3NMF19.5 Mus. musculus cD est D N I 1.8 0.26 I 2.1 0.45 NC 0 0 X04017 Mouse mRNA for cysteine-rich glycoprotein SPARC gene A N I 1.3 0.26 I 1.4 0.39 NC 0 0 M63848 “Mouse leukotriene A-4 hydrolase mRNA, complete cds” gene D N I 1.8 0.26 I 1.9 0.26 NC 0 0 AA120716 mp72h12.r1 Soares 2NbMT Mus musculus cDNA clone 574 est C N I 2.1 0.26 I 2.1 0.24 NC 0 0 AA109714 mp49e12.r1. Barstead MPLRB1 Mus musculus cDNA clone est D N I 1.9 0.26 I 1.8 0.22 NC 0 0 X70067 M. musculus RNPS1.mRNA for RNA-DNA-binding protein gene C N I 1.8 0.26 I 1.7 0.16 NC 0 0 W98785 m912b10.r1 Soares mouse embryo NbME13.5 14.5 Mus m est D N I * 2.2 0.26 I * 1.6 0.09 NC 0 0 M63445 “Mouse NAD-dependent methylenetetrahydrofolate dehyd gene A N I 1.9 0.26 NC 0 0 D 1.6 3 D63707 “Mouse mRNA for hepatoma derived growth factor (HDGF gene A N I 1.6 0.26 NC 0 0 D 1.2 0.1 X85802 M. musculus mRNA for testosterone induced transcript gene B N I 1.8 0.26 NC 0 0 D 1.6 0.2 AA124405 mq76b12.r1 Stratagene mouse melanoma (#937312) Mus est C N I * 2.1 0.26 NC * 0 0 D 1.7 0.2 L25274 “Mus musculus transmembrane glycoprotein (DM-GRASP) gene D N I * ˜2.2 0.25 I ˜3.5 0.75 I 1.6 0.1 U18366 “Mus musculus cardiotrophin-1 mRNA, complete cds” gene A N I * 2.2 0.25 I * 3 0.59 NC 0 0 X81987 M. musculus mRNA for TAX responsive element binding pr gene C N D 1.3 0.25 D 1.4 0.44 NC 0 0 U58494 “Mus musculus melanoma cell-derived intracisternal A-part gene D N I 2 0.25 I 2.3 0.44 NC 0 0 M74227 “Mouse cyclophilin C (cyp C) mRNA, complete cds gene D N I 1.9 0.25 I 2.1 0.42 NC 0 0 K02927 “Mouse ribonucleotide reductase subunit M1 mRNA, com gene A N MI 1.7 0.25 I 1.9 0.37 NC 0 0 W85321 “mf48b01.r1 Soares mouse embryo NbME13.5 14.5Mus m est B N I 1.9 0.25 I 2.1 0.35 NC 0 0 D50523 Mouse mRNA for TI-227 gene C N I 2.1 0.25 I 2.4 0.33 NC 0 0 U47024 “Mus musculus matemal-embryonic 3 (Mem3) mRNA, com gene C N I 1.9 0.25 I 2 0.3 NC 0 0 AA009169 “mh01g11.r1 Soares mouse embryo NbME13.5 14.5 Mus m est A N I 2.1 0.25 I 2 0.24 NC 0 0 D87990 “House mouse; Musculus domesticus mRNA for UDP-gala gene C N MI 1.7 0.25 I 1.7 0.24 NC 0 0 W91398 mf93c05.r1 Soares mouse embryo NbME13.5 14.5 Mus mu est B N I 1.9 0.25 I 1.9 0.22 NC 0 0 W54288 “md44f11.r1 Soares mouse embryo NbME13.5.14.5 Mus m est D N I 1.6 0.25 I 1.6 0.2 NC 0 0 U58987 “Mus musculus putative endo/exonuclease MmMre11a (Mr est C N I * 2.4 0.25 I * 2.1 0.16 NC 0 0 Y07685 M. musculus mRNA for NfiBi-protein (exon 2-12) gene C N I * ˜2.2 0.25 I * ˜1.8 0.15 NC 0 0 AA062237 m165a03.r1 Stratagene mouse kidney (#937315) Mus musc est C N I 2.3 0.25 I 1.9 0.13 NC 0 0 AA168903 ms39b07.r1 Life Tech mouse embryo 13 5dpc 10666014 est B N I * ˜2.2 0.25 I * ˜1.8 0.12 NC 0 0 U16818 “Mus musculus UDP glucuronosyltransferase (UGT1-06) m gene A N I * 2.3 0.25 I 8 1.6 0.06 D 1.5 0.1 U27267 “Mus musculus LPS-induced C-X-C chemokine LIX precurs gene A N I 2.4 0.25 NC 0 0 D 1.8 0.2 X03505 Mouse gene exon 2 for serum amyloid A (SAA) 3 protein gene A N I 2.1 0.24 I 2.8 0.58 NC 0 0 U58033 “Mus musculus p34 cdc2 kinase mRNA, complete cds” gene D N I 1.7 0.24 I 2 0.45 NC 0 0 AA105703 mm66b08.r1 Stratagene mouse macrophage (#937306) Mu est C N I 1.8 0.24 I 2 0.39 NC 0 0 W97817 mg03c03.r1 Soares mouse embryo NbME13.5 14.5 Mus m est A N MI * 2.3 0.24 I * ˜2.7 0.38 NC 0 0 M27844 “Mus musculus calmodulin synthesis (CaM) cDNA, comple gene D N I 1.5 0.24 I 1.6 0.31 NC 0 0 D00659 “Mouse CYP XIX gene encoding aromatase P450, (EC 1.1 gene A N D * ˜2.2 0.24 D * ˜2.2 0.26 NC * 0 0 M64403 “Mus domesticus cyclin-like protein (induced by colony-st gene D N I 1.9 0.24 I 1.9 0.23 NC 0 0 L25125 “Mouse RNA helicase and RNA-dependent ATPase from th geneA N I 2 0.24 I 1.9 0.21 NC 0 0 X61399 Mouse F52 mRNA for a novel protein gene B N I 1.7 0.24 I 1.6 0.19 NC 0 0 X07295 M. musculus mitochondrial malate dehydrogenease gene 5′ff gene D N I 1.6 0.24 I 1.5 0.19 NC 0 0 W51028 est D Y I * ˜2.3 0.24 I * ˜2.0 0.16 NC 0 0 W64587 “md89g12.r1 Soares mouse embryo NbME13.5 14.5 Mus m est D N I * 1.9 0.24 I * 1.7 0.16 NC 0 0 W98255 me74g02.r1 Soares mouse embryo NbME13.5 14.5 Mus m est D N I 1.6 0.24 I 1.4 0.12 NC 0 0 M32240 “Mouse growth arrest specific protein (gas3) mRNA, com gene D N I 1.9 0.24 I 1.3 0.04 D 1.4 0.2 W75205 me45c10.r1 Soares mouse embryo NbME13.5 14.5 Mus r est A N I 1.8 0.24 NC 0 0 NC 0 0 AA002605 mg44g07.r1 Soares mouse embryo NbME13.5 14.5.Mus mu est B N I 1.7 0.24 NC 0 0 NC 0 0 L26528 “Mus musculus Ra b11b mRNA, complete cds” gene D N I 1.8 0.24 NC 0 0 NC 0 0 X13171 Mouse mRNA for H1 histone subtype H1(0) gene A N I * ˜2.3 0.23 I * ˜4.8 1.29 NC 0 0 X783O4 “M. musculus (SRP9) signal recognition particle subunit m gene C N I 1.7 0.23 I 2.8 1.11 I 1.6 0.3 W89293 mf62h02.rt Soares mouse embryo NbME13.5 14.5 Mus mu est B N I 1.9 0.23 I 2.6 0.61 NC 0 0 AA002852 mg38f06.r1 Soares mouse embryo NbME13.5 14.5 Mus m est D N I * ˜2.2 0.23 I * ˜3.2 0.58 NC 0 0 X70303 M. musculus MC3 mRNA for proteasome gene B N I 1.5 0.23 I 1.8 0.43 NC 0 0 L25126 “Mus musculus RNA helicase mRNA, complete cds” gene A N I * 2.3 0.23 I * 2.9 0.4 NC 0 0 X77557 M. musculus cadL mRNA gene A N MI 2 0.23 MI 2.3 0.39 NC 0 0 U05809 “Mus musculus LAF1 transketolase mRNA, complete cds” gene B N D 1.6 0.23 D 1.8 0.32 NC 0 0 AA105072 mp42a09.r1 Barstead MPLRB1 Mus musculus cDNA clone est D N I * ˜2.3 0.23 I * ˜1.9 0.13 NC * 0 0 W57495 est D Y D 1.4 0.23 D 1.3 0.1 NC 0 0 X56123 Mouse mRNA fortalin gene C N I 1.5 0.23 I 1.3 0.09 NC 0 0 AA002458 mg13c11.r1 Soares mouse embryo NbME13.5 14.5 Mus r est C N MI 1.9 0.23 MI 1.5 0.09 NC 0 0 L39017 “Mus musculus endothelial cell activated protein C recepto gene A N I * 2.3 0.23 NC * 0 0 NC 0 0 D16432 “Mouse murine CD63 mRNA for murine homologue of CD gene A N I 1.4 0.23 NC 0 0 D 1.4 0.4 W91509 mg16c06.r1 Soares mouse embryo NbME13.5 14.5 Mus r est A N I 1.8 0.23 NC 0 0 D 1.7 0.3 AA145829 mq68e09.r1 Soares 2 NbMT Mus musculus cDNA clone 58 est D N I 1.6 0.23 NC 0 0 NC 0 0 AA154968 L95e07.r1 Stratagene mouse embryonic carcinoma (#937 est D N I * 2.2 0.23 NC * 0 0 NC 0 0 AA035984 m170f08.r1 Soares mouse embryo NbME13.5 14.5 Mus mu est B N I * ˜2.1 0.22 I * ˜3.6 0.79 NC 0 0 U08215 “Mus musculus Hsp70- related NST-1 (hsr.1) mRNA, com gene B N I 2.2 0.22 I 3.2 0.62 NC 0 0 U09507 “Mus musculus p21 (Waf1) mRNA, complete cds gene A N I 1.6 0.22 I 2 0.53 MI 1.3 0.1 AA137883 mq80b01.r1 Stratagene mouse melanoma (#937312) Mus est A N I 2 0.22 I 2.6 0.46 NC 0 0 AA162710 mn42d04.r1 Beddington mouse embryonic region Mus mu est D N I ˜2.3 0.22 I ˜2.8 0.38 NC 0 0 AA116335 mp97e11.r1 Soares 2NbMT Mus musculus cDNA clone 5 est C N MI * ˜2.3 0.22 MI * ˜2.3 0.25 NC 0 0 W83743 mf32a08.r1 Soares mouse embryo NbME13.5 14.5 Mus mu est A N I 2 0.22 I 1.9 0.18 NC 0 0 U07159 “Mus musculus medium-chain acyl-CdA dehydrogenease mi gene A N I 2.2 0.22 I 1.9 0.14 NC 0 0 L07063 “Mus musculus FKBP65 binding protein mRNA, complete gene A N I 1.6 0.22 I 1.4 0.14 MC 1.1 0 AA118131 mn10c11.r1 Beddington mouse embryonic region Mus musc est A N I * 2.1 0.22 I * 1.5 0.05 NC 0 0 L46855 “Mus musculus ret finger protein, mRNA, complete cds” gene B N I * 1.8 0.22 I * 1.3 0.04 NC 0 0 X63190 M. musculus PEA3 mRNA gene B N MI * 2.3 0.22 NC * 0 0 NC * 0 0 W17473 mb60c09.r1 Soares mouse p3NMF19.5 Mus musculus cDN est D N MD 2.1 0.22 NC 0 0 NC 0 0 U23789 “Mus musculus zipper protein kinase (ZPK) mRNA, comple gene A N I 2.2 0.22 NC 0 0 D 3 0.7 W29468 “mb99d10.r1 Soares mouse p3NMF19.5 Mus musculus cD est C N I 1.7 0.22 NC 0 0 D 1.3 0.1 U03421 “Mus. musculus interleukin-11 mRNA, complete cds gene C N I * ˜2.2 0.21 I * ˜9.4 3.76 I 4.2 1.9 AA097711 “mo15h10.r1 Life Tech mouse embryo 13 5dpc 10666014 est C N I * 2 0.21 I * 2.8 0.54 NC 0 0 X61433 M. mulculus mRNA for sodium/potassium ATPase beta su gene B N I * 2 0.21 I * 2.4 0.36 NC 0 0 X74856 M. musculus L28 mRNA for ribosomal protein L28 gene D N D 1.3 0.21 D 1.4 0.32 NC 0 0 AA024288 mh91g06.r1 Soares mouse placenta 4NbMP13.5 14.5 Mus m est D N I 2.1 0.21 I 2.3 0.3 NC 0 0 AA144400 mr98b11.r1 Stratagene mouse embryonic carcinoma (#9.37 est A N I 2 0.21 I 1.9 0.18 MC 0 0 AA063858 mj87f04.r1 Soares mouse p3NMF19.5 Mus musculus cDNA est D N I 2.1 0.21 I 2 0.17 NC 0 0 L06144 “Mus musculus protein kinase (Ptk) mRNA, complete cds” gene A N I 1.8 0.21 I 1.7 0.16 NC 0 0 Y09632 M. musculus mRNA for kinesin-like protein 174 gene C N I 1.8 0.21 I 1.6 0.16 NC 0 0 W98413 mg20g06.r1 Soares mouse embryo NbME13.5 14.5 Mus m est A N I * 1.8 0.21 I 1.6 0.15 NC 0 0 W08120 mb40b05.r1 Soares mouse p3NMF19.5 Mus musculus cD est B N I 1.3 0.21 I 1.3 0.14 NC 0 0 AA073341 mm93a05.r1 Stratagene mouse heart(#937316) Mus musc est C N I 2.1 0.21 I 1.8 0.12 NC 0 0 M69042 “Mouse protein kinase C delta mRNA, complete cds” est A N I 1.9 0.21 I 1.6 0.1 D 1.2 0 W34969 mc33e08.r1 Soares mouse p3NMF19.5 Mus musculus cDN est D N D ˜2.0 0.21 NC 0 0 NC 0 0 M38314 “Mouse pulmonary surfactant protein SP-C (SFTP2) gene, gene A N I * ˜2.0 0.21 NC * 0 0 D ˜4.1 1 AA009014 mg97b12.r1 Soares mouse embryo NbME13.5 14.5 Mus mu est A N I * 2.1 0.21 NC * 0 0 MC 1.8 0.2 U09419 “Mus musculus retinoid X receptor interacting protein (RIF gene A N I 1.9 0.21 NC 0 0 D 1.4 0.1 W65634 me14h04.r1 Soares mouse embryo NbME13.5 14.5 Mus m est A N MI 1.9 0.21 NC 0 0 D 1.5 0.1 X75313 M. musculus (C57BL/6) GB-like mRNA gene B N D 1.2 0.21 NC 0 0 NC 0 0 U02304 “Mus musculus LAF1 glycosaminoglycan N-acetytglucosar gene B N MI * 2.3 0.21 NC * 0 0 NC 0 0 W17589 mb77a08.r1 Soares mouse p3NMF19.5 Mus musculus cDN est B N I 1.9 0.21 NC 0 0 NC 0 0 AA067092 mm31e06.r1 Stratagene mouse skin (#937313) Mus muscu est C N I * ˜2.0 0.21 NC * 0 0 NC 0 0 D87744 “Mouse mRNA for DRPLA protein, complete cds” gene C N I * 2 0.2 NC * 0 0 NC 0 0 AA139602 “mq40f05.r1 Barstead MPLRB1 Mus musculus cDNA clone est C N I 1.7 0.21 NC 0 MC 1.2 0 U13705 “Mus musculus domesticus C57BL/6J plasma glutathione gene D N D 1.6 0.2 D 2.1 0.54 D 1.3 0.1 AA064066 mj62d04.r1 Soares mouse p3NMF19.5 Mus musculus cDN est C N D 1.3 0.2 D 1.5 0.46 NC 0 0 AA114576 mo63h09.r1 Stratagene mouse heart (#937316) Mus musc est C N I 1.7 0.21 I 1.8 0.24 NC 0 0 U33840 “Mus musculus TRAF-related protein (TRAFamn) mRNA, c gene A N I * ˜2.0 0.2 I * ˜2.0 0.19 D 1 0 M23568 “Mus musculus (clone pFT27) transmembrane protein mR gene A N I 1.6 0.2 I 1.6 0.18 NC 0 0 W54566 md06c05.r1 Soares mouse embryo NbME13.5 14.5 Mus mu est A N D 1.5 0.2 D 1.4 0.15 NC 0 0 AA007816 mg66g09.r1 Soares mouse embryo NbME13.5 14.5 Mus m est B N I * ˜1.9 0.2 I * ˜1.7 0.15 NC 0 0 W29434 mb99f07.r1 Soares mouse p3NMF19.5 Mus musculus cDN est D N I 1.4 0.2 I 1.3 0.11 NC 0 0 W47728 mc89f02.r1 Soares mouse embryo NbME13.5 14.5 Mus m est A N I * 2.1 0.2 NC * 0 0 NC 0 0 W48968 est A Y I * ˜1.9 0.2 NC * 0 0 D 1.2 0 X65657 M. musculus (testis) Sox-5 mRNA gene C N D 1.9 0.2 NC 0 0 NC 0 0 AA170690 ms85g09.r1 Soares mouse 3NbMS Mus musculus cDNA est B N I 1.6 0.2 NC 0 0 D 1.3 0.1 M22326 “Mouse growth factor-induced protein (zif/268) mRNA, c gene D N I * 1.9 0.19 I * 6.8 3.94 I 3.6 2.6 U70494 “Mus musculus histone H2A.Z (H2A.Z) mRNA, complete c gene C N MI 1.4 0.19 I 1.7 0.44 I 1.2 0.1 M33467 Mouse dilute lethal-20J (d-t20J) deletion breakpoint fusio est A N MI * ˜2.2 0.19 I * ˜2.8 0.39 NC 0 0 AA000574 mg23g05.r1 Soares mouse embryo NbME13.5 14.5 Mus m est B N MI * ˜2.1 0.19 I * ˜2.6 0.36 NC 0 0 AA161949 mr92c02.r1 Stratagene mouse embryonic carcinoma (#93 est D N I 1.4 0.19 I 1.6 0.33 NC 0 0 AA163911 “m27e02.r1 Soares mouse eNbMS Mus musculus cDNA cl est C N I * 2 0.19 I * 2.4 0.32 NC 0 0 J05186 “Mouse protein disulfide isomerase related protein (ERp72 gene A N I 1.5 0.19 I 1.6 6.3 NC 0 0 L27842 “Mouse peroxisome assembly factor-1 (PMP35) gene, com gene C N I * 2.1 0.19 I * 2.3 0.28 NC 0 0 X80992 M. musculus Vgr-1 mRNA gene A N MD ˜2.1 0.19 D ˜2.1 0.23 NC 0 0 Z49916 M. musculus mRNA for CLCN4 gene B N MI 2 0.19 I 2.1 0.23 NC 0 0 X55038 Mouse mCENP-B gene for centromere autoantigene B. (CEN gene B N I 1.8. 0.19 I 1.9 0.21 NC 0 0 AA146194 mq65e10.r1 Soares 2NbMT Mus musculus cDNA clone 5 est C N I 1.9 0.19 MI 1.9 0.18 NC 0 0 W46019 mc77h09.r1 Soares mouse embryo NbME13.5 14.5 Mus m est C N D 1.6 0.19 D 1.5 0.16 NC 0 0 L26489 “Mus musculus furin (FUR) mRNA, complete cds” gene D N I 1.7 0.19 I 1.7 0.15 NC 0 0 X16705 Mouse mRNA for lamin B gene D N I * ˜2.2 0.19 I * ˜2.0 0.14 NC 0 0 U20238 “Mus musculus GTPase-activating protein GAPIII, mRNA, c gene B N I 1.9 0.19 I 1.7 0.12 NC 0 0 M63649 “Mouse M-twist gene, complete cds“ gene A N I 1.9 0.19 I 1.7 0.11 NC 0 0 U36384 “Mus musculus twist-related bHLH protein Dermo-1 mRN gene A N I 1.6 0.19 I 1.3 0.08 NC 0 0 U29055 “Mus musculus G protein beta 36 subunit mRNA, complet gene C N I 1.5 0.19 M 1.1 0.03 D 1.3 0.1 W71558 me39g12.r1 Soares mouse embryo NbME13.5 14.5 Mus m est A N I * ˜2.0 0.19 NC * 0 0 MI * ˜4.1 1 AA037997 m179d03.r1 Soares mouse p3NMF19.5 Mus musculus cDNA est B N I * ˜1.9 0.19 NC * 0 0 NC 0 0 W56940 md17f12.r1 Soares mouse embryo NbME13.5 14.5 Mus m est A N MI * 2.2 0.19 NC * 0 0 NC 0 0 AA103492 mo25b07.r1 Life Tech mouse embryo 13 5dpc 10666014 est C N I * 2 0.19 NC * 0 0 NC 0 0 X83536 M. musculus mRNA for membrane-type matrix metalloprote gene B N I 1.5 0.18 I 2 0.54 NC 0 0 X93357 M. musculus mRNA for SYT gene C N I 1.7 0.18 I 2.3 0.51 MI 1.3 0.1 AA118729 mp57g08.r1 Soares 2NbMT Mus musculus cDNA clone 57 est C N I 1.6 0.18 I 2 0.4 NC 0 0 AA032860 m125b10.r1 Soares mouse embryo NbME13.5 14.5 Mus mu est D N I * 1.9 0.18 I * 2.3 0.33 NC 0 0 AA106492 m191a03.r1 Stratagene mouse kidney (#937315) Mus muscu est D N I 1.8 0.18 I 2.1 0.29 NC 0 0 AA035938 m169g11.r1 Soares mouse embryo NbME13.5 14.5 Mus m est B N I 1.8 0.18 I 1.9 0.24 NC 0 0 AA168362 ms30f06.r1 Stratagene mouse skin (#937313) Mus muscul est D N I * ˜2.0 0.18 I * ˜2.1 0.22 NC 0 0 J02623 “Mouse cytosolic aspartate aminotransferase isoenzyme m gene D N I 1.8 0.18 I 1.9 0.21 NC 0 0 AA087270 mo12g12.r1 Life Tech mouse embryo 10 5dpc 10665016 M est C N MI * 2 0.18 I * 2.1 0.19 NC 0 0 D21831 “Mouse RXR-beta gene, exon 5, 6, 7, 8 and 9” gene D N MI * ˜2.0 0.18 I * ˜1.8 0.15 NC 0 0 X14206 Mouse mRNA for poly (ADP-ribose) polymerase (EC 2.4.2 gene B N I 2.1 0.18 I 1.7 0.1 NC 0 0 D38162 Mouse mRNA for mouse a1(XI) collagene chain gene C N I * 2.0 0.18 I * ˜1.6 0.09 NC 0 0 D38581 Mouse mRNA for VNSP II (vomeronasal secretory protein gene C N MD * ˜2.1 0.18 NC * 0 0 NC * 0 0 L23769 “Mouse microfibril-associated glycoprotein (Magp) mRNA, gene B N I 1.6 0.18 NC 0 0 NC 0 0 D37874 “Mouse fcrn mRNA for Fc receptor (FcRn), complete cds” gene B N I 1.7 0.18 NC 0 0 NC 0 0 X66405 M. musculus mRNA for collagene alpha1 (VI)-collagen gene B N I 1.5 0.18 NC 0 0 D 1.3 0.1 X58251 Mouse COL1A2 mRNA for pro-alpha-2(I) collagene gene B N I 1.2 0.18 NC 0 0 NC 0 0 X70398 M. musculus P311 mRNA gene B N MI * ˜2.1 0.18 NC * 0 0 NC 0 0 X80169 M. musculus mRNA for 200 kD protein gene C N I 1.6 0.18 NC 0 0 NC 0 0 W07927 mb40d05.r1 Soares mouse p3NMF19.5 Mus musculus cD est C N I 1.9 0.18 NC 0 0 NC 0 0 W08269 mb40b02.r1 Soares mouse p3NMF19.5 Mus musculus cDNA est C N I 1.3 0.18 NC 0 0 D 1.5 0.4 AA097267 mk16h10.r1 Soares mouse p3NMF19.5 Mus musculus cDN est D N I * 2 0.18 NC * 0 0 NC 0 0 X06086 Mouse mRNA for major excreted protein (MEP) gene D N I 1.4 0.18 0 0 NC 0 0 X69619 M. musculus mRNA for inhibin beta-A subunit gene B N I * 2 0.17 I * 7.5 3.62 I 3.8 1.9 L27990 “Mus musculus Ro protein mRNA, complete cds” gene A N MI * 2 0.17 I * 3.8 1.01 MI 1.9 0.3 AA051446 mj51c10.r1 Soares mouse embryo NbME13.5 14.5 Mus mus est B N I * 2.1 0.17 I 3.0 0.47 NC 0 0 W63835 “md84c11.r1 Soares mouse embryo NbME13.5 14.5 Mus est A N I 2 0.17 I 2 7 0.39 NC 0 0 AA051538 mj52e04.r1 Soares mouse embryo NbME13.5 14.5 Mus m est B N MI 1.8 0.17 MI 2.1 0.29 NC 0 0 X06917 Mus musculus aspartate aminotransferase gene 5′-flank ar gene D N I 1.5 0.17 I 1.6 0.22 NC 0 0 D00472 “Mouse mRNA for cofilin, complete cds and flanks” gene D N I 1.3 0.17 I 1.3 0.22 NC 0 0 J04696 “Mouse glutathione S-transferase class m (GST5-5) mRN gene D N MI 1.8 0.17 I 1.9 0.2 NC 0 0 U62483 “Mus musculus ubiquitin conjugating enzyme (ubc4) mRN gene C N I 2 0.17 I 2 0.19 NC 0 0 AA108866 m163g07.r1 Stratagene mouse testis (#937308 Mus mu est D N I * 1.8 0.17 I * 1.9 0.19 NC 0 0 X12944 Mouse mRNA for HMG-17 chromosomal protein gene B N I 1.4 0.17 I 1.4 0.18 NC 0 0 L42177 “Mus musculus S182 protein mRNA, complete cds” gene D N I 1.9 0.17 I 1.9 0.17 NC 0 0 J04694 “Mus musculus alpha-1 type IV collagene (Co14a-1) mRNA, gene D N I 1.5 0.17 I 1.5 0.15 NC 0 0 U02313 “Mus musculus MAST205 protein kinase mRNA, complete gene B N I 1.7 0.17 I 1.6 0.12 NC 0 0 D26091 “House mouse; Musculus domesticus female mammary ca gene B N I 1.5 0.17 MI 1.4 0.11 NC 0 0 D13473 Mouse mRNA for Rad51 protein gene D N I * 2 0.17 I * 1.7 0.1 NC 0 0 M93422 “Mouse adenylyl cyclase type VI mRNA, complete cds” gene D N I 2 0.17 I 1.4 0.03 NC 0 0 W51476 est A Y MI * ˜2.0 0.17 NC * 0 0 NC * 0 0 AA108088 m158e05.r1 Stratagene mouse testis (#937308) Mus mus est C N MI * ˜1.7 0.17 NC * 0 0 NC * 0 0 W65511 me10h02.r1 Soares mouse embryo NbME13.5 14.5 Mus m est A N MI 1.8 0.17 NC 0 0 NC 0 0 U48972 “Mus musculus spindlin (Spin) mRNA, complete cds ” gene B N I * ˜2.1 0.17 NC * 0 0 NC 0 0 X65687 M. musculus mRNA for serine-threonine protein kinase gene B N I 1.5 0.17 NC 0 0 NC 0 0 W89738 mf76h09.r1 Soares mouse embryo NbME13.5 14.5 Mus mu est B N I 1.9 0.17 NC 0 0 D 1.8 0.2 U36277 “Mus musculus I-kappa B alpha chain mRNA, complete cd gene A N I * ˜1.9 0.16 I * ˜7.1 2.6 I 3.7 1.5 U44088 “Mus musculus TDAG51 (TDAG51) mRNA , complete cds” gene C N I 1.8 0.16 I 4.7 2.23 I 2.7 1.1 AA103783 mm91d10.r1 Stratagene mouse embryonic carcinoma RA est C N I 1.5 0.16 I 2.1 0.7 I 1.4 0.2 AA154214 mr33e01.r1 Soares mouse 3NbMS Mus musculus cDNA clo est D N I * 2 0.16 I * 3 0.51 NC 0 0 D90344 “Mouse mRNA for t-complex polypeptide 1A (Tcp-1a), co gene D N I 1.4 0.16 I 1.7 0.4 NC 0 0 U43918 “Mus musculus proliferation-assoclated protein 1 mRNA, c gene B N MI 1.5 0.16 I 1.7 0.3 NC 0 0 AA008650 mg87a07.r1 Soares mouse embryo NbME13.5 14.5 Mus m est D N I * 1.8 0.16 I * 2.1 0.3 NC 0 0 Z49085 M. musculus mRNA for mouse developmental kinase 2 (MD gene B N I 1.4 0.16 I 1.6 0.26 NC 0 0 L24118 “Mouse primary response gene B94 mRNA, 3′ end” gene A N I 1.8 0.16 I 2 0.24 NC 0 0 W29756 mc07e07.r1 Soares mouse p3NMF19.5 Mus musculus cDN est D N I 2 0.16 I 2.1 0.21 NC 0 0 U30839 “Mus musculus voltage dependent anion channel 3 mRNA gene C N I 1.4 0.16 I 1.4 0.19 NC 0 0 D87898 “House mouse; Musculus domesticus male brain mRNA for gene C N I 1.4 0.16 I 1.4 0.18 NC 0 0 W41817 mc63e10.r1 Soares mouse embryo NbME13.514.5 Mus mu est C N I 1.3 0.16 I 1.3 0.15 NC 0 0 W34756 “mc32g09.r1 Soares mouse p3NMF19.5 Mus musculus c est D N I * 1.8 0.16 I * 1.8 0.15 NC 0 0 AA062349 ml64d11.r1 Stratagene mouse kidney (#937315) Mus musc est C N D 1.5 0.16 D 1.4 0.13 NC 0 0 X70847 M. musculus mRNA for adenine nucteotide translocase gene C N I 1.3 0.16 I 1.3 0.12 NC 0 0 D28117 “Mouse RNA for magnesium dependent protein phosphagene A N I 2 0.16 I 1.8 0.11 NC 0 0 D13545 “Mouse mRNA for primase large subunit, complete cds” gene A N I * 2 0.16 I * 1.8 0.09 NC 0 0 U41805 “Mus musculus putative T1/ST2 receptor binding protein gene B N I 1.6 0.16 I 1.4 0.08 NC 0 0 AA008793 mg99d09.r1 Soares mouse embryo NbM.E13.5 14.5 Mus m est B N MD * 1.8 0.16 NC * 0 0 NC * 0 0 J62091 md84h04.r1 Soares mouse embryo NbME13.5 14.5 Mus m est A N I 1.5 0.16 NC 0 0 D 1.3 0.1 W77121 “me61c06.r1 Soares mouse embryo NbME13.5 14.5 Mus m est D N D 1.5 0.16 NC 0 0 NC 0 0 AA154337 ms61b04.r1 Stratagene mouse embryonic carcinoma (#193 est C N I * ˜1.8 0.15 I * ˜3.5 0.77 NC 0 0 X62091 M. musculus Pgp-1 mRNA for CD44 (clone M4) gene D N I 1.7 0.15 I 2.5 0.53 I 1.4 0.1 D87691 “House mouse; Musculus domesticus mRNA for eRF1, par gene C N I * 1.8 0.15 I * 2.6 0.51 NC 0 0 AA051736 mj53a03.r1 Soares mouse embryo NbME13.5 14.5 Mus mu est B N I * ˜1.9 0.15 I * ˜2.8 0.45 I * 1.5 0.1 AA096645 mo05a08.r1 Stratagene mouse lung 937302 Mus muscul est D N I 1.7 0.15 I 2.1 0.39 MI 1.3 0.1 W62036 “md84c07.r1 Soares mouse embryo NbME13.5 14.5 Mus est D N I 1.8 0.15 I 2.3 0.34 MI 1.3 0.1 X78990 M. musculus mRNA for testin 2 gene D N I * 1.8 0.15 I * 2.2 0.33 NC 0 M73748 “Mouse OTS-8 mRNA, complete cds” gene D N I 1.5 0.15 I 1.6 0.19 NC 0 0 AA008683 mg83e03.r1 Soares mouse embryo NbME13.5 14.5 Mus m est B N I 1.6 0.15 I 1.6 0.18 NC 0 0 M15525 “Mouse laminin B1 mRNA, complete cds” gene D N I 1.6 0.15 I 1.7 0.19 NC 0 0 U69599 “Mus musculus interferon gamma receptor second chain ( gene C N I * 1.9 0.15 I * 2 0.17 NC 0 0 M28540 “Mouse beta-glucoronidase (Gus-s) mRNA, complete cds” gene D N I 1.9 0.15 I 1.9 0.15 NC 0 0 U22399 “Mus musculus Cdk-inhibitor p57k1P2 (k1P2) mRNA; comp gene A N I 1.8 0.15 I 1.5 0.08 NC 0 0 U34960 “Mouse G protein beta 2 subunit mRNA; complete cds” gene A N I 1.4 0.15 I 1.3 0.08 NC 0 0 X16834 Mouse mRNA for Mac-2 antigene gene D N I 1.5 0.15 I 1.3 0.08 NC 0 0 AA119665 mp68h05.r1 Soares 2NbMT Mus musculus cDNA clone 5744 est C N I * ˜1.9 0.15 MI * ˜1.4 0.05 NC 0 0 U17343 “Mus musculus signal recognition particle receptor beta s gene A N I * 1.9 0.15 MI * 1.4 0.03 D 1.4 0.1 AAD13526 mh10h02.r1 Soares mouse placenta 4NbMP13.5 14.5 Mu” est B N MI * ˜2.0 0.15 NC * 0 0 NC * 0 0 U69137 “Mus musculus T2-cadherin mRNA, partial cds” gene C N MI * 2 0.15 NC * 0 0 NC * 0 0 W551l7 est A Y I * 1.7 0.15 NC * 0 0 NC 0 0 JD526I “Mouse protective protein (Mo54) mRNA, complete cds” gene A N I 1.4 0.15 NC 0 0 D 1.5 0.3 W65510 me10h01.r1 Soares mouse embryo NbME13.5 14.5 Mus m est A N I 1.4 0.15 NC 0 0 D 1.2 0.1 X82D67 M. musculus mRNA for thiol-specific antioxidant gene A N I 1.3 0.15 NC 0 0 D 1.3 0.1 AA049707 “mj11gD8.r1 Soares mouse embryo NbME13.5 14.5 Mus est B N MI * ˜1.9 0.15 NC * 0 0 NC 0 0 X69025 M. musculus of PCTAIRE-1 mRNA encoding protein kinase gene B N I 1.7 0.15 NC 0 0 D 1.5 0.1 W08050 mb38d12.r1 Soares mouse p3NMF19.5. Mus musculus cDN est C N I * 1.7 0.15 NC * 0 0 NC 0 0 U12473 “Mus musculus Balb/c conserved helix-loop-helix ubiquitou gene C N I * ˜1.8 0.14 I * ˜3.8 0.9 NC 0 0 U51196 “Mus musculus APC-binding protein EB1 homolog mRNA, gene B N I 1.6 0.14 I 2.1 0.35 NC 0 0 J05479 “Mouse calcineurin catalytic subunit mRNA, complete cds gene D N I * ˜2.0 0.14 I * ˜2.5 0.26 MI 1.2 0 AA154743 mt64c04.r1 Soares mouse lymph node NbMLN Mus muscu est A N I 1.9 0.14 I 2.2 0.24 NC 0 0 U76546 “Mus musculus ADP-ribosylation factor-like protein 4 mRN gene C N I * ˜1.9 0.14 I * ˜2.2 0.23 NC * 0 0 W82209 me99f01.r1 Soares mouse p3NMF19.5 Mus musculus cDN est A N MI 1.4 0.14 I 1.5 0.19 NC 0 0 AA028877 mh90g10.r1 Soares mouse placenta 4NbMP13.5 14.5 Mus est B N I 1.4 0.14 I 1.5 0.17 NC 0 0 AA039108 m199d10.r1 Soares mouse embryo NbME13.5 14.5 Mus mu est B N MI * ˜1.9 0.14 MI * ˜1.9 0.15 NC 0 0 U35623 “Mus musculus EAT/MCL-1 mRNA, complete cds” gene D N I 1.7 0.14 I 1.7 0.15 NC 0 0 AA016424 mh38102.r1 Soares mouse placenta 4NbMP13.5 14.5 Mus est D N I 1.6 0.14 I 1.6 0.12 NC 0 0 AA015570 m161f10.r1 Soares mouse embryo NbME13.5 14.5 Mus mus est B N I * 1.9 0.14 I * 1.7 0.08 NC 0 0 M36120 “Mouse keratin 19 gene, complete cds” gene D N I 1.8 0.14 I 1.4 0.04 NC 0 0 W46019 mc77h09.r1 Soares mouse embryo NbME13.5 14.5 Mus m est C N MD 1.6 0.14 NC 0 0 NC * 0 0 AA10L455 mp08f02.r1 Life Tech mouse embryo 8 5dpc 10664019 M est A N MD 1.4 0.14 NC 0 0 NC 0 0 L40459 “Mus musculus latent transforming growth factor-beta bin gene A N I 1.6 0.14 NC 0 0 MD 1.7 0.2 U49739 “Mus musculus unconventional myosin VI (sv) mRNA, com gene B N I * 1.9 0.14 NC * 0 0 NC 0 0 X69620 M. musculus mRNA for inhibin beta-B subunit gene B N I * ˜1.8 0.14 MI * ˜1.0 D ˜3.1 0.5 X51905 Mouse Ldh-2 mRNA for lactate dehydrogenease-B (EC 1.1 gene B N MI 1.7 0.14 NC 0 0 MD 1.6 0.2 AA073296 mm83a12.r1 Stratagene mouse embryonic carcinomaRA ( est C N I 1.7 0.14 NC 0 0 MD 1.8 0.2 D10024 “Mouse mRNA for protein-tyrosine kinase substrate p36 ( gene C N I 1.2 0.14 NC 0 0 NC 0 0 M32599 “Mouse glyceraldehyde-3-phosphate dehydrogenease mRN gene D N I 1.3 0.14 NC 0 0 NC 0 0 W17745 mb77h01.r1 Soares mouse p3NMF19.5 Mus musculus cD est D N I 1.5 0.14 NC 0 0 D 1.7 0.4 L24554 “Mus musculus adenylosuccinate synthetase mRNA, comp gene C N I 1.7 0.13 I 3.1 0.78 NC 0 0 W07963 mb45h07.r1 Soares mouse p3NMF19.5 Mus musculus cDN est C N I * 1.7 0.13 I * 2.8 0.63 NC 0 0 X02452 Mouse ki-ras cellular oncogene exon 1 from Y1 adrenal tu gene B N I * ˜1.8 0.13 I * ˜2.6 0.36 NC * 0 0 W45817 mc80d09.r1 Soares mouse embryo NbME13.5 14.5 Mus m est D N I * ˜1.7 0.13 I * ˜2.5 0.36 MI * 1.4 0.1 U52951 “Mus musculus putative transcnptional regutator mEnx-1 gene C N I * ˜1.9 0.13 I * ˜2.4 0.26 NC 0 0 AA014138 mh29a07:r1 Soares mouse placenta 4NbMP13.5 14.5 Mus est B N I 1.8 0.13 I 2.1 0.22 NC 0 0 W78418 me84ft2.r1 Soares mouse embryo NbM.E13.5 14.5 Mus m est A N I 1.8 0.13 I 2 0.19 NC 0 0 W17411 mb58c09.r1 Soares mouse p3NMF19.5 Mus musculus cD est D N I 1.3 0.13 I 1.3 0.19 NC 0 0 AA104315 mo50a06.r1 Life Tech mouse embryo 10 5dpc 10665016 est C N MI * ˜1.7 0.13 I * ˜1.9 0.18 NC * 0 0 Z54179 M. musculus mRNA (evolutionary conserved transcript) gene C N I 1.6 0.13 I 1.8 0.18 NC 0 0 U41751 “Mus musculus p53 responsive (E124) mRNA, complete cd gene B N I 1.5 0.13 I 1.5 0.11 NC 0 0 Y09419 M. musculus mRNA for spermine synthase gene C N I 1.6 0.13 I 1.5 0.11 NC 0 0 X65553 M. musculus mRNA for poly(A) binding Protein gene C N D 1.3 0.13 D 1.2 0.1 NC 0 0 L35528 “Mus musculus manganese superoxide dismutase (MnSOD gene A N I 1.7 0.13 I 1.5 0.09 NC 0 0 AA124273 mq22d04.r1 Barstead MPLRB1 Mus musculus cDNA clone est D N I 1.6 0.13 I 1.5 0.09 NC 0 0 X80638 M. musculus rhoC mRNA gene B N I 1.3 0.13 I 1.3 0.08 NC 0 0 X71422 M. musculus Hoxd-11 gene gene B N I * ˜1.7 0.13 MI * ˜1.5 0.07 NC 0 0 M98035 “Mus musculus guanine nucleotide exchange factor delta gene A N I 1.6 0.13 MI 1.4 0.07 MD 1.1 0 AA138105 mq30a03.r1 Barstead MPLRB1 Mus musculus cDNA clone est D N I 1.4 0.13 I 1.2 0.05 NC 0 0 M90316 “Mouse S37 (non-leukocyte isoform) mRNA, complete cd gene A N I 1.4 0.13 NC 0 0 D 1.5 0.2 W53694 md11e11.r1 Soares mouse embryo NbME13.5 14.5 Mus mu est A N I 1.5 0.13 NC 0 0 NC 0 0 AA068302 mm62a09.r1 Stratagene mouse embryonic carcinoma (#9 est A N I * 1.6 0.13 NC * 0 0 MD 1.2 0 U43836 “Mus musculus VEGF-related factor mvrf186 precursor mR gene B N I 1.6 0.13 NC 0 0 D 2.2 0.5 0 . L & 9 X59846 M. musculus GAS 6 mRNA associated with growth-arrest gene B N I 1.7 0.13 NC 0 0 MC 3.5 1.1 U58884 “Mus musculus SH3-contalning protein SH3P7 mRNA, com gene C N I 1.5 0.13 NC 0 0 D 1.5 0.2 X97796 M. musculus mRNA homologous to S. cerevisiae RAD54 gene C N MI * 1.9 0.13 NC * 0 0 NC 0 0 AA106625 mi87g11.r1 Stratagene mouse kidney (#937315) Mus mu est C N MD 1.8 0.13 NC 0 0 NC 0 0 AA114811 “mn17e12.r1 Beddington mouse embryonic region Mus mus est C N D 1.3 0.13 NC 0 0 NC 0 0 U64033 “Mus musculus Tera (Tera) mRNA, complete cds” gene C N I * ˜1.7 0.12 I * ˜3.1 0.58 NC 0 0 AA002604 mg44g304.r1 Soares mouse embryo NbME13.5 14.5 Mus m est B N I * ˜1.7 0.12 I * ˜3.0 0.55 I 1.7 0.1 W17482 mb60e11.r1 Soares mouse p3NMF19.5 Mus musculus cDN est D N I 1.6 0.12 I 2.3 0.47 I 1.4 0.2 U16322 “Mus musculus basic transcription factor MITF-2B mRNA, gene B N I * ˜1.7 0.12 I ˜2.4 0.3 NC 0 0 W34965 mc33d07.r1 Soares mouse p3NMF19.5 Mus musculus cD est D N I 1.5 0.12 I 1.9 0.3 I 1.2 0.1 M95408 “Mouse focal adhesion kinase mRNA, complete cds” gene D N I 1.7 0.12 I 1.8 0.16 NC 0 0 W13461 mb34g09.r1 Soares mouse p3NMF19.5 Mus musculus cD est D N I 1.4 0.12 I 1.4 0.15 NC 0 0 W71125 me31h04.r1 Soares mouse embryo NbME13.5 14.5 Musm est D N I 1.3 0.12 I 1.4 0.14 NC 0 0 AA035951 m170c01.r1 Soares mouse embryo NbME13.5 14.5 Mus mu est A N I 1.4 0.12 I 1.4 0.13 NC 0 0 AA124955 mp80g04.r1 Soares 2NbMT Mus musculus cDNA clone 57 est C N I 1.6 0.12 I 1.6 0.13 NC 0 0 AA120173 mn33h12.r1 Beddington mouse embryonic region Mus mus est C N I 1.4 0.12 I 1.4 0.12 NC 0 0 W13162 ma74d12.r1 Soares mouse p3NMF19.5 Mus musculus cDN est D N I 1.4 0.12 I 1.3 0.08 NC 0 0 Z71268 M. musculus mRNA for CMP-sialic acid transporter gene C N I * ˜1.9 0.12 I * ˜1.6 0.06 NC 0 0 U43144 “Mus musculus phospholipase C beta3 mRNA, complete c gene B N I 1.5 0.12 I 1.3 0.04 NC 0 0 W57021 md52b03.r1 Soares mouse embryo NbME13.5 14.5 Mus m est A N MI 1.7 0.12 NC 0 0 NC 0 0 U13878 “Mus musculus neural-restrictive silencer factor mRNA, p gene A N I * ˜1.6 0.12 I * ˜1.0 0 NC 0 0 W71692 me34f05.r1 Soares mouse embryo NbME13.5 14.5 Mus mu est A N MI * 1.8 0.12 NC * 0 0 NC 0 0 L05439 “Mouse insulin-like growth factor binding protein 2 (IGFBP gene A N I * 1.7 0.12 NC * 0 0 NC 0 0 X14972 Mouse mRNA for alpha-adaptin (C) gene B N I 1.5 0.12 NC 0 0 D 1.6 0.2 Z31399 M. musculus Ccth mRNA for CCT eta subunit (chaperonin gene B N MI 1.3 0.12 NC 0 0 NC 0 0 W89863 mf76107.r1 Soares mouse embryo NbME13.5 14.5 Mus mu est B N I 1.5 0.12 NC 0 0 D 1.3 0.1 AA071662 est C Y MI 1.4 0.12 NC 0 0 D 1.3 0.1 W29920 mc08e02.r1 Soares mouse p3NMF19.5 Mus musculus cD est D N I * 1.7 0.12 NC * 0 0 NC 0 0 AA162215 mn44b04.r1 Beddington mouse embryonic region Mus mus est D N I 1.7 0.11 I 2.3 0.35 MI 1.4 0.1 K02138 “Mouse germline IgM chain gene, mu-delta region” gene D N D 1.8 0.11 D 2.6 0.31 NC 0 0 AA103457 mo24g05.r1 Life Tech mouse embryo 13 5dpc 10666014 est D N I 1.6 0.11 I 2 0.23 MI 1.2 0 W34066 ma85b11.r1 Soares mouse p3NMF19.5 Mus musculus cD est D N I 1.4 0.11 I 1.6 0.22 NC 0 0 X98475 M. musculus VASP gene gene C N I 1.6 0.11 I 1.8 0.2 NC 0 0 AA007747 mg63a08.r1 Soares mouse embryo NbME13.5 14.5 Mus m est B N I * 1.8 0.11 I * 2 0.17 NC 0 0 AA116706 “mn20h06.r1 Beddington mouse embryonic region Mus mu est B N MI 1.5 0.11 MI 1.6 0.16 NC 0 0 AA168363 “ms30f07.r1 Stratagene mouse skin (#937313) Mus muscu est A N I * 1.8 0.11 I * 1.8 0.13 NC 0 0 D87117 “House mouse; Musculus domesticus brain mRNA for SAF gene C N I * ˜1.7 0.11 I * ˜1.8 0.13 NC 0 0 M25149 “Mouse Tum-P91A antigene gene, complete cds” gene D N I 1.4 0.11 I 1.5 0.13 NC 0 0 M85153 “M. musculus alpha-1,3-galactosyltransferase mRNA, comp gene D N I * 1.7 0.11 I * 1.7 0.1 NC 0 0 RNL+/+-IFN/EMCV M63245 “Mus musculus amino levulinate synthase (ALAS-H) mRNA gene B N MI 1.5 0.11 I 1.4 0.08 NC 0 0 AA073769 mm96d12.r1 Stratagene mouse heart (#937316) Mus musc est C N I 1.6 0.11 MI 1.5 0.06 NC 0 0 M30127 “Mouse MHC class 1 tum- transplantation antigene mRNA P gene D N I 1.5 0.11 I 1.4 0.06 NC 0 0 L36244 “Mus musculus metalioproteinase matrilysin mRNA, compl gene B N MI * ˜1.6 0.11 NC * 0 0 NC * 0 0 M60559 “Mus musculus Swiss Webster beta-B2 crystallin mRNA, c gene C N MD * 1.8 0.11 NC * 0 0 NC * 0 0 W59540 est A Y I * ˜1.9 0.11 I * 0 0 NC 0 0 L21973 “Mus musculus F2F1 mRNA, complete cds” gene A N I * 1.7 0.11 NC * 0 0 MD 1.2 0 W90864 mf79d08.r1 Soares mouse embryo NbME13.5 14.5 Mus m est B N I * 1.6 0.11 NC * 0 0 D 1.4 0.1 W35899 mc53h11.r1 Soares mouse embryo NbME13.5 14.5 Mus m est D N I * ˜1.7 0.11 NC * 0 0 D 2.1 0.2 U44940 “Mus musculus quaking type I (QKI) mRNA, complete cds” gene B N I * ˜1.6 0.1 I * ˜2.7 0.44 MI 1.7 0.1 AA137902 mq01b11.r1.Soares 2NbMT Mus musculus cDNA clone 5 est D N I * ˜1.7 0.1 I * ˜2.8 0.43 NC 0 0 X81464 M. musculus mRNA for translin gene B N I 1.6 0.1 I 2.1 0.27 NC 0 0 W64785 “md 89 d11.r1 Soares mouse embryo NbME13.5.14.5 Mus m est D N I * ˜1.7 0.1 I * ˜2.2 0.26 NC 0 0 AA119121 mp56h01.r1 Soares 2NbMT Mus musculus cDNA clone 57 est B N I 1.6 0.1 I 2 0.25 NC 0 0 AA154444 mq47d04.r1 Soares 2NbMT Mus musculus cDNA clone 5818 est B N I 1.6 0.1 MI 1.9 0.23 NC 0 0 AA002883 “mg41d10.r1 Soares mouse embryo NbME13.5 14.5 Mus m est D N I * ˜1.6 0.1 I * ˜2.1 0.22 NC 0 0 W12383 ma67c12.r1 Soares mouse p3NMF19.5 Mus musculus cD est D N I * 1.7 0.1 I * 1.8 0.13 NC 0 0 M27960 “Mouse interleukin-4 receptor (secreted form) mRNA, com gene D N I * 1.6 0.1 I * 1.7 0.12 NC 0 0 W13875 “mb36g03.r1 Soares mouse p3NMF19.5 Mus musculus cDN est C N MI 1.2 0.1 I 1.3 0.11 NC 0 0 AA060106 mj71g09.r1 Soares mouse p3NMF19.5 Mus musculus cD est D N I * 1.8 0.1 I * 1.7 0.08 NC 0 0 U04299 “Mus musculus BALB/c mannosyl-oligosaccharide alpha-1, gene B N I 1.6 0.1 MI 1.5 0.07 NC 0 0 U48804 “Mus musculus Zn-finger protein Pw1 gene, complete cds gene C N I * ˜1.6 0.1 I * ˜1.5 0.06 NC 0 0 W98100 me73h07.r1 Soares mouse embryo NbME13.5 14.5 Mus m est A N I * ˜1.7 0.1 I * ˜1.4 0.05 NC 0 0 M24119 “Mouse glucocerebrosidase mRNA, complete cds” gene D N I 1.5 0.1 I 1.2 0.03 NC 0 0 L21674 “Mouse Eps8 mRNA sequence, complete cds” gene A N I * ˜1.8 0.1 I * ˜1.2 0.02 D 1.4 0.1 U04672 “Mus musculus type I receptor BRK-1 mRNA, complete cd gene C N I * ˜1.7 0.1 I * ˜1.1 0.01 NC * 0 0 M64086 “Mouse spl2 proteinase inhibitor (sp12/eb4) mRNA, comp gene A N MI * 1.6 0.1 I * 0 0 NC * 0 0 AA015076 mh15f10.r1 Soares mouse placenta ANbMP13.5 14.5 Mus m est A N I * 1.5 0.1 NC * 0 0 NC 0 0 W55789 est A Y I 1.5 0.1 NC 0 0 NC 0 0 U24700 “Mus musculus protein tyrosine phosphatase (mbptp1b) n gene A N I 1.6 0.1 NC 0 0 MC 1.4 0.1 W83523 mf29g05.r1 Soares mouse embryo NbME13.5 14.5 Mus m est B N I * 1.8 0.1 NC * 0 0 NC 0 0 U27340 “Mus musculus sulfated glycoprotein (Sgp1) mRNA, comp gene B N I 1.3 0.1 NC 0 0 D 1.6 0.3 X61147 M. musculus mRNA for iron responsive element binding pro gene B N I 1.6 0.1 NC 0 0 D 1.4 0.1 X56690 Mouse mRNA for modifier 1 protein gene B N I * 1.7 0.1 NC * 0 0 NC 0 0 U40930 “Mus musculus oxidative stress-induced protein mRNA, co gene C N I 1.3 0.1 NC 0 0 D 1.3 0.1 W85446 mf45d10.r1 Soares mouse embryo NbME13.5 14.5 Mus m est C N MI 1.5 0.1 NC 0 0 NC 0 0 AA123389 mq73b09.r1 Stratagene.mouse melanoma (#937312) Mus est C N I * ˜1.7 0.1 * 0 0 NC 0 0 D82019 “Mouse gene for basigin, complete cds (exon1-7)” gene D N MI 1.3 0.1 NC 0 0 NC 0 0 X97281 M. musculus mRNA for K+ chanel beta subunit gene C N I * ˜1.7 0.09 I * ˜2.4 0.26 NC 0 0 Z67746 “M. musculus mRNA for phosphatase 2A catalytic subunit, gene B N MI 1.5 0.09 I 1.8 0.2 NC 0 0 J00423 “Mouse hypoxanthine phosphoribosyltransferase (hprt) mf gene B N I 1.4 0.09 I 1.5 0.18 NC 0 0 W98152 mg13g01.r1 Soares mouse embryo NbME13.5 14.5 Mus mu est A N I * ˜1.7 0.09 * ˜1.9 0.16 NC 0 0 U13053 “Mus muscuus Ras-like protein (kir) mRNA, compete cds” gene A N I * ˜1.7 0.09 MI * ˜1.8 0.12 NC 0 0 X95403 M. musculus mRNA for GTP-binding protein gene C N I 1.4 0.09 I 1.5 0.11 NC 0 0 AA117128 mn05f10.r1 B eddington mouse embryonic region Mus musc est C N I * ˜1.6 0.09 * ˜1.7 0.11 NC 0 0 X80685 M. musculus gMCK2-beta gene gene B N I 1.3 0.09 MI 1.2 0.06 NC 0 0 AA000961 mg38f01.r1 Soares mouse embryo NbME13.5 14.5 Mus m est D N I 1.5 0.09 I 1.4 0.06 NC 0 L01776 “Mus musculus neuronal dihydropyridine-sensitive L-type gene D N I * ˜1.7 0.09 I * ˜1.5 0.06 NC 0 0 X70842 M. musculus Flk-1 mRNA gene B N MI * ˜1.6 0.09 I * 1.4 0.04 NC 0 0 U21103 “Mus musculus mammary gland factor (Stat5a) mRNA, co gene A N I * ˜1.5 0.09 I * ˜1.2 0.02 NC 0 0 AA050055 mj17f01.r1 Soares mouse embryo NbME13.5 14.5 Mus m est A N MI 1.4 0.09 NC 0 0 NC 0 0 W54339 md05f06.r1 Soares mouse embryo NbME13.5 14.5 Mus mu est A N I 1.6 0.09 NC 0 0 D 1.3 0 L04302 “Mouse thrombospondin 3 (THB SP3) mRNA, complete cd gene A N I * 1.7 0.09 NC * 0 0 MD 3 0.5 U09874 “Mus musculus SKD3 mRNA, complete cds” gene A N MI 1.5 0.09 NC 0 0 NC 0 0 U12147 “Mus musculus laminin-2 alpha2 chain mRNA, complete c gene A N I 1.7 0.09 NC 0 0 NC 0 0 AA110896 mp62a09.r1 Soares 2NbMT Mus musculus cDNA clone 5737 est A N I 1.3 0.09 NC 0 0 D 1.4 0.2 X61432 M. musculus mRNA for calmodulin gene A N I 1.3 0.09 NC 0 0 D 1.1 0 U17297 “Mus musculus integral membrane phosphoprotein band gene A N I * 1.5 0.09 NC * 0 0 NC 0 0 U27315 “Mus musculus adenine nucleotide translocase-1 (Ant1) m gene C N MI 1.3 0.09 NC 0 0 NC 0 0 D49730 “Mouse mRNA for V1a agrinine vasopression receptor, co gene C N MI * 1.7 0.09 NC * 0 0 NC 0 0 M21828 “Mus growth-arrest-specific (gas2) protein mRNA, com gene D N I 1.7 0.09 NC 0 0 NC 0 0 M38337 “Mouse milk fat globule membrane protein E8 mRNA, com gene D N I 1.3 0.09 MI 1 0 NC 0 0 V00836 Mouse mRNA encoding nerve growth factor (NGF) gene D N I * ˜1.6 0.08 I * ˜3.4 0.67 I 2.1 0.4 M38381 “Mouse serine threonine tyrosine kinase (STY) mRNA, com gene A N I * ˜1.5 0.08 I * ˜2.0 0.2 NC 0 0 M23529 “Mus musculus complement receptor (CRY) mRNA, comp gene A N I 1.4 0.08 I 1.7 0.19 NC 0 0 M17327 “Mouse endogeneous murine leukemia virus modified polyt gene D N MI 1.5 0.08 I 1.7 0.18 NC 0 0 W33728 mc55h05.r1 Soares mouse embryo NbME13.5 14.5 Mus mus est D N I 1.3 0.08 I 1.5 0.16 NC 0 0 W87078 mf56g03.r1 Soares mouse embryo NbME13.5 14.5 Mus mu est D N I * 1.6 0.08 I * 1.9 0.15 NC 0 0 AA023107 mh66a12.r1 Soares mouse placenta 4NbMP13.5 14.5 Mus est B N I * 1.6 0.08 I * 1.9 0.14 NC 0 0 Z36270 M. musculus mRNA for GC Binding Protein gene B N I 1.6 0.08 I 1.9 0.14 NC 0 0 U42190 “Mus musculus GJT-mismatch binding protein (Gtmbp) mP gene C N MI * ˜1.6 0.08 I * ˜1.9 0.14 NC 0 0 M63903 “Mus musculus B /HLH/Z protein (Myn) RNA, complete c gene A N I 1.4 0.08 I 1.5 0.12 NC 0 0 AA109831 m198e04.r1 Stratagene mouse kidney (#9.37315) Mus musc est C N MI * ˜1.6 0.08 I * ˜1.7 0.1 NC 0 0 W97919 mg4c10.r1 Soares mouse embryo NbME13.5 14.5 Mus est A N I * ˜1.5 0.08 I * ˜1.5 0.09 NC 0 0 X76850 M. musculus mRNA for MAP kinase-activated protein kinase gene B N I 1.5 0.08 I 1.5 0.09 NC 0 0 AA137432 mq81d03.r1 Stratagene mouse melanoma (#937312) Mus est D N I * ˜1.5 0.08 I * ˜1.5 0.09 NC 0 0 W13304 mb17c09.r1 Soares mouse p3NMF19.5 Mus musculus cD est D N I 1.5 0.08 I 1.4 0.06 NC 0 0 AA000102 mg31a08.r1 Soares mouse embryo NbME13.5 14.5 Mus est D N I 1.6 0.08 I 1.4 0.06 NC 0 0 L35034 “Mus musculus ribose 5-phosphate isomerase (RPI) mRNA gene A N I * ˜1.7 0.08 I * ˜1.4 0.04 NC 0 0 L05670 “Mus musculus alpha-clustrin and beta-clustrin mRNA, com gene A N I 1.5 0.08 I 1.3 0.04 NC 0 0 X63039 M. musculus RSP-1 mRNA for p33 protein gene C N I 1.4 0.08 I 1.2 0.04 NC 0 0 U20892 “Mus musculus glycinamide ribonucleotide synthetase an gene C N MI 1.4 0.08 MI 1.3 0.04 NC 0 0 AA105716 “mm66f07.r1 Stratagene mouse macrophage (#937306) M est C N MD * ˜1.5 0.08 NC * 0 0 NC 0 0 AA137871 mq75d01.r1 Stratagene mouse melanoma (#937312) Mus est C N I * ˜1.5 0.08 NC * 0 0 NC 0 0 AA044561 “mj12g04.r1 Soares mouse embryo NbME13.5 14.5 Mus mus est A N I 1.3 0.08 NC 0 0 D 1.7 0.5 U13837 “Mus musculus vacuolar adenosine triphosphatase subuni gene B N I * 1.7 0.08 NC * 0 0 MD 1.5 0.1 U51167 “Mus musculus isocitrate dehydrogenease mRNA, complet gene B N I 1.3 0.08 NC 0 0 NC 0 0 570056 “zeta-crystallin [Mus musculus=mice, liver, mRNA, 2025 gene B N I 1.5 0.08 NC 0 0 NC 0 0 X65582 M. musculus mRNA for alpha-2 collagen VI gene B N I 1.3 0.08 NC 0 0 D 1.3 0.2 Z31555 M. musculus (129 Sv) bcte mRNA for CCT (chaperonin co gene B N MI 1.2 0.08 NC 0 0 NC 0 0 M33934 “Mouse IMP dehydrogenease mRNA, complete cds” gene C N MI 1.3 0.08 NC 0 0 NC 0 0 X63747 M. musculus Zfp-38 mRNA gene D N I * 1.6 0.08 NC * 0 0 NC 0 0 U39192 “Mus musculus heparin-binding epidermal growth factor-III gene D N I 1.5 0.07 I 4.9 2.04 I 3.2 1.7 X06746 Mouse mRNA for Krox-20 protein contalning zinc fingers gene D N I * 1.5 0.07 I * 3.2 0.94 I 2.1 0.6 AA146248 m188g08.r1 Stratagene mouse melanoma (#937312) Mus est B N I * 1.7 0.07 I * 2.9 0.41 I 1.7 0.1 X82786 M. musculus mRNA for Ki-67 gene B N I * ˜1.5 0.07 I * ˜2.4 0.32 I 1.6 0.1 U19617 “Mus musculus Ets-family transcription factor Elf-1 mRNA gene C N I * ˜1.6 0.07 I * ˜2.5 0.32 MI 1.6 0.1 L10244 “Mouse spermidine/spermine N1-acetyltransferase (SSAT) gene B N I 1.3 0.07 I 1.7 0.28 I 1.3 0.1 W29163 mb96c11.r1 Soares mouse p3NMF19.5 Mus musculus cD est D N I 1.4 0.07 I 1.8 0.26 I 1.3 0.1 W61610 md82e04.r1 Soares mouse embryo NbME13.5.14.5 Mus m est A N MI * 1.5 0.07 I 1.9 0.2 NC 0 0 X55318 Mus musculus Hox-3.2 gene gene D N I * 1.7 0.07 I * 2.2 0.19 MI 1.3 0 L04966 “Mus musculus ras-related protein (rab18) mRNA, comple gene D N I * ˜1.6 0.07 I * ˜1.8 0.13 NC 0 0 W78604 m81g10.r1 Soares mouse embryo NbME13.5 14.5 Mus m est A N I * ˜1.6 0.07 I * ˜1.8 0.11 NC 0 0 U18996 “Mus musculus growth factor receptor binding protein (G gene A N I 1.6 0.07 I 1.8 0.12 NC 0 0 X89749 M. musculus mRNA for mTGIF protein gene C N I 1.4 0.07 I 1.6 0.11 NC 0 0 AA111268 mo53b03.r1 Life Tech mouse embryo 10 5dpc 10665Q16 M est C N MI * ˜1.6 0.07 I * ˜1.8 0.1 NC 0 0 AA049237 “mj51a05.r1 Soares mouse embryo NbME13.5 14.5 Mus m est B N I 1.4 0.07 I 1.5 0.1 NC 0 0 W13646 ma93f05.r1 Soares mouse p3NMF19.5 Mus musculus cD est C N I 1.2 0.07 I 1.3 0.1 NC 0 0 X99641 M. musculus mRNA for HP1 alpha protein gene C N I * 1.6 0.07 I * 1.7 0.08 NC 0 0 AA028398 “m120b02.r1 Soares mouse p3NMF19.5 Mus musculus cD est D N I 1.2 0.07 I 1.3 0.08 NC 0 0 AA120290 mn16c06.r1 Beddington mouse embryonic region Mus musc est B N I 1.6 0.07 I 1.4 0.04 NC 0 0 W51237 est A Y I 1.3 0.07 I 1.2 0.03 NC 0 0 Z48043 M. musculus mRNA for proteinase activated receptor 2 gene B N I * ˜1.5 0.07 NC * 0 0 NC 0 0 AA033424 m136b07.r1 Soares mouse embryo NbME13.5 14.5 Mus m est A N I 1.4 0.07 NC 0 0 NC 0 0 W61804 est A Y MI * ˜1.4 0.07 MI * ˜1.0 0 NC 0 0 W62643 md82a07.r1 Soares mouse embryo NbME13.5 14.5 Mus m est A N I * ˜1.6 0.07 NC * 0 0 D 1.4 0.1 AA073679 “mm96e05.r1 Stratagene mouse heart (#037316) Mus musc est A N I 1.5 0.07 NC 0 0 MC 1.3 0.1 X61800 M. musculus mRNA for C/EBP delta gene B N MI 1.3 0.07 NC 0 0 NC 0 0 AA067929 mm44b12.r1 Stratagene mouse melanoma (#937312) Mus est C N I 1.5 0.07 NC 0 0 NC 0 0 U34259 “Mus musculus Golgi 4-transmembrane spanning transport gene C N MI 1.2 0.07 NC 0 0 NC 0 0 U49385 “Mus musculus CTP synthetase homolog (CTPsH) mRNA, gene C N I 1.6 0.07 NC 0 0 NC 0 0 D21099 “Mouse mRNA for STK-1 (serine/threonine kinase), compl gene C N I * 1.5 0.07 NC 0 0 NC 0 0 W64791 md89fD9.r1 Soares mouse embryo NbME13.5 14.5 Mus m est D N MI 1.3 0.07 I 1.1 0 NC 0 0 AA14516 ms10c1.r1 Stratagene mouse skin (#937313) Mus muscu est D N I 1.3 0.06 I 2.3 0.58 I 1.7 0.4 U28016 “Mus musculus parathion hydrolase (phosphotriesterase)- gene A N I * 1.6 0.06 I * 2.7 0.39 NC 0 0 D43643 “Mouse YL-1 mRNA for YL-1 protein (nuclear protein with gene C N I * 1.5 0.06 I * 2.2 0.28 NC 0 0 W54228 mc94b11.r1 Soares mouse embryo NbME13.5 14.5 Mus m est D N I 1.4 0.06 I 1.9 0.21 NC 0 0 L00993 “Mus musculus autoantigene La (SS-B) mRNA, complete cd gene D N I * ˜1.5 0.06 I * ˜2.0 0.17 NC 0 0 U20371 “Mus musculus homeobox protein (Hoxa11) gene, comple gene B N I * ˜1.4 0.06 I * ˜1.9 0.16 I 1.3 0 Z22703 M. musculus keratinocyte growth factor Fgf-7 est B N I * ˜1.5 0.06 I * ˜1.9 0.16 NC 0 0 D63784 “Mouse mRNA for MDA1, complete cds” gene A N I * ˜1.4 0.06 I * ˜1.7 0.14 NC 0 0 M13019 “Mouse thymidylate synthase mRNA, complete cds” gene A N I 1.3 0.06 I 1.5 0.13 NC 0 0 W85270 mf42d05.r1 Soares mouse embryo NbME13.5 14.5 Mus mu est D N I 1.3 0.06 I 1.4 0.13 NC 0 0 M21495 “Mouse cytoskeletal gamma-actin mRNA, complete cds” gene D N I 1.1 0.06 MI 1.2 0.12 NC 0 0 M77831 “Mouse binding protein 13 (Fkbp13)gene exons 1-5, com gene D N I 1.4 0.06 I 1.5 0.09 NC 0 0 U59463 “Mus musculus ICH-3 mRNA, complete cds” gene C N I * 1.5 0.06 I * 1.5 0.06 NC 0 0 D87661 “House mouse; Musculus domesticus mRNA for 14-3-3 et gene C N I 1.3 0.06 I 1.3 0.05 NC 0 0 U21489 “Mus musculus long-chain acyl-COA dehydrogenease mRN gene D N I 1.4 0.06 I 1.4 0.05 NC 0 0 W12720 ma52dD7.r1 Soares mouse p3NMF19.5 Mus musculus cD est D N I * ˜1.4 0.06 I * ˜1.3 0.05 NC 0 0 L15447 “Mouse small nuclear RNA (Rnu1a-1) mRNA, complete cd gene D N I 1.3 0.06 I 1.2 0.02 NC 0 0 AA163866 ms52d09.r1 Life Tech mouse embryo 13 5dpc 10666014 M est B N MD 1.4 0.06 D 1.1 0.01 NC 0 0 L00923 “Mouse myosin I mRNA, complete cds” gene A N I * 1.6 0.06 NC * 0 0 NC 0 0 AA059550 mj63e07.r1 Soares mouse p3NMF19.5 Mus musculus cDN, est A N I 1.6 0.06 NC 0 0 NC 0 0 AA064330 mj67g07.r1 Soares mouse p3NMF19.5 Mus musculus cDN est A N MI 1.4 0.06 NC 0 0 NC 0 0 U17132 “Mus musculus zinc transporter ZnT-1 (ZnT-1) gene, com gene A N MI * 1.5 0.06 MI * 0 0 NC 0 0 AA117106 mo60a10.r1 Stratagene mouse Tcell 937311 Mus muscul est A N I 1.2 0.06 NC 0 0 D 1.7 0.4 D10576 Mouse mRNA for ubiquitin activating enzyme E1 gene B N I 1.2 0.06 NC 0 0 NC 0 0 X76505 M. musculus (C57B1/6) Tyro 10 mRNA gene B N I 1.4 0.06 NC 0 0 NC 0 0 M84145 “Mouse fumarylacetoacetate hydrolase (Fah) mRNA, com gene D N I * 1.6 0.06 NC * 0 0 NC 0 0 W41745 mc63b06.r1 Soares mouse embryo NbME13.5 14.5 Mus m est D N I 1.5 0.06 NC * 0 0 NC 0 0 AA124985 mp74d03.r1 Soares 2NbMT Mus musculus cDNA clone 574 est D N I * ˜1.4 0.06 NC 0 0 NC 0 0 M92088 “Mus musculus type II hair keratin mRNA, 3′ end” gene D N I 1.5 0.06 NC 0 0 NC 0 0 M31885 “Mouse helix-loop-helix DNA binding protein regulator (Id) gene D N I 1.3 0.05 I 3.8 2.04 I 2.9 2 J04596 “Mouse platelet-derived growth factor-inducible KC protein gene A N I * ˜1.5 0.05 I * ˜2.8 0.4 NC 0 0 W10459 “ma44f11.r1 Soares mouse p3NMF19.5 Mus musculus cDN est C N MD 1.2 0.05 D 1.5 0.25 D 1.3 0.1 M63658 “M. musculus G protein beta-subunit mRNA, complete cds gene D N I 1.4 0.05 I 2 0.24 MI 1.4 0.1 X57337 M. musculus CDNAp14 mRNA gene C N I 1.1 0.05 D 1.3 0.15 D 1.5 0.4 U39473 “Mus musculus histidyl-mRNA synthetase mRNA, complete gene C N I 1.4 0.05 I 1.5 0.07 NC 0 0 AA022254 est B Y I * 1.6 0.05 MI * 1.6 0.06 NC 0 0 W91222 mf85c05.r1.Soares mouse embryo NbME13.5 14.5 Mus m est B N I * 1.4 0.05 I * 1.4 0.06 NC 0 0 W64294 me03a03.r1 Soares mouse embryo NbME13.5 14.5 Mus est A N MD ˜1.3 0.05 MC ˜1.3 0.05 NC * 0 0 AA153540 ms15b04.r Stratagene mouse skin (#937313) Mus muscu est D N D ˜1.4 0.05 MC ˜1.4 0.05 NC * 0 0 D14883 “Mouse mRNA for C33/R2/IA4, complete cds” gene A N I * 1.5 0.05 I * 1.3 0.02 NC 0 0 AA036574 “m169e05.r1 Soares mouse embryo NbME13.5 14.5 Mus mu est A N I 1.4 0.05 I 1.1 0.01 NC 0 0 U46187 “Mus musculus KRAB-containing zinc finger protein mRNA gene C N MI * 1.4 0.05 NC * 0 0 NC * 0 0 AA114623 mn16d09.r1 Beddington mouse embryonic region Mus mu est C N I * ˜1.4 0.05 NC * 0 0 NC * 0 0 AA153522 ms61h12.r1 Stratagene mouse embryonic carcinoma (#9 est D N MD * ˜1.6 0.05 NC * 0 0 I * 1.3 0 L11739 “Mus musculus homeobox HOX8.1 (Msx2) gene, exon 2 gene A N I 1.5 0.05 NC 0 0 NC 0 0 U34691 “Mus musculus uroporphyrinogene decarboxylase mRNA, c gene A N I 1.3 0.05 NC 0 0 NC 0 0 AA002979 mg41c04.r1 Soares mouse embryo NbME13.5 14.5Mus mu est B N I 1.4 0.05 NC 0 0 NC 0 0 AA062342 ml35h10.r1 Stratagene mouse testis (#937308) Mus musc est B N I * ˜1.4 0.05 NC * 0 0 D ˜2.4 0.3 Z38015 “M. musculus DMR-N9 gene, exons 4 and 5, and DM-Pk g gene B N I 1.5 0.05 NC 0 0 D 2 0.2 Y00225 “Murine mRNA for J1 protein, yeast ribosomal protein L3 gene B N MD 1.1 0.05 NC 0 0 NC 0 0 U53455 “Mus musculus chloride ion current inducer protein (CLCI) gene C N I 1.4 0.05 NC 0 0 NC 0 0 U49350 “Mus musculus CTP synthetase mRNA, complete cds” gene C N MI 1.4 0.05 NC 0 0 NC 0 0 AA087605 mm88e09.r1 Stratagene mouse embryonic carcinomaRA ( est C N I 1.3 0.05 NC 0 0 NC 0 0 AA098588 mn83h08.r1 Stratagene mouse Tcell 937311 Mus muscul est C N I * ˜1.5 0.05 NC * 0 0 NC 0 0 Y07711 M. musculus mRNA for zyxin gene C N MI 1.2 0.05 NC 0 0 D 1.2 0.1 L24755 “Mus musculus bone morphogenetic protein (Bmp-1) mR gene D N I 1.3 0.05 NC 0 0 NC 0 0 W13739 mb32b10.r1 Soares mouse p3NMF19.5 Mus musculus cDN est D N I 1.6 0.05 NC 0 0 NC 0 0 J05265 “Mouse interferon gamma receptor mRNA, complete cds” gene D N MI 1.4 0.05 NC 0 0 NC 0 0 W71881 me45h01.r1 Soares mouse embryo NbME13.5 14.5 Mus m est D N I * 1.4 0.05 NC * 0 0 NC 0 0 M81477 “Mouse cytoplasmic phosphotyrosine phosphatase mRNA, gene D N MI * 1.4 0.04 I * 2.4 0.29 I 1.7 0.2 L15429 “Mus musculus L6 antigene mRNA, complete cds” gene B N MI 1.2 0.04 I 1.5 0.28 I 1.3 0.2 X66295 M. musculus mRNA for C1q C-chain. gene B N MI * ˜1.3 0.04 I * ˜2.2 0.24 NC * 0 0 M58691 “Mouse growth factor-inducible protein mRNA, complete( gene A N I 1.3 0.04 I 1.9 0.23 NC 0 0 D38517 “Mouse mRNA for Dhm1 protein, complete cds” gene A N I 1.4 0.04 I 1.7 0.11 NC 0 0 M27073 “Mus musculus protein phosphatase type 1 (dis2m2) mF gene D N I * ˜1.5 0.04 I * ˜1.9 0.11 NC 0 0 W42216 mc69h11.r1 Soares mouse embryo NbME13.5 14.5 Mus m est D N I * 1.3 0.04 I * 1.6 0.1 NC 0 0 AA146437 mr05a08.r1 Soares mouse 3NbMS Mus musculus cDNA clo est B N I * ˜1.3. 0.04 I * ˜1.4 0.06 NC 0 0 X13752 Murine mRNA for delta-aminolevulinate dehydratase (EC gene B N I 1.3 0.04 I 1.3 0.05 NC 0 0 M63660 “Mouse G-alpha-13 protein mRNA, complete cds” gene D N I * ˜1.3 0.04 I * ˜1.4 0.05 NC 0 0 M76987 Mouse alpha-globin transcription factor CP2 mRNA sequen gene D N I * ˜1.4 0.04 MI * 1.3 0.02 NC 0 0 M25513 “Mouse rod transducin alpha subunit (Tr-alpha) gene, exo gene A N MD * ˜1.4 0.04 NC * 0 0 NC * 0 0 W08715 mb51a12.r1 Soares mouse p3NMF19.5 Mus musculus cD est B N MI * ˜1.4 0.04 NC * 0 0 NC * 0 0 AA067335 mm39e02.r1 Stratagene mouse melanoma (#9.37312) Mu est C N I * ˜1.2 0.04 NC * 0 0 NC * 0 0 W11011 ma47a11.r1 Soares mouse p3NMF19.5 Mus musculus cD est C N MI * 1.4 0.04 MI * 0 0 NC * 0 0 AA061225 ml31b12.r1.Soares mouse embryo NbME13.5 14.5 Mus m est A N MI 1.2 0.04 NC 0 0 MD 1.1 0 AA059517 mj61c11.r1 Soares mouse embryo NbME13.5.14.5 Mus m est A N MI 1.4 0.04 NC 0 0 D 2.3 0.4 AA008043 mg68e02.r1 Soares mouse embryo NbME13.5 14.5 Mus m est A N MI 1.2 0.04 NC 0 0 NC 0 0 U25995 “Mus musculus cell death protein (RIP) mRNA, complete c gene A N I * ˜1.5 0.04 NC 0 0 D 1.3 0 U29173 “Mus musculus lymphotoxin-beta receptor mRNA, comple gene A N I 1.3 0.04 NC 0 0 MC 1.5 0.1 D37801 Mouse mRNA for protein tyrosine phosphatase gene A N MI 1.3 0.04 NC 0 0 MC 1.2 0 L21027 “Mus musculus A10 mRNA, partial cds” gene A N MI 1.1 0.04 NC 0 0 D 1.3 0.2 U30482 “Mus musculus TR2 (mTR2) mRNA, complete cds” gene A N I * ˜1.3 0.04 NC * 0 0 NC 0 0 AA002437 mg54g06.r1 Soares mouse embryo NbME13.5 14.5 Mus mL est B N I 1.3 0.04 NC 0 0 NC 0 0 U25652 “Mus musculus collagene type XII alpha-1 precursor (Col12 gene B N I * 1.4 0.04 NC * 0 0 NC 0 0 X15830 Murine mRNA for neuroendocrine protein 7B2 gene B N I * 1.4 0.04 NC * 0 0 NC 0 0 Z19581 M. musculus siah-2 protein mRNA gene C N MI 1.3 0.04 NC 0 0 MC 1.4 0.1 J02995 “Mouse.testis-specific c-abl protein mRNA, complete cds” gene D N I 1.3 0.04 NC 0 0 NC 0 0 W29462 mb99b12.r1 Soares mouse p3NMF19.5 Mus musculus cD est D N I * 1.3 0.04 NC * 0 0 NC 0 0 J05205 “Mouse junD proto-oncogene mRNA, complete cds” gene D N MI 1.2 0.04 NC 0 0 D 1.3 0.2 X57796 Mouse mRNA for 55-kDa tumor necrosis factor receptor gene D N I 1.2 0.04 NC 0 0 NC 0 0 AA114781 mn14h10.r1 Beddington mouse embryonic region Mus mu est C N I * ˜1.3 0.03 I * ˜2.6 0.35 I 2 0.2 AA170223 ms60f01.r1 Stratagene mouse embryonic carcinoma (#937 est D N I * ˜1.3 0.03 I * ˜2.4 0.33 NC 0 0 AA027739 mi14g01.r1 Soares mouse p3NMF19.5 Mus musculus cDNA est D N I 1.3 0.03 I 2 0.28 I 1.5 0.2 M37759 “Mouse serine 1 ultra high sulfur protein gene, complete ( gene A N MI 1.3 0.03 I 1.8 0.15 NC 0 0 W33550 mc52f06.r1 Soares mouse embryo NbME13.5 14.5 Mus mu est D N I 1.2 0.03 I 1.4 0.07 NC 0 0 D90173 “Mouse mRNA for NFJ-B protein, clone NFJ-B2” gene C N I * ˜1.2 0.03 I * ˜1.4 0.06 NC 0 0 D12644 “Mouse mRNA for KIF2 protein, complete cds” gene B N I * ˜1.3 0.03 I * ˜1.4 0.05 NC 0 0 AA108956 mp41e04.r1 Barstead MPLRB1 Mus musculus cDNA clone est B N I 1.2 0.03 I 1.2 0.04 NC 0 0 X58069 Mouse mRNA for Histone H2A.X gene D N I 1.2 0.03 I 1.2 0.04 NC 0 0 M35662 “Mouse placental lactogene I (PL-I) mRNA, complete cds” gene D N D * ˜1.3 0.03 MD * ˜1.3 0.03 NC 0 0 U72141 “Mus musculus muitiple exostoses 2 protein (EXT2) mRN gene C N I 1.2 0.03 I 1.2 0.03 NC 0 0 AA142796 mq63e08.r1 Soares 2NbMT Mus musculus cDNA clone 58 est D N I * 1.3 0.03 I * 1.3 0.02 NC 0 0 U10903 “Mus musculus zinc finger protein (RP-8) mRNA, complete gene A N I 1.3 0.03 I 1.1 0.01 NC 0 0 AA105509 mo57b06.r1 Life Tech mouse embryo 8 5dpc 10664019 M est C N I * ˜1.3 0.03 MI * ˜1.1 0.01 NC 0 0 U10871 “Mus musculus MAP kinase mRNA, complete cds” gene C N I 1.3 0.03 I 1.2 0.01 NC 0 0 W12919 ma89f02.r1 Soares mouse p3NMF19.5 Mus musculus cDN est D N I 1.2 0.03 I 1.1 0.01 NC 0 0 W77226 me63e01.r1 Soares mouse embryo NbME13.5 14.5 Mus m est D N I * 1.4 0.03 I * 1.2 0.01 NC 0 0 AA166391 ms39b09.r1 Life Tech mouse embryo 13 5dpc 0666014 est D N I * ˜1.2 0.03 I * ˜1.0 0 NC * 0 0 D17630 “Mouse mRNA for interleukin-8 receptor (IL-8R), complet gene D N MD * ˜1.2 0.03 NC * 0 0 NC * 0 0 AA068780 mm64g04.r1 Stratagene mouse embryonic carcinoma (#937 est A N I 1.2 0.03 NC 0 0 D 1.7 0.3 M74773 “Mus musculus brain beta spectrin (Spnb-2) mRNA, comp gene A N MI 1.3 0.03 NC 0 0 NC 0 0 W66781 me17c12.r1 Soares mouse embryo NbME13.5 14.5 Mus m est A N I 1.2 0.03 NC 0 0 D 1.2 0.1 75918 me82f05.r1 Soares mouse embryo NbME13.5 14.5 Mus mu est A N I 1.3 0.03 NC 0 0 NC 0 0 AA063985 mj31c01.r1 Soares mouse embryo NbME13.5 14.5 Mus m est A N I * ˜1.3 0.03 I * ˜1.0 0 NC 0 0 D49956 “Mouse mRNA for 8-oxo-dGTPase, complete cds” gene A N I 1.3 0.03 NC 0 0 D 2.6 0.4 D38023 Mouse PIMT mRNA gene A N I 1.4 0.03 NC 0 0 D 1.6 0.1 U28807 “Mus musculus lymphoid-specific transcription factor NFA gene B N I * ˜1.3 0.03 NC * 0 0 NC 0 0 AA014656 “mg93g08.r1 Soares mouse embryo NbME13.5 14.5 Mus mu est B N I * 1.3 0.03 NC 0 0 NC 0 0 U04204 “Mus musculus BALB/c aldose reductase-related protein gene B N MI 1.3 0.03 NC 0 0 NC 0 0 AA068350 mm55c11.r1 Stratagene mouse embryoic carcinoma (#937 est B N I * 1.3 0.03 NC * 0 0 NC 0 0 AA068847 mm64a09.r1 Stratagene mouse embryonic carcinoma (#93 est C N MI * 1.4 0.03 NC * 0 0 NC 0 0 AA050733 mj16h08.r1 Soares mouse embryoNbME13.5 14.5 Mus mu est D N I * 1.3 0.03 NC * 0 0 NC 0 0 L33416 “Mouse (clone p85) secreted protein mRNA, complete cds” gene D N I 1.2 0.03 NC 0 0 NC 0 0 AA041826 mj07d08.r1 Soares mouse embryo NbME13.5 14.5 Mus mu est D N I * ˜1.2 0.02 I * ˜2.3 0.21 MI 1.9 0.2 W18778 mc05e01.r1 Soares mouse p3NMF19.5 Mus musculus cD est D N I * 1.2 0.02 I * 1.8 0.21 I 1.5 0.2 AA023591 mh80b01.r1 Soares mouse placenta 4NbMP13.5 14.5 Mu est D N I 1.2 0.02 I 1.6 0.17 I 1.4 0.1 L29479 “Mus musculus serine/threonine kinase (sak-a) mRNA, co gene C N I * ˜1.2 0.02 I * ˜1.8 0.12 NC 0 0 L07101 “Mus musculus HMG box protein mRNA, complete cds” gene D N I * ˜1.3 0.02 I * ˜1.9 0.12 I 1.5 0.1 AA125097 p77d04.r1 Soares 2NbMT Mus musculus cDNA clone 57 est A N I * ˜1.2 0.02 I * ˜1.7 0.11 NC 0 0 U50734 “Mus musculus maternal transcript Maid (Maid) mRNA, co gene B N I * ˜1.3 0.02 MI * ˜1.6 0.08 NC 0 0 L08266 “Mouse Facc mRNA, complete cds“ gene D N I * ˜1.2 0.02 MI * ˜1.6 0.07 NC 0 0 AA108891 m156c09.r1 Stratagene mouse testis (#937308) Mus muscu est C N I 1.3 0.02 I 1.5 0.06 NC 0 0 W55077 est A Y I * ˜1.2 0.02 MI * ˜1.3 0.03 NC * 0 0 AA117227 mo62h09.r1 Stratagene mouse Tcell 937311 Mus musculu est C N MI 1.2 0.02 I 1.3 0.03 NC * 0 0 AA118162 mn12f11.r1 Beddington mouse embryonic region Mus mus est D N I 1.1 0.02 I 1.2 0.03 NC 0 0 AA154734 mr32c06.r1 Soares mouse 3NbMS Mus musculus cDNA c est D N I * ˜1.2 0.02 MI * ˜1.2 0.02 NC * 0 0 U07950 “Mus musculus BALB/c GbP-dissociation inhibitor (GDI-1) gene C N I 1.2 0.02 I 1.2 0.02 NC 0 0 W49039 est A Y MD * ˜1.2 0.02 NC * 0 0 NC * 0 0 W82852 me93c07.r1 Soares mouse embryo NbME13.5 14.5 Mus m est A N I * ˜1.2 0.02 NC * 0 0 MC * ˜2.4 0.3 W78500 me78h04.r1 Soares mouse embryo NbME13.5 14.5 Mus m est A N D * ˜1.1 0.02 NC * 0 0 NC * 0 0 AA036546 mi50f02.r1 Soares mouse embryo NbME13.5 14.5 Mus m est B N I * ˜1.1 0.02 NC * 0 0 NC * 0 0 W81967 me93h03.r1 Soares mouse embryo NbME13.5 14.5. Mus m est B N I * ˜1.2 0.02 NC * 0 0 D * 2.1 0.2 AA064467 mi49c07.r1 Stratagene mouse testis (#937308) Mus muscul est C N I * ˜1.2 0.02 NC * 0 0 NC * 0 0 AA065689 mm43d07.r1 Stratagene mouse melanoma (#937312) Mus est C N MI * ˜1.2 0.02 NC * 0 0 NC * 0 0 M73061 “Mouse macrophage inflammatory protein-1-alpha gene, c gene D N D ˜1.2 0.02 NC 0 0 I * ˜1.8 0.1 L19311 “Mouse spermidine synthase mRNA, complete cds” gene A N MI 1.1 0.02 NC 0 0 NC 0 0 W61805 est A Y I * ˜1.2 0.02 NC * 0 0 NC 0 0 U51866 “Mus musculus casein kinase II alpha subunit mRNA, com gene A N I * ˜1.1 0.02 NC * 0 0 NC 0 0 W64759 “md89d07.r1 Soares mouse embryo NbME13.5 14.5 Mus m est A N I * ˜1.2. 0.02 NC * 0 0 NC 0 0 AA060187 m65d07.r1 Soares mouse 3NMF19.5 Mus musculus cDNA est B N I 1.2 0.02 NC 0 0 D 1.3 0.1 X65026 M. musculus mRNA for GTP-binding protein gene C N I 1.1 0.02 NC 0 0 NC 0 0 AA170104 ms49a04.r1 Life Tech mouse embryo 13 5dpc 1666014 est C N MI 1.2 0.02 I 1 0 NC 0 0 U68564 “Mus musculus NAD(H)-specific isocitrate dehydrogenease gene C N MI 1.1 0.02 NC 0 0 NC 0 0 AA034842 mi52f10.r1 Soares mouse embryo NbME13.5 14.5 Mus mu est D N I 1.2 0.02 NC 0 0 NC 0 0 AA061624 mj90h11.r1 Soares mouse p3NMF19.5 Mus musculus cDNA est D N I * ˜1.1 0.01 I * ˜2.8 0.49 I 2.5 0.5 M69293 “Mouse Id2 protein (Id-2) mRNA, 3′ end” gene A N I 1.2 0.01 I 2.5 0.43 NC 0 0 D00613 Mouse mRNA for matrix Gla protein (MGP) gene D N MI 1.1 0.01 I 1.3 0.15 I 1.3 0.2 W34891 md62g05.r1 Soares mouse embryo NbME13.5 14.5 Mus m est D N I * ˜1.1 0.01 I * ˜1.6 0.11 NC 0 0 M85078 “Mus musculus granulocyte-macrophage colony stimulatir gene D N I * ˜1.1 0.01 I * ˜1.5 0.06 NC * 0 0 X13664 Mouse mRNA for N-ras protein (exons 1-6 part) gene A N I * ˜1.2 0.01 I * ˜1.6 0.06 NC 0 0 AA142505 mq56h11.r1 Soares 2NbMT Mus musculus cDNA clone 58 est C N I * 1.2 0.01 MI 1.6 0.06 NC 0 0 AA161905 mn41f03.r1 Beddington mouse embryonic region Mus mus est B N I * ˜1.1 0.01 I ˜1.4 0.05 NC 0 0 M59821 “Mouse growth factor-inducible protein (pip92) mRNA, co gene A N I 1.2 0.01 I 1.3 0.04 NC 0 0 U44795 “Mus musculus coagulation factor VII (fVII) mRNA,compl gene B N MI * 1.2 0.01 MI * ˜1.4 0.03 NC * 0 0 W33538 “mc52e02.r1 Soares mouse embryo NbME13.5 14.5 Mus est D N D 8 ˜1.1 0.01 D * ˜1.1 0.01 NC * 0 0 M37335 “Mouse myelin proteolipid protein gene, exon 7, clones la gene A N D * ˜1.2 0.01 NC * 0 0 I * 2.7 0.4 M89798 “Mouse Wnt-5a mRNA, complete cds” gene A N I * ˜1.1 0.01 I * ˜1.0 0 NC * 0 0 W59472 md61c06.r1 Soares mouse embryo NbME13.5 14.5 Mus m est A N MD ˜1.3 0.01 NC 0 0 NC * 0 0 W98496 mg13e10.r1 Soares mouse embryo NbME13.5 14.5 Mus m est A N I * ˜1.1 0.01 I * ˜1.0 0 NC * 0 0 L37297 Mus musculus (clone B6) myeloid secondary granule prote gene B N I * ˜1.1 0.01 NC * 0 0 NC * 0 0 AA041873 mj05c12.r1 Soares mouse embryo NbME13.514.5 Mus mu est B N MI * ˜1.1 0.01 NC * 0 0 NC * 0 0 U49391 “Mos musculus nucleotide-gated olfactory channel gene C N D ˜1.1 0.01 NC 0 0 NC * 0 0 AA169961 ms48c08.r1 Life Tech mouse embryo 13 5dpc 10666014 M est D N D ˜1.1 0.01 NC 0 0 NC * 0 0 M96823 “Mouse nucleobindin mRNA, complete cds” gene A N I 1.1 0.01 NC 0 0 D 1.4 0.1 D31842 “Mouse mRNA for putative protein tyrosine phosphatase gene A N I * ˜1.1 0.01 NC * 0 0 NC 0 0 W85163 mf37c09.r1 Soares mouse embryo NbME13.5 14.5 Mus m est A N MI * ˜1.1 0.01 NC 0 0 NC 0 0 U53696 “Mus musculus class II cytokine receptor 4 (CRF2-4) mRN gene B N I 1.2 0.01 NC 0 0 NC 0 0 X06340 Mouse mRNA for P-cadherin gene B N MI * 1.2 0.01 NC * 0 0 NC 0 0 X63440 M. musculus mRNA for P19-protein tyrosine phosphatase gene B N I * ˜1.2 0.01 NC * 0 0 NC 0 0 L40632 “Mus musculus epithelial ankyrin 3 (7kb isoform) mRNA, c gene C N MI * ˜1.1 0.01 NC * 0 0 NC 0 0 U60593 “Mus musculus cytoplasmic protein Ndr1 (Ndr1) mRNA, c gene C N I * 1.1 0.01 NC 0 0 D 2.2 0.5 U29947 “Mus musculus alpha-D-mannosidase (Man2b1) mRNA, co gene C N I 1.1 0.01 NC 0 0 NC 0 0 U69176 “Mus musculus laminin alpha 4 chain mRNA, complete cds gene C N I * 1.1 0.01 NC * 0 0 NC 0 0 AA122619 mr133d03.r1 Beddington mouse embryonic region Mus mu est C N I * ˜1.0 0.01 I * ˜1.0 0 NC 0 0 AA168061 ms29c05.r1 Stratagene mouse skin (#937313) Mus musc est D N I 1.1 0.01 I 1 0 NC 0 0 AA170018 “ms58h12.r1 Life Tech mouse embryo 13 5dpc 10666014 est D N MI 1.1 0.01 NC 0 0 NC 0 0 AA108827 mp36b01.r1 Barstead MPLRB1 Mus musculus cDNA clone est D N I 1.1 0.01 NC 0 0 NC 0 0 AA050218 mj17909.r1 Soares mouse embryo NbME13.5 14.5 Mus m est D N MI 1.1 0.01 NC 0 0 NC 0 0 W50138 est A Y NC 0 0 MI 20 16.94 NC 0 0 M29015 “Mouse ribosomal protein L7 (rpL7) gene, complete cds” gene A N NC 0 0 I 4.2 2.57 I 2.1 0.9 W51486 est A Y NC * 0 0 MI * ˜6.5 2.46 NC * 0 0 X63099 M. musculus mRNA for connexin31 gene B N NC * 0 0 I * 6.2 2.23 I 1.9 0.3 M13522 Murine serum amyloid A-2 (SAA-2) gene gene A N NC * 0 0 D * ˜4.5 1.77 NC * 0 0 Z29532 M. musculus mRNA for follistatin gene B N NC * 0 0 I * 5.4 1.71 I 3 0.9 U02298 “Mus musculus NIH 3T3 chemokine rantes (Scya5) gene, gene B N NC * 0 0 I * 4.8 1.63 I 4.9 2.2 W41622 mc47a10.r1 Soares mouse p3NMF19.5 Mus musculus cDN est D N NC 0 0 I 3.2 1.3 I 2.7 1.5 V00835 Mouse gene for Metaliothionein-1 (three exons) gene D N NC 0 0 D 3.2 1.16 D 3.7 2.7 W12946 ma89h10.r1 Soares mouse p3NMF19.5 Mus musculus cDN est D N NC 0 0 MI 3.6 1.08 NC 0 0 D30782 “Mouse mRNA for epiregulin, complete cds” gene B N I * ˜1.0 0 I * ˜4.0 1.01 I * 5.4 1.7 M83219 “Mus musculus intracellular calcium-binding protein (MRP- gene C N NC 0 0 D 3.1 0.97 NC 0 0 D78135 “Mouse mRNA for glycine-rich RNA binding protein CIRP, c gene A N NC * 0 0 I * ˜4.1 0.95 NC 0 0 L28117 Mouse NF-kappa-B (p105) mRNA gene C N NC * 0 0 I * ˜4.2 0.94 I 1.5 0.1 AA119959 mp87b08.r1 Soares 2NbMT Mus musculus cDNA clone 57 est C N NC 0 0 MI 2.8 0.79 NC 0 0 M60523 “Mouse helix-loop-helix protein (Id related) mRNA, comple gene D N NC 0 0 I 2.1 0 77 I 2.6 2.2 D10727 “Mouse mRNA for NDPP-1 protein, complete cds” gene D N NC * 0 0 I * ˜3.4 0.67 NC 0 0 W75403 me52t11.r1 Soares mouse embryo N bME13.5 14.5 Mus m est A N NC 0 0 I 1.8 0.66 I 1.2 0.1 W41883 “mc64g08.r1 Soares mouse embryo NbME13.5 14.5 Mus est A N NC 0 0 I 1.6 0.65 I 1.5 0.6 U79523 “Mus musculus peptidylglycine alpha-amidating monooxyg gene C N NC * 0 0 I * 3 0.64 NC * 0 0 J03783 “Mouse interleukin 6 mRNA, complete cds” gene D N NC * 0 0 I * ˜3.2 0.62 I * 6.6 2.5 W82958 mf08d08.r1 Soares mouse p3NME19.5 Mus musculus cDN est A N NC * 0 0 I * 3.4 0.61 NC 0 0 AA424453 mp96a02.r1 Soares 2NbMT Mus musculus cDNA clone 577 est C N NC * 0 0 I * 3 0.58 MI * 1.3 0.1 AA144240 “mr78c07.r1 Stratagene mouse heart (#937316) Mus mu est D N NC * 0 0 I * 3.1 0.57 MI * 1.9 0.3 U34245 “Mus musculus fos-related antigen-1 (Fra-1) mRNA, comp gene C N NC * 0 0 I * 2.7 0.56 MI 1.3 0.1 AA060840 mj80d05.r1 Soares mouse p3NMF19.5 Mus musculus cDNA est B N NC * 0 0 D * 3.1 0.54 NC * 0 0 W13693 ma94g01.r1 Soares mouse p3NMF19.5 Mus musculus cDN est D N NC * 0 0 I * 3.3 0 54 I 2.2 0.4 U63386 “Mus musculus nuclear transcriptional repressor Mph1 mR gene C N NC * 0 0 I * 3.2 0.53 NC 0 0 X16995 Mouse N10 gene for a nuclear hormonal binding receptor gene A N NC * 0 0 I * 2.5 0.48 I 1.7 0.2 W83337 mf25h11.r1 Soares mouse embryo NbME13.5 14.5 Mus mus est C N NC 0 0 D 1.6 0.48 D 1.2 0.1 U39066 “Murine MAP kinase kinase 6c mRNA, complete cds” gene C N NC * 0 0 MI * 2.9 0.46 I 1.7 0.1 W89900 mf77h05.r1 Soares mouse embryo NbME13.5 14.5 Mus mus est A N NC 0 0 D 2 0.43 D 1.4 0.1 AA071689 est A T NC 0 0 D 2 0.41 NC 0 0 AA068364 mm53c08.r1 Stratagene mouse embryonic carcinoma (#937 est C N NC 0 0 D 2 0.41 NC 0 0 L43326 “Mus musculus kinectin (CG-1) mRNA, complete cds” gene C N NC * 0 0 I * ˜2.9 0.4 I * 2.1 0.2 AA071792 mm72a03.r1 Stratagene mouse macrophage (#937306) Mu est C N NC * 0 0 I * 2.8 0.4 NC 0 0 W98609 “mg14h05.r1 Soares mouse embryo NbME13.5 14.5 Mus est B N NC * 0 0 D * ˜2.6 0.39 D * 2.1 0.2 U50378 “Mus musculus DNA repair enzyme (Ku 70) gene, exon 1 gene D N NC * 0 0 I * ˜2.7 0.38 NC 0 0 AA028701 mi12g10.r1 Soares mouse p3NMF19.5 Mus musculus cDN est B N NC 0 0 MI 1.9 0.37 NC 0 0 U72881 “Mus musculus RGS-r protein mRNA, complete cds” gene C N NC * 0 0 I * ˜2.0 0.37 I * ˜3.7 1.5 W46019 mc77h09.r1 Soares mouse embryo NbME13.5 14.5 Mus m est C N NC 0 0 D 2.1 0.36 NC * 0 0 X73359 M. musculus mAES-1 mRNA gene A N NC 0 0 MD 1.7 0.36 D 1.4 0.2 J03023 “Murine macrophage gene, encoding bmk (B cell/myeloid gene D N NC * 0 0 I * ˜2.6 0.35 MI * 1.8 0.2 W14352 mb33h03.r1 Soares mouse p3NMF19.5 Mus musculus cD est D N NC * 0 0 MI * 2.7 0.35 NC * 0 0 AA016431 mh38h02.r1 Soares mouse placenta 4NbMP13.5 1.4.5 Mu est B N NC 0 0 D 1.7 0.34 D 1.4 0.1 L38971 “Mus musculus (E25) mRNA, complete cds” gene C N NC 0 0 D 1.9 0.34 D 1.7 0.3 U54803 “Mus musculus cysteine protease (Lice) gene, exons 3-7, gene C N NC 0 0 I 2.4 0.34 I 2.6 0.6 AA152695 “ms12a04.r1 Stratagene mouse skin (#937313) Mus muscu est D N NC * 0 0 MI * ˜2.4 0.32 MI * 3 0.6 W09323 ma06h08.r1 Soares mouse p3NMF19.5 Mus musculus cD est D N NC * 0 0 MD * ˜2.3 0.32 NC * 0 0 X64550 M. musculus mNRA RHAMM gene C N NC * 0 0 I * 2.5 0.31 MI 1.8 0.2 M31419 “Mouse 204 interferon-activatable protein mRNA, comple gene D N NC * 0 0 I * ˜2.5 0.31 NC 0 0 D50494 “Mouse mRNA for murine RCK, complete cds” gene C N NC 0 0 I 1.9 0.3 I 1.8 0.3 U33198 “Mus musculus intranuclear protein mRNA, complete cds” gene B N NC 0 0 I ˜2.6 0.29 NC * 0 0 AA034714 “m155h03.r1 Soares mouse embryo NbME13.5 14.5 Mus m est A N NC 0 0 D 1.3 0.28 D 1.3 0.3 U19118 “Mus musculus transcription factor LRG-21 mRNA, comple gene B N NC * 0 0 I * ˜2.4 0.28 I 1.8 0.2 AA060550 mj69d11.r1 Soares mouse p3NMF19.5 Mus musculus cDN est B N NC 0 0 D 1.8 0.28 D 1.5 0.2 AA144887 mr11d06.r1 Soares mouse 3NbMS Mus musculus cDNA clon est D N NC * 0 0 ˜2.5 0.28 NC 0 0 U17259 “Mus musculus p19 mRNA, complete cds” gene A N NC 0 0 D 2.4 0.27 NC 0 0 U05241 “Mus musculus c-Src kinase (Csk) mRNA, complete cds” gene B N NC 0 0 D 1.9 0.27 D 1.4 0.1 W50127 est A Y NC 0 0 C ˜1.6 0.26 D * ˜1.0 0 J03877 “Mouse gamma-renin mRNA; complete cds” gene C N NC * 0 0 MD * ˜2.3 0.26 NC 0 0 U02997 “Mus musculus 129 cryptdin-2 (Defcr2) gene, exon 2 and gene A N NC 0 0 I 1.7 0.26 I 1.6 0.3 U26176 “Mus musculus somatostatin receptor type 4 (SSTR4) gen gene A N NC 0 0 MI 2.2 0.26 NC 0 0 V00727 Mouse c-fos oncogene gene B N I * ˜1.0 0 I * ˜2.3 0.26 I 2.4 0.3 U12961 “Mus musculus NAD(P)H:menadione oxidoreductase (Nmo gene AN NC * 0 0 I * ˜2.3 0.25 NC 0 0 AA035993 m171c05.r1 Soares mouse embryo NbME13.5 14.5 Mus m est D N NC * 0 0 I * ˜2.2 0.25 I 3 0.6 U38940 “Mus musculus asparagine synthetase mRNA, complete cd gene B N NC 0 0 MD 1.5 0.24 NC 0 0 W58941 md53e02.r1 Soares mouse embryo NbME13.5 14.5 Mus m est A N NC 0 0 I 1.6 0.23 NC 0 0 U14135 “Mus musculus CD1 integrin alpha v subunit mRNA, comp gene B N NC * 0 0 I * ˜2.3 0.23 NC 0 0 AA030421 m128f03.r1 Soares mouse embryo NbME13.5 14.5 Mus mu est B N NC 0 0 I 2.1 0.23 I 1.6 0.1 D16464 Mouse helix-loop-helix factor HES-1 gene gene B N NC 0 0 I 1.7 0.23 MI 1.4 0.1 X72310 M. musculus mRNA for DRTF-polypeptide-1 (DP-1) gene B N NC 0 0 I 2 0.23 NC 0 0 AA061016 mj88f06.r1 Soares mouse p3NMF19.5 Mus musculus cDN est B N NC * 0 0 ˜2.3 0.23 D 3.5 0.7 U34277 “Mus musculus PAF acetythydrotase mRNA, complete cds” gene A N NC * 0 0 MI * ˜2.3 0.22 NC 0 0 X61940 Mouse mRNA for a growth factor-inducible immediate ear gene B N NC 0 0 MI 1.8 0.22 NC 0 0 AA169951 ms44ct04.r1 Life Tech mouse embryo 13 5dpc, 10666014 est C N NC 0 0 D 1.5 0.22 D 1.3 0.1 J03168 “Mouse interferon regulatory factor-2 mRNA, complete cd gene D N I * ˜1.0 0 I * ˜2.2 0.22 I 2.5 0.4 W47863 mc84h02.r1 Soares mouse embryo NbME13.5 14.5 Mus m est A N NC * 0 0 I * 1.6 0.21 NC * 0 0 AA120203 mn35d09.r1 Beddington muse embryonic region Mus mus est C N NC 0 0 D 2.3 0.21 NC * 0 0 AA138791 mr02c08.r1 Soares mouse 3NbMS Mus musculus cDNA cl est D N NC * 0 0 I * 2.1 0.2 I * 1.7 0.2 D32167 Mouse zic mRNA for Zic protein, complete cds” gene A N NC 0 0 I 2.2 0.21 NC 0 0 AA051341 mj40d10.r1 Soares mouse embryo NbME13.5 14.5 Mus m est B N NC * 0 0 I * ˜2.1 0.21 MI 2.1 0.2 U49351 “Mus musculus tysosomal alpha-glucosidase mRNA, compl gene C N NC 0 0 D 1.6 0.21 D 1.3 0.1 AA008463 “mg83c09.r1 Soares mouse embryo NbME13.5 14.5 Mus est B N NC 0 0 MD 2 0.2 NC 0 0 U25096 “Mus musculus Kruppel-like factor LKLF mRNA, complete gene B N NC * 0 0 MI * 1.9 0.2 NC * 0 0 AA061915 mj84a02.r1 Soares mouse p3NMF19.5 Mus musculus cDN est C N NC 0 0 MD 1.6 0.2 MD 1.5 0.2 AA064021 mj61f02.r1 Soares mouse embryo NbME13.5 14.5 Mus mu est C N NC 0 0 D 1.4 0.2 D 1.3 0.2 AA066424 mm30c05.r1 Stratagene mouse skin (#937313) Mus mus est C N I * ˜1.0 0 I * ˜1.9 0.19 MI * 2.5 0.3 AA111592 mo32h08.r1 Life Tech mouse embryo 13 5dpc 10666014 M est C N NC * 0 0 MD * 1.9 0.19 NC * 0 0 AA153484 “mr84h03.r1 Stratagene mouse heart (#937316) Mus muscl est D N I * ˜1.0 0 I * ˜1.8 0.19 NC 0 0 W41072 mc39b08.r1 Soares mouse p3NMF19.5 Mus musculus cDN est D N NC 0 0 I 1.8 0.19 NC 0 0 U36757 “Mus musculus thrombin receptor (Cf2r) gene, exon 2 an gene A N NC * 0 0 MI * 2 0.18 NC * 0 0 U21951 “Mus musculus apolipoprotein B mRNA-editing componen gene A N I * ˜1.0 0 I * ˜1.8 0.18 NC * 0 0 U59864 “Mus musculus TRAF-interacting protein t-TRAF mRNA, cc gene C N NC * 0 0 I * ˜2.1 0.18 MI * 2.6 0.4 W16201 mb63d06.r1 Soares mouse p3NMF19.5 Mus musculus cD est D N NC 0 0 I 2.1 0.18 MI 1.6 0.1 X52886 M. musculus mRNA for cathepsin D gene B N NC 0 0 D 1.5 0.17 D 1.6 0.3 W12204 ma65c11.r1 Soares mouse p3NMF19.5 Mus musculus cD est D N NC * 0 0 I * ˜2.0 0.17 I 2.1 0.3 D83206 “Mouse mRNA for P24 protein, complete cds” gene B N NC * 0 0 MI * 2.1 0.16 NC * 0 0 D76440 “Mouse gene necdin, complete cds and promoter sequ gene A N NC 0 0 D 1.5 0.16 D 1.3 0.1 L22472 “Mouse Bax alpha mRNA, complete cds” gene A N NC 0 0 D 1.4 0.16 D 1.7 0.6 X77731 M. musculus mRNA for Deoxycytidine kinase gene B N I * ˜1.0 0 I * ˜2.0 0.16 I 2.2 0.2 W89699 mt79b10.r1 Soares mouse embryo NbME13.5 14.5 Mus m est B N NC * 0 0 I * ˜2.0 0.16 NC 0 0 AA087334 “mn95W9.r1 Stratagene mouse lung 937302 Mus musculu est C N NC 0 0 I 1.9 0.16 NC 0 0 M62418 “Mouse clathrin-associated protein 19 (AP19) mRNA, com gene D N NC 0 0 I 1.5 0.16 NC 0 0 X15378 Mouse gene for the tight and heavy chains of myeloperoxi gene B N NC 0 0 D ˜1.9 0.15 MD * ˜2.2 0.2 AA064355 mt47a02.r1 Stratagene mouse testis (#937308) Mus musc est C N NC * 0 0 MI * ˜1.9 0.15 NC 0 0 W83519 “mf29f08.r1 Soares mouse embryo NbME13.5 14.5 Mus mu est A N NC 0 0 MD 1.2 0.14 NC 0 0 AA033333 “mi43e02.r1 Soares mouse embryo NbME13.5 14.5 Mus m est B N NC 0 0 I 1.6 0.14 NC 0 0 W41861 mc64a04.r1 Soares mouse embryo NbME13.5 14.5 Mus m est D N NC 0 0 I 1.4 0.14 NC 0 0 X67677 M. musculus c-yes mRNA gene B N NC 0 0 I ˜1.8 0.13 NC * 0 0 AA098525 “mk18a12.r1 Soares mouse p3NMF19.5 Mus musculus cD est C N NC * 0 0 I * ˜1.9 0.13 I * 1.9 0.2 U09928 “Mus musculus DBA/2J interferon-inducible RNA-dependen gene A N NC * 0 0 I * 1.6 0.13 NC 0 0 W65616 me12b10.r1 Soares mouse embryo NbME13.5 14.5 Mus mu est A N NC 0 0 I 1.8 0.13 NC 0 0 W34296 ma99e05.r1 Soares mouse p3NMF19.5 Mus musculus cD est B N NC 0 0 I 1.3 0.13 NC 0 0 AA024297 mh91a08.r1 Soares mouse placenta 4NbMP13.5 14.5 Mu est B N NC * 0 0 I * ˜1.9 0.13 NC 0 0 AA073986 mm95d03.r1 Stratagene mouse heart (#937316) Mus mus est C N NC 0 0 I 1.8 0.13 NC 0 0 M11686 “Mouse endo B cytokeratin mRNA, complete cds” gene D N NC * 0 0 I * ˜2.0 0.13 NC 0 0 M21050 “Mouse lysozyme M gene, exon 4” gene D N NC 0 0 I 1.6 0.13 I 1.6 0.2 M23504 “Mus musculus T cell secreted protein (P600) mRNA, con gene A N NC * 0 0 MD * ˜1.7 0.12 NC * 0 0 U37351 “Mus musculus Paneth celI enhanced expression PCEE mR gene B N NC 0 0 MI 1.6 0.12 I 1.1 0 AA087787 “mm86a12.r1 Stratagene mouse embryonic carcinoma RA est C N NC 0 0 I 1.2 0.12 NC 0 0 D00812 “Mouse mRNA for 30-KDa subunit of replication protein A gene D N NC 0 0 I 1.7 0.12 NC 0 0 L17076 Mus musculus (clones EcDNA1 and EcDNA4) RNA-binding gene D N NC 0 0 I 1.6 0.12 NC 0 0 W91095 mf84a04.r1 Soares mouse embryo NbME13.5 14.5 Mus m est A N NC 0 0 MD 1.8 0.11 NC * 0 0 AA097936 “mn82f02.r1 Stratagene mouse Tcell 937311 Mus muscul est C N NC * 0 0 MI * 1.7 0.11 NC * 0 0 W99019 mf92g05.r1 Soares mouse embryo NbME13.5 14.5 Mus mu est D N NC * 0 0 I * ˜1.8 0.11 NC * 0 0 W34743 mc62h02.r1 Soares mouse embryo NbME13.5 14.5 Mus m est D N NC * 0 0 MI * ˜1.7 0.11 NC * 0 0 W13196 mb33a06.r1 Soares mouse p3NMF19.5 Mus musculus cD est B N NC 0 0 I 1.7 0.11 NC 0 0 X73523 “M. musculus mRNA for Gal beta1, 3GalNAc alpha213-sialy gene B N NC * 0 0 I * 1.8 0.11 NC 0 0 X71327 M. musculus mRNA for MRE-binding transcription factor gene B N NC * 0 0 I * 1.8 0.11 NC 0 0 U05837 “Mus musculus mouse beta-N-acetylhexosaminidase alph gene B N NC 0 0 D 1.5 0.11 D 1.9 0.4 U28423 “Mus musculus protein kinase inhibitor p58 mRNA1, comple gene C N I * ˜1.0 0 I * ˜1.5 0.11 NC 0 0 X94444 M. musculus mRNA for preprocathepsin K gene C N NC 0 0 I 1.6 0.11 NC 0 0 W14370 mb36f09.r1 Soares mouse p3NMF19.5 Mus musculus cD est D N NC 0 0 I 1.4 0.11 I 1.5 0.3 W54637 est A Y NC 0 0 1.6 0.11 NC 0 0 X74145 M. musculus mRNA for protein kinase.crk4 gene A N NC 0 0 I 1.6 0.1 NC 0 0 X75888 M. musculus mRNA for cyclin E gene B N NC 0 0 I 1.5 0.1 NC 0 0 X80339 M. musculus Six1 mRNA gene C N NC 0 0 MI 1.7 0.1 NC 0 0 U60987 “Mus musculus FAD-linked glycerol-3-phosphate dehydro gene C N I * ˜1.0 0 I * ˜1.7 0.1 NC 0 0 AA144649 “mr70f07.r1 Sratagene mouse testis (#937308) Mus musc est C N NC 0 0 I 1.6 0.1 MI 1.5 0.1 AA14438 mr69f02.r1 Stratagene mouse testis (#937308) Mus musc est D N NC * 0 0 MI * ˜1.6 0.1 NC 0 0 W62420 md99g06.r1 Soares mouse embryo NbME13.5 14.5 Mus m est A N NC 0 0 MI 1.6 0.09 NC 0 0 W64413 “me03g03.r1 Soares mouse embryo NbME13.5 14.5 Mus m est A N NC 0 0 MI 1.6 0.09 NC 0 0 X78683 M. musculus mRNA for B-cell receptor associated protein ( gene B N NC 0 0 I 1.3 0.09 NC 0 0 AA034761 mi44d12.r1 Soares mouse embryo NbME13.5 14.5 Mus m est B N NC 0 0 I 1.5 0.09 I 1.5 0.1 AA098138 mn84c07.r1 Stratagene mouse Tcell 937311 Mus musculu est C N NC * 0 0 I * 1.6 0.09 NC 0 0 U27457 “Mus musculus origin recognition complex protein 2 homol gene C N NC * 0 0 I * ˜1.7 0.09 NC 0 0 AA163902 mr27a01.r1 Soares mouse 3NbMS Mus musculus cDNA cl est D N NC 0 0 I 1.6 0.09 I 1.5 0.1 M28312 “Mus musculus 3/10 metalloproteinase inhibitor gene, exc gene D N NC 0 0 I 1.2 0.09 I 1.3 0.2 U11075 “Mus musculus inwardly-rectifying K+ channel protein (mb gene A N NC * 0 0 MI * ˜1.7 0.08 NC * 0 0 AA020069 est B Y NC 0 0 MD ˜1.6 0.08 NC * 0 0 AA118151 mn11b10.r1 Beddington mouse embryonic region Mus muscl est C N I * ˜1.0 0 I * ˜1.5 0.08 I * 2.5 0.3 AA120674 mp75d12.r1 Soares 2NbMT Mus musculus cDNA clone 575 est D N I * ˜1.0 0 I * ˜1.5 0.08 MI * 1.8 0.2 W41627 “3mc47c09.r1 Soares mouse p3NMF19.5 Mus musculus cD est D N NC * 0 0 I * ˜1.5 0.08 NC * 0 0 X87671 “M. musculus mRNA for 3BP-1, an SH3 domain binding pro gene B N NC * 0 0 MI * ˜1.6 0.08 NC 0 0 U56909 “Mus musculus multiple testis transcript (mtt1) mRNA, cc gene C N NC * 0 0 I * ˜1.6 0.08 NC 0 0 AA124052 “mp98f06.r1 Soares 2NbMT Mus musculus cDNA clone 5 est C N NC 0 0 MI 1.7 0.08 NC 0 0 U35456 “Mus musculus glutathione synthetase type A1 mRNA, cc gene D N NC * 0 0 I * 1.6 0.08 MI 1.4 0.1 X72711 “M. musculus mRNA for replication factor C, large subunit” gene B N NC * 0 0 I * ˜1.5 0.07 I * ˜2.5 0.3 Z46966 M. musculus mRNA for imogene 44 gene B N NC * 0 0 I * ˜1.6 0.07 I * 1.8 0.1 D49473 “House mouse: Musculus domesticus adult tests mRNA f gene C N NC * 0 0 MI * ˜1.7 0.07 NC * 0 0 M28489 “Mus musculus (clone Mu6a) ribosomal protein S6 kinase gene A N NC 0 0 I 1.5 0.07 NC 0 0 U00689 “Mus musculus TIA mRNA, complete cds” gene A N NC * 0 0 I * ˜1.6 0.07 NC 0 0 U25051 “Mus musculus phosphatidylethanolamine-N-methyltransfe gene A N NC * 0 0 I * 1.6 0.07 NC 0 0 D00208 “Mouse pEL98 protein mRNA which is enhanced in establ gene C N NC 0 0 D 1.2 0.07 NC 0 0 AA137737 mq99a08.r1 Soares mouse 3NbMS Mus musculus cDNA clo est C N NC 0 0 MD 1.6 0.07 D 2.6 0.5 AA109109 “mo31a10.r1 Life Tech mouse embryo 13 5dpc 10666014 est D N NC 0 0 MI 1.4 0.07 NC 0 0 W09664 ma03d05.r1 Soares mouse p3NMF19.5 Mus musculus cDNA est D N NC 0 0 I 1.6 0.07 NC 0 0 W53731 md15g07.r1 Soares mouse embryo NbME13.5 14.5 Mus mu est D N I * ˜1.0 0 I * ˜1.6 0.07 NC 0 0 AA021788 mh86h07.r1 Soares mouse placenta 4NbMP13.514.5 Mu est D N NC * 0 0 I * ˜1.6 0.07 NC 0 0 W64800 md88f02.r1 Soares mouse embryo NbME13.5 14.5 Mus m est A N NC * 0 0 MI * 1.5 0.06 NC * 0 0 AA138324 mq96d09.r1 Stratagene mouse heart (#937316) Mus musc est B N NC * 0 0 I * ˜1.5 0.06 NC * 0 0 AA050934 mg72g12.r1 Soares mouse embryo NbME 13.5 1.45 Mus m est B N NC * 0 0 MI * 1.5 0.06 NC * 0 0 AA089111 “ml57d05.r1 Stratagene mouse testis (#937308) Mus musc est C N NC * 0 0 I * ˜1.5 0.06 NC * 0 0 W55814 est A Y NC * 0 0 I * ˜1.5 0.06 NC 0 0 W14755 “mb23g09.r1 Soares mouse p3NMF19.5 Mus musculus c est B N NC 0 0 I 1.2 0.06 NC 0 0 X75285 M. musculus mRNA for fibulin-2 gene C N NC 0 0 MD 1.1 0.06 NC 0 0 D29639 “Mouse embryonal carcinoma cell mRNA for 3-hydroxyacy gene C N NC 0 0 MI 1.3 0.06 NC 0 0 AA105621 “mm68b06.r1 Stratagene mouse macrophage (#937306) M est C N NC 0 0 MI 1.2 0.06 NC 0 0 L26320 “Mouse flap endonuclease-1 (FEN-1) mRNA, complete cds gene C N NC 0 0 I 1.4 0.06 NC 0 0 W13263 mb31d10.r1 Soares mouse p3NMF19.5 Mus musculus cDN est D N NC 0 0 I 1.4 0.06 NC 0 0 W0059 “mc26b04.r1 Soares mouse p3NMF19.5 Mus musculus cD est D N NC * 0 0 I * 1.5 0.06 I 1.8 0.2 U55057 “Mus musculus receptor protein tyrosine phosphatase-lam gene C N NC * 0 0 MI * ˜1.4 0.05 NC * 0 0 AA109999 “ml60a02.r1 Stratagene mouse testis (#937308) Mus mus est C N NC * 0 0 D * 1.5 0.05 NC * 0 0 AA068735 mm59d02.r1 Stratagene mouse embryonic carcinoma (#9 est D N NC * 0 0 I * ˜1.4 0.05 MI * 1.5 0.1 AA034714 “m155h03.r1 Soares mouse embryo NbME13.5 14.5 Mus m est A N NC 0 0 MD 1.2 0.05 D 1.3 0.2 AA119194 mp63a03.r1 Soares 2NbMT Mus musculus cDNA clone 57 est B N NC 0 0 I 1.5 0.05 I 1.3 0 W42234 mc37a06.r1 Soares mouse p3NMF19.5 Mus musculus cD est B N NC 0 0 D 1.3 0.05 D 1.4 0.1 X74351 M. musculus mRNA for XPAC Xeroderma Pigmentosum gro gene B N I * ˜1.0 0 MI * ˜1.4 0.05 NC 0 0 AA107514 mp05g07.r1 Life Tech mouse embryo 8 5dpc 10664019 est C N NC 0 0 D 1.2 0.05 D 1.3 0.1 AA086698 mn93b06.r1 Stratagene mouse Tcell 937311 Mus musculu est C N NC * 0 0 MI * 1.5 0.05 NC 0 0 X92411 M. musculus mRNA for MHR23B gene C N NC * 0 0 I * 1.5 0.05 NC 0 0 AA104940 mm67e02.r1 Stratagene mouse macrophage (#937306) Mu est C N NC * 0 0 I * 1.5 0.05 I 1.4 0.1 X96859 M. musculus mRNA for ubiquitin-conjugating enzyme gene C N NC 0 0 I 1.3. 0.05 NC 0 0 U60330 “Mus musculus Ki antigene mRNA, complete cds” gene C N NC 0 0 I 1.3 0.05 NC 0 0 AA146282 “mr06e08.r1 Soares mouse 3NbMS Mus musculus cDNA est D N I * ˜1.0 0 I * ˜1.4 0.05 NC 0 0 AA168283 “ms22d05.r1 Stratagene mouse skin (#937313) Mus musc est D N I * ˜1.0 0 I * ˜1.4 0.05 NC 0 0 M73741 “Mouse alpha-B2-crystallin gene, complete cds” gene D N NC 0 0 I 1.3 0.05 NC 0 0 W36586 mb86c07.r1 Soares mouse p3NMF19.5 Mus musculus cDN est D N NC 0 0 I 1.3 0.05 NC 0 0 U14332 “Mus musculus interleukin 15 (IL15) mRNA, complete cds gene A N NC * 0 0 I * ˜1.3 0.04 I * 1.8 0.1 AA027669 “1m109g01.r1 Soares mouse p3NMF19.5 Mus musculus cds est B N MI * ˜1.0 0 I * ˜1.3 0.04 NC * 0 0 L49502 “Mus musculus phosphoprotein (p150TSP) mRNA, comple gene B N NC * 0 0 I * 1.4 0.04 NC * 0 0 W46752 est B Y NC * 0 0 I * ˜1.3 0.04 NC * 0 0 D86948 “Mouse mRNA for plexin 1, complete cds” gene C N NC * 0 0 MI * ˜1.3 0.04 NC * 0 0 AA168694 ms35a08.r1 Stratagene mouse heart (#937316) Mus musc est D N NC * 0 0 I * ˜1.4 0.04 NC * 0 0 AA037945 m177e10.r1 Soares mouse p3NMF19.5 Mus musculus cD est D N NC * 0 0 I * ˜1.3 0.04 NC * 0 0 AA104477 mm66c11.r1 Stratagene mouse macrophage (#937306) M est D N I * ˜1.0 0 I * ˜1.2 0.04 NC * 0 0 M23503 “Mus musculus secreted T cell protein (H400, SIS-gamma gene D N NC * 0 0 MI * ˜1.4 0.04 NC * 0 0 L13103 “Mus musculus MEK kinase mRNA, complete cds” gene B N NC * 0 0 I * ˜1.4 0.04 NC * 0 0 U22516 “Mus musculus angiogenein precursor (Ang) gene, complet gene B N NC * 0 0 I * ˜1.4 0.04 NC 0 0 AA015354 mh13h07.r1 Soares mouse placenta 4NbMP13.5 14.5 Mus est C N MI * ˜1.0 0 MI * ˜1.3 0.04 NC 0 0 U48737 “Mus musculus serine/threonine-protein kinase PRP4m (Pf gene C N NC * 0 0 MI * ˜1.4 0.04 NC 0 0 D87899 “House mouse; Musculus domesticus male brain mRNA for gene C N NC * 0 0 I * 1.4 0.04 NC 0 0 AA103078 “mo20g01.r1 Life Tech mouse embryo 13 5dpc 10666014 est C N NC 0 0 I 1.4 0.04 I 2.2 0.3 AA117313 mn19c12.r1 Beddington mouse embryonic region Mus musc est C N NC * 0 0 I * ˜1.4 0.04 NC 0 0 AA140026 mq39h04.r1 Barstead MPLRB1 Mus musculus cDNA clone est D N NC 0 0 I 1.3 0.04 NC 0 0 AA059763 “mj77e11.r1 Soares mouse p3NMF19.5 Mus musculus cD est D N NC 0 0 I 1.2 0.04 I 1.4 0.2 L11316 “Mouse oncogene (ect2) mRNA, complete cds” gene D N I * ˜1.0 0 I * ˜1.3 0.04 NC 0 0 D26090 “Mouse mRNA for mCDC46 protein, complete cds” gene D N NC 0 0 I 1.2 0.04 NC 0 0 AA003162 mg51a09.r1 Soares mouse embryo NbME13.5 14.5 Mus m est D N I 1 0 I 1.3 0.04 NC 0 0 L38677 “Mus musculus alpha 2,8-sialyltransferase (GD3 synthase) gene B N I * ˜1.0 0 I * ˜1.2 0.03 NC * 0 0 X96793 M. musculus mRNA for placenta growth factor gene B N NC * 0 0 I * ˜1.2 0.03 NC * 0 0 X63162 M. musculus mRNA for transin-1 gene B N I * ˜1.0 0 I * ˜1.2 0.03 NC * 0 0 U61363 “Mus musculus groucho-related gene 4 protein (Grg4) mR gene C N NC * 0 0 I * 1.4 0.03 NC * 0 0 U64199 “Mus musculus II-12 receptor beta2 mRNA, complete cds” gene C N NC * 0 0 MD * ˜1.3 0.03 NC * 0 0 X14029 Mouse MulFN-beta gene for beta-interferon gene D N NC * 0 0 I * ˜1.2 0.03 I * ˜3.3 0.8 X53953 M. musculus ets-1 mRNA gene A N NC * 0 9 I * ˜1.3 0.03 NC 0 0 U12922 “Mus musculus CD1 geranylgeranyl transferase beta subu gene C N NC 0 0 I 1.2 0.03 NC 0 0 U58888 “Mus musculus SH3-containing protein SH3P2 mRNA, par gene C N NC 0 0 Ml 1.1 0.03 NC 0 0 W41974 mc68h11.r1 Soares mouse embryo NbMEt3.5 14.5 Mus est D N NC 0 0 I 1.3 0.03 MI 1.2 0 X56461 Murine Hox2.2 mRNA for a homeobox protein gene D N NC * 0 0 I * ˜1.3 0.03 NC 0 0 W20901 mb95a12.r1 Soares mouse p3NMF19.5 Mus musculus cD est D N NC * 0 0 I * ˜1.4 0.03 NC 0 0 M33467 Mouse dilute lethal-20J (d-120J) deletion breakpoint fusio est A N I * ˜1.0 0 I * ˜1.3 0.02 NC * 0 0 D28941 “Mouse mRNA for alpha-2,3-sialyltransferase, complete cc gene A N NC * 0 0 I * ˜1.1 0.02 NC * 0 0 W89740 mf77a09.r1 Soares mouse embryo NbME13.5 14.5 Mus m est A N NC * 0 0 MI * ˜1.3 0.02 NC * 0 0 D00622 Mouse mRNA for heparin binding protein 44 gene B N NC * 0 0 Ml * 1.2 0.02 NC * 0 0 L49433 “Mus musculus TNFR2-TRAF signalling complex protein m gene B N I * ˜1.0 0 I * ˜1.1 0.02 NC * 0 0 U43321 “Mus musculus putative transmembrane receptor (frizzled gene B N NC * 0 0 I * ˜1.2 0.02 NC * 0 0 AA023087 mh67a10.r1 Soares mouse placenta ANbMp13.5 14.5 Mus m est B N NC * 0 0 I * 1.3 0.02 I * 1.4 0 X84797 M. musculus mRNA similar to human hematopoeitic specifi gene/ B N NC * 0 0 I * ˜1.2 0.02 NC * 0 0 X75018 M. musculus mRNA for Id4 helix-loop-helix protein gene C N I * ˜1.0 0 I * ˜1.1 0.02 I * ˜2.0 0.1 U42385 “Mus musculus fibroblast growth fadtor inducible gene 16 gene C N I * ˜1.0 0 I * ˜1.1 0.02 MI * ˜2.1 0.2 AA103507 mo25e04.r1 Life Tech mouse embryo 13 5dpc 10666014 M est C N NC * 0 0 MI * 1.1 0.02 NC 0 0 J03535 “Mouse Ig-related glycoprotein-70 mRNA, complete cds” gene D N NC * 0 0 I * ˜1.2 0.02 I * 1.7 0.1 J03733 “Mouse ornithing decarboxylase gene, complete cds” gene A N NC * 0 0 I * 1.1 0.02 NC 0 0 AA021664 est B Y NC * 0 0 I * ˜1.2 0.02 NC 0 0 AA027404 mi03d01.r1 Soares mouse placenta 4NbMP13.5 14.5 Mus m est B N NC 0 0 MI 1.2 0.02 NC 0 0 AA068062 ml77b11.r1 Stratagene mouse kidney (#937315) Mus muc est C N NC * 0 0 I * 1.2 0.02 NC 0 0 AA015331 mi61g04.r1 Soares mouse embryo NbMF13.5 1A.5 Mus m est C N NC 0 0 MI 1.1 0.02 NC 0 0 AA154013 “ms11t03s1 Stratagene mouse skin (#937313) Mus muscul est D N I * ˜1.0 0 I * ˜1.2 0.02 NC 0 0 AA170375 ms60c07.r1 Stratagene mouse embryonic carcinoma (#93 est D N NC 0 0 MI 1.1 0.02 I 1.5 0.4 AA028728 ms16d09.r1 Soares mouse p3NMF19.5 Mus musculus cDN est D N NC 0 0 I 1.2 0.02 MI 1.3 0.1 M17790 “Mouse SAA4 gene encoding serum amyloid A, exons 3 a gene A N NC * 0 0 I * ˜1.1 0.01 NC * 0 0 AA007899 “mg65e12.r1 Soares mouse embryo NbME13.5 14.5 Mus mu est B N NC * 0 0 MI * 1.2 0.01 NC * 0 0 X55573 M. musculus brain-derived neurotrophic factor mRNA gene B N NC * 0 0 I * ˜1.1 0.01 NC * 0 0 Z22649 M. musculus c-mpl mRNA gene B N NC * 0 0 I * ˜1.1 0.01 NC * 0 0 AA073278 mm82g03.r1 Stratagene mouse embryonic carcinoma RA est C N I * ˜1.0 0 I * ˜1.1 0.01 NC * 0 0 AA107515 mp05g08.r1 Life Tech mouse embryo 8 5dpc 10664019 Mu est C N NC * 0 0 I * ˜1.1 0.01 NC * 0 0 AA120368 mn17d01.r1 Beddington mouse embrybnic region Mus mu est C N NC * 0 0 I * ˜1.1 0.01 NC * 0 0 X82457 M. musculus es64 mRNA gene B N NC 0 0 I 1.1 0.01 MI 1.3 0.1 X57277 M. musculus rac1 gene gene C N NC 0 0 MI 1.1 0.01 NC 0 0 U56773 “Mus musculus pelle-like protein kinase mRNA, complete c gene C N NC 0 0 MI 1.1 0.01 NC 0 0 U66849 “Mus musculus hereditary haemochromatosis homolog mP gene C N I * ˜1.0 0 I * ˜1.1 0.01 NC 0 0 U30838 Mus musculus voltage dependent anion channel 2 mRNA gene C N MI 1 0 I 1.1 0.01 NC 0 0 AA162290 ms27c12.r1 Stratagene mouse skin (#937313) Mus muscl est D N NC 0 0 MI ˜1.2 0.01 NC 0 0 W90837 mf78g07.r1 Soares mouse embryo NbME13.5 14.5 Mus m est D N NC 0 0 MI 1.1 0.01 I 1.3 0.1 M13963 “Mouse inhibitory G protein of adenylate cyclase, alpha ch gene D N NC 0 0 I 1.1 0.01 NC 0 0 M57696 “Mouse lyn A protein tyrosine kinase (lynA) mRNA, compl gene D N NC * 0 0 I * 1.2 0.01 NC 0 0 D38417 “Mouse mRNA for arylhydrocarbon receptor, complete cd gene D N NC * 0 0 I * ˜1.1 0.01 I 1.7 0.1 L21768 “Mus musculus eps15 mRNA, complete cds” gene D N I * ˜1.0 0 I * ˜1.1 0.01 NC 0 0 1 - untreated RNL +/30 2 - IFNA - 18 h 3 - IFNA - 18 h + EMCV 6 h

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TABLE 7 MURINE GENES INDUCED BY IFN-α Apoptosis Immune Growth Regulation ICH-3 (Caspase-11) Modulation P204 PML ISG-15 PML MyD88 MIG GTP binding Proteins Signaling CyCAP LRG-47 IRF-1 & 7 RANTES GTP2 STAT 1 MCP-5 Miscellaneous PML IAP Thymidylate kinase hom. G3BP Antigen Processing Apolipoprotein D MyD88 LMP 2 & 7 GARGs ISGF3-γ PA 28 α and β Endoglin HAM 1 IKB-α TAP 2 Rpt-1 r

TABLE 8 EMCV-enhancement of gene expression in interferon-treated cells TK Homologue Growth Factor Inducible Prot. GARGs Inhibin β A subunit G/H synthase Inhibin β B subunit Squalene epoxidase IKB-α Cell. Retinoic acid BP EGF-like growth factor Hyaluronan Synth. Hom. RANTES PG2 (decorin) Epiregulin IL-11 IL-6 Pulmonary Surfactant Prot. IFN-β 

What is claimed is:
 1. An array for identifying agents which mimic or inhibit the activity of interferons comprising: a) gene probes that hybridize with from about 50 to about 10,000 interferon-stimulated and interferon-repressed gene transcripts, and b) a substrate to which said gene probes are attached; wherein the array comprises gene probes that hybridize to transcripts of no more than 99 genes whose expression is known not to be stimulated or repressed by interferon treatment, and wherein the array comprises a probe that hybridizes with the transcript of human phospholipid scramblase.
 2. The array of claim 1 wherein the gene probes are selected from the group consisting of oligonucleotides, cDNA molecules, and synthetic gene probes comprising nucleobases.
 3. The array of claim 1 wherein the array comprises a plurality of the genes listed in Table
 2. 4. The array of claim 1 wherein the array comprises a plurality of the genes listed in Table
 3. 5. An array for identifying agents which mimic or inhibit the activity of interferons comprising: a) gene probes that hybridize with from about 50 to about 10,000 interferon-stimulated and interferon-repressed gene transcripts, and b) a substrate to which said gene probes are attached; wherein the array comprises gene probes that hybridize to transcripts of no more than 99 genes whose expression is known not to be stimulated or repressed by interferon treatment, and wherein the array comprises a probe that hybridizes with the transcript of human 52 kD SS A-Ro autoantigen.
 6. The array of claim 5 wherein the gene probes are selected from the group consisting of oligonucleotides, cDNA molecules, and synthetic gene probes comprising nucleobases.
 7. The array of claim 5 wherein the array comprises a plurality of the genes listed in Table
 2. 8. The array of claim 5 wherein the array comprises a plurality of the genes listed in Table
 3. 